View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1946_low_16 (Length: 530)
Name: NF1946_low_16
Description: NF1946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1946_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 348; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 5 - 495
Target Start/End: Complemental strand, 42199379 - 42198885
Alignment:
| Q |
5 |
accaaaaccatattttagcctcaatttaataacaaaataattgagt---atgtctagttaaaaattggagaggatgtttgtgttgtttaagaaaacctta |
101 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42199379 |
accaaaaccatattttagcctcaatttaataacaaaataattgagtttaatgtctagttaaaaattggagaggatgtttgtgttgtttaagaaaacctta |
42199280 |
T |
|
| Q |
102 |
tcagaggttagtgtaatttacctttataaaactaatcctactggactattatggagttatttggataagnnnnnnn-gaagaaaaacaaacagtttttcg |
200 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
42199279 |
tcagaggttagtgtaatttacctttataaaactaatcctactggactattatggagttatttggataagaaaaaagagaagaaaaacaaacagtttttcg |
42199180 |
T |
|
| Q |
201 |
attcactatggttataatgatataaaaaggttacaacaacttgaaaaacctcactcatttgactcttggtaaaaactatctcacttccaacacatcattg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| |||||||||| |
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| T |
42199179 |
attcactatggttataatgatataaaaaggttacaacaacttgaaaaacctcactcatttgactcttggttataactatctcacttccaccacatcattg |
42199080 |
T |
|
| Q |
301 |
aattttcagttctttgaatcccttcgaaactcaactcagttgcagattcttatgatcaatgataacaacttgaccggggaacttccaagttcggttgatt |
400 |
Q |
| |
|
||||||||||||||||| |||||| |||||||||||||||||| |||||||| ||||| ||||||||||||| ||||||||||||| ||| ||||| | |
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| T |
42199079 |
aattttcagttctttgattcccttaaaaactcaactcagttgcaagttcttatggtcaattataacaacttgactggggaacttccaaattctgttgaat |
42198980 |
T |
|
| Q |
401 |
atctttcaagcaatctacaacagttttgtgttgctaataatcagctaaatggaagcattcctcatggaatgaataagtttcaaaatctcatatcc |
495 |
Q |
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|||| | | |||||||||||||||| ||||||||| |||||||||| | ||||||||||||||| |||||| | || ||||||||||||| |||| |
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| T |
42198979 |
atctgtgaggcaatctacaacagttctgtgttgctcataatcagctgagtggaagcattcctcagggaatgcagaaatttcaaaatctcacatcc |
42198885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 234 - 516
Target Start/End: Complemental strand, 42211717 - 42211435
Alignment:
| Q |
234 |
caacaacttgaaaaacctcactcatttgactcttggtaaaaactatctcacttccaacacatcattgaattttcagttctttgaatcccttcgaaactca |
333 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42211717 |
caacaacttgaaaaacctcactcatttgactcttggtaaaaactatctcacttccaacacatcattgaattttcagttctttgaatcccttcgaaactca |
42211618 |
T |
|
| Q |
334 |
actcagttgcagattcttatgatcaatgataacaacttgaccggggaacttccaagttcggttgattatctttcaagcaatctacaacagttttgtgttg |
433 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42211617 |
actcagttgcagattcttatgatcaatgataacaacttgaccggggaacttccaagttcggttgattatctttcaagcaatctacaacagttttgtgttg |
42211518 |
T |
|
| Q |
434 |
ctaataatcagctaaatggaagcattcctcatggaatgaataagtttcaaaatctcatatccttctcttttgaacagaattat |
516 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
42211517 |
ctaataatcagctaaatggaagcattcctcatggaatgaagaagtttcaaaatctcatatccttctcttttgaacagaattat |
42211435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 234 - 516
Target Start/End: Complemental strand, 42223933 - 42223651
Alignment:
| Q |
234 |
caacaacttgaaaaacctcactcatttgactcttggtaaaaactatctcacttccaacacatcattgaattttcagttctttgaatcccttcgaaactca |
333 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| |||| || |||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |
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| T |
42223933 |
caacaacttgaaaaacctcactcatttgtatctcagtaagaataatctcacttccactacatcattgaattttcagttctttgattcccttcgaaactca |
42223834 |
T |
|
| Q |
334 |
actcagttgcagattcttatgatcaatgataacaacttgaccggggaacttccaagttcggttgattatctttcaagcaatctacaacagttttgtgttg |
433 |
Q |
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|||||||| || ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42223833 |
actcagttacaaattcttatggtcaatgataacaacttgaccggggaacttccaagttcggttgattatctttcaagcaatctacaacagttttgtgttg |
42223734 |
T |
|
| Q |
434 |
ctaataatcagctaaatggaagcattcctcatggaatgaataagtttcaaaatctcatatccttctcttttgaacagaattat |
516 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
42223733 |
ctaataatcagctaaatggaagcattcctcatggaatgaagaagtttcaaaatctcatatccttctcttttgaacagaattat |
42223651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 25 - 123
Target Start/End: Original strand, 37767485 - 37767586
Alignment:
| Q |
25 |
tcaatttaataacaaaataattgag---tatgtctagttaaaaattggagaggatgtttgtgttgtttaagaaaaccttatcagaggttagtgtaattta |
121 |
Q |
| |
|
|||||||||||||||||||| ||| ||||| |||||||||| | ||| ||||||||||||| ||||| || |||| | ||||||||||||||||| |
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|
| T |
37767485 |
tcaatttaataacaaaataagggaggtttatgtttagttaaaaactagaggggatgtttgtgttatttaacaatacctcaggggaggttagtgtaattta |
37767584 |
T |
|
| Q |
122 |
cc |
123 |
Q |
| |
|
|| |
|
|
| T |
37767585 |
cc |
37767586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 58 - 120
Target Start/End: Complemental strand, 11669677 - 11669615
Alignment:
| Q |
58 |
gttaaaaattggagaggatgtttgtgttgtttaagaaaaccttatcagaggttagtgtaattt |
120 |
Q |
| |
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|||||||| | ||| ||||||||||||| |||||||| ||||||| |||||||||||||||| |
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|
| T |
11669677 |
gttaaaaaatagagtggatgtttgtgttatttaagaagaccttatgggaggttagtgtaattt |
11669615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 76 - 120
Target Start/End: Original strand, 27433007 - 27433051
Alignment:
| Q |
76 |
tgtttgtgttgtttaagaaaaccttatcagaggttagtgtaattt |
120 |
Q |
| |
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|||||||||| ||||||||||||||| |||||||||||||||| |
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|
| T |
27433007 |
tgtttgtgttatttaagaaaaccttacgggaggttagtgtaattt |
27433051 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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