View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1946_low_161 (Length: 212)

Name: NF1946_low_161
Description: NF1946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1946_low_161
NF1946_low_161
[»] chr8 (2 HSPs)
chr8 (11-194)||(44688805-44688983)
chr8 (158-194)||(13170800-13170836)
[»] chr3 (11 HSPs)
chr3 (22-135)||(41985600-41985713)
chr3 (23-135)||(9425545-9425657)
chr3 (22-127)||(41980834-41980939)
chr3 (25-129)||(9407344-9407448)
chr3 (26-107)||(9343845-9343926)
chr3 (22-107)||(9448314-9448399)
chr3 (40-135)||(9494857-9494952)
chr3 (57-134)||(9329809-9329886)
chr3 (22-135)||(9617494-9617607)
chr3 (23-129)||(9397763-9397869)
chr3 (57-134)||(9336513-9336590)
[»] chr2 (1 HSPs)
chr2 (57-135)||(20694367-20694445)
[»] chr1 (3 HSPs)
chr1 (44-129)||(18991182-18991267)
chr1 (57-135)||(4439832-4439910)
chr1 (23-135)||(4428603-4428715)
[»] chr7 (1 HSPs)
chr7 (40-135)||(3695662-3695757)
[»] chr6 (1 HSPs)
chr6 (26-129)||(7046817-7046920)


Alignment Details
Target: chr8 (Bit Score: 160; Significance: 2e-85; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 11 - 194
Target Start/End: Original strand, 44688805 - 44688983
Alignment:
Q  11 gagaagcataggaaatgggtaaagttaacgagtttagggaatagaattttgttcttggggaatgaatattcattttctactactgcttcggatttgtcta 110  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44688805 gagaagcataagaaatgggtaaagttaacgagtttagggaatagaattttgttcttggggaatgaatattcattttctactactgcttcggatttgtcta 44688904  T
Q  111 ttgccaaagggaattgtgtaatcttcacttgtgaatcaaatccttcaactattttgacgatatgctttgtgggatgtgtgtttt 194  Q
    |||||||||||||||||||||||||||||||||     ||||||||||||||||||||||||||||||||||||||||||||||    
T  44688905 ttgccaaagggaattgtgtaatcttcacttgtg-----aatccttcaactattttgacgatatgctttgtgggatgtgtgtttt 44688983  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 194
Target Start/End: Original strand, 13170800 - 13170836
Alignment:
Q  158 actattttgacgatatgctttgtgggatgtgtgtttt 194  Q
    ||||| ||||||| |||||||||||||||||||||||    
T  13170800 actatgttgacgagatgctttgtgggatgtgtgtttt 13170836  T

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Target: chr3 (Bit Score: 58; Significance: 1e-24; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 22 - 135
Target Start/End: Complemental strand, 41985713 - 41985600
Alignment:
Q  22 gaaatgggtaaagttaacgagtttagggaatagaattttgttcttggggaatgaatattcattttctactactgcttcggatttgtctattgccaaaggg 121  Q
    ||||||||| |||||  ||||||||||| ||||| |||||||||||||||||| || ||| |||||| || ||||||||||||||||| ||| ||||||     
T  41985713 gaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgcttcggatttgtctgttgtcaaagga 41985614  T
Q  122 aattgtgtaatctt 135  Q
    |||||||| |||||    
T  41985613 aattgtgtcatctt 41985600  T

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Target: chr3; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 23 - 135
Target Start/End: Complemental strand, 9425657 - 9425545
Alignment:
Q  23 aaatgggtaaagttaacgagtttagggaatagaattttgttcttggggaatgaatattcattttctactactgcttcggatttgtctattgccaaaggga 122  Q
    |||||||| ||||| | ||||||| |||||||  |||||||||| | ||||| || |||||||||| || | ||||||||||||| | ||||||||||||    
T  9425657 aaatgggtgaagttgatgagtttaaggaatagggttttgttctttgtgaatggatgttcattttctgcttcagcttcggatttgtgtgttgccaaaggga 9425558  T
Q  123 attgtgtaatctt 135  Q
    ||||||| |||||    
T  9425557 attgtgtcatctt 9425545  T

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Target: chr3; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 22 - 127
Target Start/End: Complemental strand, 41980939 - 41980834
Alignment:
Q  22 gaaatgggtaaagttaacgagtttagggaatagaattttgttcttggggaatgaatattcattttctactactgcttcggatttgtctattgccaaaggg 121  Q
    ||||||||| ||||| |||||||||||| ||||| |||||||||||||||||| || ||| |||| | || |||||||  |||||||| ||| ||||||     
T  41980939 gaaatgggtcaagttgacgagtttaggggatagagttttgttcttggggaatggatgttcgttttttgcttctgcttcaaatttgtctgttgtcaaagga 41980840  T
Q  122 aattgt 127  Q
    ||||||    
T  41980839 aattgt 41980834  T

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Target: chr3; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 25 - 129
Target Start/End: Complemental strand, 9407448 - 9407344
Alignment:
Q  25 atgggtaaagttaacgagtttagggaatagaattttgttcttggggaatgaatattcattttctactactgcttcggatttgtctattgccaaagggaat 124  Q
    |||||| ||||| | |||||||||| ||||  |||||||||| | ||||| || |||||||||| || | ||||||||||||| | ||||||||||||||    
T  9407448 atgggtgaagttgatgagtttaggggatagggttttgttctttgtgaatggatgttcattttctgcttcagcttcggatttgtgtgttgccaaagggaat 9407349  T
Q  125 tgtgt 129  Q
    |||||    
T  9407348 tgtgt 9407344  T

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Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 26 - 107
Target Start/End: Complemental strand, 9343926 - 9343845
Alignment:
Q  26 tgggtaaagttaacgagtttagggaatagaattttgttcttggggaatgaatattcattttctactactgcttcggatttgt 107  Q
    ||||| |||||||| | ||||||| ||||  ||||||||||||||||||||| ||| |||||| || |||||||||||||||    
T  9343926 tgggtgaagttaacaactttaggggatagtgttttgttcttggggaatgaatgttcgttttctgcttctgcttcggatttgt 9343845  T

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Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 22 - 107
Target Start/End: Complemental strand, 9448399 - 9448314
Alignment:
Q  22 gaaatgggtaaagttaacgagtttagggaatagaattttgttcttggggaatgaatattcattttctactactgcttcggatttgt 107  Q
    ||||||||| |||||||| | ||||||| ||||  ||||||||||||||||||| | ||| |||||| || |||||||||||||||    
T  9448399 gaaatgggtgaagttaacaactttaggggatagtgttttgttcttggggaatgactgttcgttttctgcttctgcttcggatttgt 9448314  T

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Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 40 - 135
Target Start/End: Original strand, 9494857 - 9494952
Alignment:
Q  40 gagtttagggaatagaattttgttcttggggaatgaatattcattttctactactgcttcggatttgtctattgccaaagggaattgtgtaatctt 135  Q
    |||||||||| ||||  |||||||||||||||||| || ||| |||||| || ||||||| |||||||   || |||||||||||||||| |||||    
T  9494857 gagtttaggggatagggttttgttcttggggaatggatgttcgttttctgcttctgcttctgatttgtgcgtttccaaagggaattgtgtcatctt 9494952  T

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Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 57 - 134
Target Start/End: Complemental strand, 9329886 - 9329809
Alignment:
Q  57 ttttgttcttggggaatgaatattcattttctactactgcttcggatttgtctattgccaaagggaattgtgtaatct 134  Q
    |||||||||||||||||| |||||| |||||| || ||||||| || |||  | ||||||| ||||||||||| ||||    
T  9329886 ttttgttcttggggaatggatattcgttttctgcttctgcttccgagttgggttttgccaatgggaattgtgtcatct 9329809  T

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Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 135
Target Start/End: Original strand, 9617494 - 9617607
Alignment:
Q  22 gaaatgggtaaagttaacgagtttagggaatagaattttgttcttggggaatgaatattcattttctactactgcttcggatttgtctattgccaaaggg 121  Q
    ||||||||| ||||| |  | ||||||| ||||  |||||||| | | ||||| || |||||||||| || ||||||| ||||||| | || ||||||||    
T  9617494 gaaatgggtgaagttgaaaaatttaggggatagggttttgttccttgtgaatggatgttcattttctgcttctgcttcagatttgtgtgtttccaaaggg 9617593  T
Q  122 aattgtgtaatctt 135  Q
    |||||||| |||||    
T  9617594 aattgtgtcatctt 9617607  T

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Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 129
Target Start/End: Complemental strand, 9397869 - 9397763
Alignment:
Q  23 aaatgggtaaagttaacgagtttagggaatagaattttgttcttggggaatgaatattcattttctactactgcttcggatttgtctattgccaaaggga 122  Q
    ||||| || ||||| | |||||||||| ||||  | |||||||| | ||||| || |||||||||  || | |||| |||||||| | ||||||||||||    
T  9397869 aaatgcgtgaagttgatgagtttaggggatagggtcttgttctttgtgaatggatgttcattttccgcttcagctttggatttgtgtgttgccaaaggga 9397770  T
Q  123 attgtgt 129  Q
    |||||||    
T  9397769 attgtgt 9397763  T

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Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 57 - 134
Target Start/End: Complemental strand, 9336590 - 9336513
Alignment:
Q  57 ttttgttcttggggaatgaatattcattttctactactgcttcggatttgtctattgccaaagggaattgtgtaatct 134  Q
    |||||||||||||||||| || ||| |||||| || ||||||| || |||  | ||||||| ||||||||||| ||||    
T  9336590 ttttgttcttggggaatggatgttcgttttctgcttctgcttccgagttgggttttgccaatgggaattgtgtcatct 9336513  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 57 - 135
Target Start/End: Original strand, 20694367 - 20694445
Alignment:
Q  57 ttttgttcttggggaatgaatattcattttctactactgcttcggatttgtctattgccaaagggaattgtgtaatctt 135  Q
    ||||||| |||||||||| || ||| |||||| || ||||||||||||||| | ||||||||||||||||||| |||||    
T  20694367 ttttgtttttggggaatggatgttcgttttctgcttctgcttcggatttgtgtgttgccaaagggaattgtgtcatctt 20694445  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 44 - 129
Target Start/End: Complemental strand, 18991267 - 18991182
Alignment:
Q  44 ttagggaatagaattttgttcttggggaatgaatattcattttctactactgcttcggatttgtctattgccaaagggaattgtgt 129  Q
    |||||||||||  |||||||||||||||||| || ||| |||||| || ||||||| ||||| ||| ||| |||||||||||||||    
T  18991267 ttagggaatagggttttgttcttggggaatggatgttcgttttctgcttctgcttctgatttatctgttgtcaaagggaattgtgt 18991182  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 57 - 135
Target Start/End: Complemental strand, 4439910 - 4439832
Alignment:
Q  57 ttttgttcttggggaatgaatattcattttctactactgcttcggatttgtctattgccaaagggaattgtgtaatctt 135  Q
    ||||||| |||||||||| || ||| |||||| || ||||||||||||||| | || | |||||||||||||| |||||    
T  4439910 ttttgtttttggggaatggatgttcgttttctgcttctgcttcggatttgtgtgtttctaaagggaattgtgtcatctt 4439832  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 135
Target Start/End: Complemental strand, 4428715 - 4428603
Alignment:
Q  23 aaatgggtaaagttaacgagtttagggaatagaattttgttcttggggaatgaatattcattttctactactgcttcggatttgtctattgccaaaggga 122  Q
    |||||||| || || |||||||| ||| ||||  ||||||| |||||||||| || ||  |||||| |  ||||||| || |||||| || | |||||||    
T  4428715 aaatgggtgaaattgacgagtttgggggatagggttttgtttttggggaatggatgtttgttttctgcctctgcttctgagttgtctgttactaaaggga 4428616  T
Q  123 attgtgtaatctt 135  Q
    ||||||| |||||    
T  4428615 attgtgtcatctt 4428603  T

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Target: chr7 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 40 - 135
Target Start/End: Complemental strand, 3695757 - 3695662
Alignment:
Q  40 gagtttagggaatagaattttgttcttggggaatgaatattcattttctactactgcttcggatttgtctattgccaaagggaattgtgtaatctt 135  Q
    |||||||||| ||||| |||||||||| || |    || |||||||||| ||| ||||||||||||||||  |||||||||||||||||| |||||    
T  3695757 gagtttaggggatagagttttgttcttcggtatcatatgttcattttctgctattgcttcggatttgtctgctgccaaagggaattgtgtgatctt 3695662  T

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Target: chr6 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 26 - 129
Target Start/End: Complemental strand, 7046920 - 7046817
Alignment:
Q  26 tgggtaaagttaacgagtttagggaatagaattttgttcttggggaatgaatattcattttctactactgcttcggatttgtctattgccaaagggaatt 125  Q
    ||||| |||||||||||||||||| ||| | |||||||||||||||   ||| ||| |||||| || ||  ||| ||||||| | |||||||||||||||    
T  7046920 tgggtgaagttaacgagtttaggggataaagttttgttcttggggataaaatgttcgttttctgcttctttttcagatttgtatgttgccaaagggaatt 7046821  T
Q  126 gtgt 129  Q
    ||||    
T  7046820 gtgt 7046817  T

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