View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1946_low_164 (Length: 209)
Name: NF1946_low_164
Description: NF1946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1946_low_164 |
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Alignment Details
Target: chr1 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 12 - 193
Target Start/End: Original strand, 16789695 - 16789879
Alignment:
| Q |
12 |
gagatgaatcgaaaaaataattacctaaactctcaaatacttagtgtatggattccaat---taaattatccttcgaaggaacatagccatgttcaaata |
108 |
Q |
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| T |
16789695 |
gagatgaatcgaaaaaataattacctaaactctcaaatacggagtgtatggattccaataattaaattatccttcgaaggaatatagccatgttcaaata |
16789794 |
T |
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| Q |
109 |
aatattagcaaaaatgtacagaatgcaatatttaaagtgaaatcatgaaaccaattaaataaatgaaatagttgattaaaaaatt |
193 |
Q |
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| T |
16789795 |
agtattagcaaaaatgtacagaatgcaatatttaaagagaaatcatgaaaccaattagataaatgaaatagttgattaaaaaatt |
16789879 |
T |
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