View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1946_low_17 (Length: 515)
Name: NF1946_low_17
Description: NF1946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1946_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 188; Significance: 1e-102; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 298 - 496
Target Start/End: Original strand, 40462809 - 40463008
Alignment:
| Q |
298 |
ttgtttaataatgtgtttatatgtcaactaaattcaatttgatcgtatcaactataagttcaatttgataatataaactataaatttatttatactttat |
397 |
Q |
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| T |
40462809 |
ttgtttaataatgtgtttatatgtcaactaaattcaatttgatcgtatcaactataagttcaatttgataatataaactataaatttatttatactttat |
40462908 |
T |
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| Q |
398 |
ctactataaattcattagctgtctactagtttatc-actataaactccttctccatctaatcacttttcaattaatgggtgtagcctaatctttattttt |
496 |
Q |
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| T |
40462909 |
ctactataaattcattagctgtctactagtttatctactataaactccttctccatctaatcacttttcaattaatgggtgtaccctaatctttattttt |
40463008 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 194 - 250
Target Start/End: Original strand, 40462684 - 40462740
Alignment:
| Q |
194 |
taaagtgttattttaagattatatttcaagtaacgtttgaatttctaacttatgata |
250 |
Q |
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| T |
40462684 |
taaagtattattttaagattatatttcaagtaacgtttgaatttctaacttatgata |
40462740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 40462480 - 40462531
Alignment:
| Q |
1 |
attcatcaagagagagaacgaaagctgcccttatcatcggaccctatatctt |
52 |
Q |
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| T |
40462480 |
attcatcaagagagagaacgaaagctgcccttatcatgggaccctatatctt |
40462531 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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