View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1946_low_20 (Length: 498)
Name: NF1946_low_20
Description: NF1946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1946_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 453; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 16 - 480
Target Start/End: Complemental strand, 52861985 - 52861521
Alignment:
| Q |
16 |
atcattggaactcagattaagatactttagactaacaatgctgctgaaaccctcaggaacagaaccattcaaatggttttcatcaagtgccacaacttcc |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52861985 |
atcattggaactcagattaagatactttagactaacaatgctgctgaaaccctcaggaacagaaccattcaaatggttttcatcaagtgccacaacttcc |
52861886 |
T |
|
| Q |
116 |
aaactaggtaaaccaaaaacctcaacaggtaactcacctgaaagattttgtttgcttaaatccaacactctcagtttcatcaaattccccaatgtagctg |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52861885 |
aaactaggtaaaccaaaaacctcaacaggtaactcacctgaaagattttgtttgcttaaatccaacactctcagtttcatcaaattccccaatgtagctg |
52861786 |
T |
|
| Q |
216 |
gaacactaccagaaaagccacagtgactcaaattaagaacctgcaaagcggtcaagtctccaatttgaaacgaaacttgaccggagaatctattattgct |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
52861785 |
gaacactaccagaaaagccacagtgactcaaattaagaacctgcaaagcggtcaagtctccaatttgaaacgaaacttgactggagaatctattattgct |
52861686 |
T |
|
| Q |
316 |
gagattcaaaacactcatgttacctaactgcatgatttccgaaagcaaaatcccattcaatttattgttgcttaaatccaaaatctctaactcattaagc |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52861685 |
gagattcaaaacactcatgttacctaactgcatgatttccgaaggcaaaatcccattcaatttattgttgcttaaatccaaaatctctaactcattaagc |
52861586 |
T |
|
| Q |
416 |
attccataactttttggaattgaaccagtaaaatagttaccgccaagagataactccttcaaact |
480 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
52861585 |
attccataactttttggaattgaaccagtaaaatagttaccaccaagagataactccttcaaact |
52861521 |
T |
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