View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1946_low_21 (Length: 497)
Name: NF1946_low_21
Description: NF1946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1946_low_21 |
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Alignment Details
Target: chr7 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 16 - 484
Target Start/End: Complemental strand, 4059388 - 4058917
Alignment:
| Q |
16 |
atagacggtgaaatggtgagtagaacaataggaatgtctaaattcccacttttgcatcatataggaatggatgcgttcgggcatcgagggattcaattgt |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | |||||||||||||||||||||||| |
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| T |
4059388 |
atagacggtgaaatggtgagtagaacaataggaatgtctaaattcccacttttgcatcatataggaacgggcgggttcgggcatcgagggattcaatt-- |
4059291 |
T |
|
| Q |
116 |
ttcatccggacccccttgtgtgaaccctgtctaaaccgtaactgtgtttgttggacccgtggacctgttttaaactgacaatttctcttttttcagtccg |
215 |
Q |
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||||| |||||| | ||||| || ||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
4059290 |
-tcatctggacccgcctgtgtaaatcctatctaaaccgtaaacgtgtttgttggacccgtggacctgttttaaactgacaatttctctttttttagtccg |
4059192 |
T |
|
| Q |
216 |
ggttgggcggattttctcgggttgtaggttttttgtccacccttactcatgcttaccaattgcttaagctcgatttagtga----aattaatggattaac |
311 |
Q |
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|||||||| |||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
4059191 |
ggttgggcagattttctcgggttgtaggttttt-gtccacccttactcttgcttaccaattgcttaagctcgatttagtgagtgaaattaatggattaac |
4059093 |
T |
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| Q |
312 |
tcttttatcggggaaaatagtagcaaaatgagttagaaacatatacactgtttgattttaagttatattatatggtcataactgccgtgttatgtattga |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4059092 |
tcttttatcggggaaaatagtagcaaaatgagttagaaacatatacactgtttgattttaagttatattatatggtcataactgccgtgttatgtattga |
4058993 |
T |
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| Q |
412 |
ttgaatttcatgttgatatatcat---ataactttcatacttgactatattgtgcttaagtgaaatatttgttgtt |
484 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4058992 |
ttgaatttcatgttgatatatcatataataactttcatacttgactatattgtgcttaagtgaaatatttgttgtt |
4058917 |
T |
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