View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1946_low_23 (Length: 487)

Name: NF1946_low_23
Description: NF1946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1946_low_23
NF1946_low_23
[»] chr3 (2 HSPs)
chr3 (18-463)||(26652620-26653051)
chr3 (266-350)||(26646193-26646277)
[»] chr8 (3 HSPs)
chr8 (16-130)||(43539100-43539214)
chr8 (18-130)||(59547-59659)
chr8 (18-129)||(43539816-43539927)
[»] chr4 (4 HSPs)
chr4 (18-102)||(29980264-29980348)
chr4 (18-96)||(39268866-39268944)
chr4 (18-127)||(39267720-39267828)
chr4 (52-109)||(9045450-9045507)
[»] chr7 (4 HSPs)
chr7 (18-127)||(8484222-8484331)
chr7 (37-129)||(24934800-24934892)
chr7 (18-84)||(8075526-8075592)
chr7 (60-128)||(8077654-8077722)


Alignment Details
Target: chr3 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 18 - 463
Target Start/End: Original strand, 26652620 - 26653051
Alignment:
Q  18 taaactgataacaaagatacacattcaaggactgttttgtattttatcctaagtcagagactaaagtgacagcgagatgcaaagttagagactcaaatga 117  Q
    ||||||||||||| ||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| || ||| ||| |||    
T  26652620 taaactgataacagagatacacattcatggactattttgtattttatcctaagtcagggactaaagtgacagcgagatgcaaagtcagggacccaagtga 26652719  T
Q  118 ctatttactcaattttattattgtcacgacaccgataagaattagaatatcagcacagcttgtactgnnnnnnnnnntggaatgccatcacacacacacg 217  Q
    |||||||||||||||||||||||||| |||||| |||||||| ||||||||| |||||||||||||                ||||||||||||||||||    
T  26652720 ctatttactcaattttattattgtcatgacaccaataagaataagaatatcatcacagcttgtact----------------tgccatcacacacacacg 26652803  T
Q  218 ccaggcaaga--agaacggacaagaataccnnnnnnnnnnnnnnnnnnnnttgcccctaaacttaattgaaatggcaccttctttaatgtgagaattact 315  Q
    ||||||||||  ||||||||||||||||||                    |||||||||||||||||| |||||||||||| ||||||||||||||||||    
T  26652804 ccaggcaagagaagaacggacaagaataccaaagaaggaaaaacacaaaattgcccctaaacttaattcaaatggcaccttgtttaatgtgagaattact 26652903  T
Q  316 agcaacaaaggatacattggggttttcacacattcaccattcattttcccttggtatacactgtagtacaatttttgtggccaataacgtagcctttcca 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |||||||||||||||    
T  26652904 agcaacaaaggatacattggggttttcacacattcaccattcattctcccttcgtatacactgtagtacaatttttgtggccaacaacgtagcctttcca 26653003  T
Q  416 aattaagcaatgtaaccatttttgttttgaaagttgagtgttataccc 463  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||    
T  26653004 aattaagcaaagtaaccatttttgttttgaaagttgagtgttataccc 26653051  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 266 - 350
Target Start/End: Original strand, 26646193 - 26646277
Alignment:
Q  266 ttgcccctaaacttaattgaaatggcaccttctttaatgtgagaattactagcaacaaaggatacattggggttttcacacattc 350  Q
    |||||||||||||||||| ||||||||| || |||  | ||| ||||||||| | ||||||||||||  ||||||||||||||||    
T  26646193 ttgcccctaaacttaattaaaatggcacattgtttgttttgaaaattactagaagcaaaggatacatctgggttttcacacattc 26646277  T

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Target: chr8 (Bit Score: 63; Significance: 3e-27; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 16 - 130
Target Start/End: Complemental strand, 43539214 - 43539100
Alignment:
Q  16 attaaactgataacaaagatacacattcaaggactgttttgtattttatcctaagtcagagactaaagtgacagcgagatgcaaagttagagactcaaat 115  Q
    ||||||||||||||| | ||||||||||| ||||| ||||||| |||||||| |||| | |||||||||||||||||| ||||||||||| |||  || |    
T  43539214 attaaactgataacagatatacacattcagggactattttgtagtttatcctgagtcggggactaaagtgacagcgaggtgcaaagttagggaccaaagt 43539115  T
Q  116 gactatttactcaat 130  Q
    |||||||||||||||    
T  43539114 gactatttactcaat 43539100  T

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Target: chr8; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 18 - 130
Target Start/End: Complemental strand, 59659 - 59547
Alignment:
Q  18 taaactgataacaaagatacacattcaaggactgttttgtattttatcctaagtcagagactaaagtgacagcgagatgcaaagttagagactcaaatga 117  Q
    ||||||||| ||| |  ||| |||||| ||||| ||||||| |||||||| |||||| |||||||||||||||||| || ||||| || |||| || |||    
T  59659 taaactgatgacagatctacccattcagggactattttgtagtttatcctgagtcagggactaaagtgacagcgaggtgtaaagtcagggactaaagtga 59560  T
Q  118 ctatttactcaat 130  Q
    |||||||||||||    
T  59559 ctatttactcaat 59547  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 18 - 129
Target Start/End: Original strand, 43539816 - 43539927
Alignment:
Q  18 taaactgataacaaagatacacattcaaggactgttttgtattttatcctaagtcagagactaaagtgacagcgagatgcaaagttagagactcaaatga 117  Q
    ||||||||||||| |  | || ||||||||||| ||||||| |||||||| |||  | ||||||| |||||||||| |||||||| || |||  || ||     
T  43539816 taaactgataacagatgtgcatattcaaggactattttgtagtttatcctgagtaggggactaaaatgacagcgaggtgcaaagtcagggaccaaagtgt 43539915  T
Q  118 ctatttactcaa 129  Q
    ||||||||||||    
T  43539916 ctatttactcaa 43539927  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 18 - 102
Target Start/End: Original strand, 29980264 - 29980348
Alignment:
Q  18 taaactgataacaaagatacacattcaaggactgttttgtattttatcctaagtcagagactaaagtgacagcgagatgcaaagt 102  Q
    ||||||||||||||| ||||||||||| ||||| ||||||| |||||| | |||  | |||||||||||||||||| || |||||    
T  29980264 taaactgataacaaatatacacattcagggactattttgtagtttatcttgagttggggactaaagtgacagcgaggtgtaaagt 29980348  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 18 - 96
Target Start/End: Original strand, 39268866 - 39268944
Alignment:
Q  18 taaactgataacaaagatacacattcaaggactgttttgtattttatcctaagtcagagactaaagtgacagcgagatg 96  Q
    ||||||||||||| |||||||| |||| | ||| | ||||||||||| |  |||| |||||||||||||||||||||||    
T  39268866 taaactgataacagagatacacgttcaggaactttattgtattttattcagagtcggagactaaagtgacagcgagatg 39268944  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 127
Target Start/End: Complemental strand, 39267828 - 39267720
Alignment:
Q  18 taaactgataacaaagatacacattcaaggactgttttgtattttatcctaagtcagagactaaagtgacagcgagatgcaaagttagagactcaaatga 117  Q
    ||||||||||||| |  |||||||||| | ||| | |||||||||||||| | || | |||| ||||||||||||| |||||||| || || | ||||||    
T  39267828 taaactgataacagatgtacacattcaggcactttattgtattttatcctcaatcggcgactgaagtgacagcgaggtgcaaagtcag-gaataaaatga 39267730  T
Q  118 ctatttactc 127  Q
    ||||||||||    
T  39267729 ctatttactc 39267720  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 52 - 109
Target Start/End: Original strand, 9045450 - 9045507
Alignment:
Q  52 ttttgtattttatcctaagtcagagactaaagtgacagcgagatgcaaagttagagac 109  Q
    |||||||||||||| | || ||||||||| ||||||| |||| ||||| |||||||||    
T  9045450 ttttgtattttatcatgagccagagactatagtgacaacgaggtgcaatgttagagac 9045507  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 127
Target Start/End: Original strand, 8484222 - 8484331
Alignment:
Q  18 taaactgataacaaagatacacattcaaggactgttttgtattttatcctaagtcagagactaaagtgacagcgagatgcaaagttagagactcaaatga 117  Q
    |||||||||||||||  |||||||||| ||||| |||| || |||||| |||||| |  |||| ||||||| |||| |||||| | ||||||  || |||    
T  8484222 taaactgataacaaatttacacattcatggactattttatagtttatcttaagtcgggaactagagtgacaacgaggtgcaaaatcagagaccaaagtga 8484321  T
Q  118 ctatttactc 127  Q
    ||||||||||    
T  8484322 ctatttactc 8484331  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 37 - 129
Target Start/End: Complemental strand, 24934892 - 24934800
Alignment:
Q  37 cacattcaaggactgttttgtattttatcctaagtcagagactaaagtgacagcgagatgcaaagttagagactcaaatgactatttactcaa 129  Q
    ||||||||| |||| |||||||||| ||||||||||||||||    |||||||||| ||||| |||||| |||  || |||| ||||||||||    
T  24934892 cacattcaatgactattttgtatttaatcctaagtcagagacctttgtgacagcgatatgcagagttagggaccaaagtgaccatttactcaa 24934800  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 84
Target Start/End: Complemental strand, 8075592 - 8075526
Alignment:
Q  18 taaactgataacaaagatacacattcaaggactgttttgtattttatcctaagtcagagactaaagt 84  Q
    ||||||||||||| |  |||||||||||||| | ||||||| |||||| |||||| |||||||||||    
T  8075592 taaactgataacagatctacacattcaaggattattttgtagtttatcataagtcggagactaaagt 8075526  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 60 - 128
Target Start/End: Original strand, 8077654 - 8077722
Alignment:
Q  60 tttatcctaagtcagagactaaagtgacagcgagatgcaaagttagagactcaaatgactatttactca 128  Q
    |||||||| |||| ||||||||||||||| |||| || |||||| | |||  |||||||||||||||||    
T  8077654 tttatcctgagtcggagactaaagtgacaacgaggtgtaaagttggggaccaaaatgactatttactca 8077722  T

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