View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1946_low_26 (Length: 473)
Name: NF1946_low_26
Description: NF1946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1946_low_26 |
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Alignment Details
Target: chr3 (Bit Score: 304; Significance: 1e-171; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 454
Target Start/End: Original strand, 25043916 - 25044385
Alignment:
| Q |
1 |
atggttatataaagattatgtgattatggtgcatggttatataaaggaactcacaaagtcacatgctttaacgaggatagtgtatataaagatttgaatc |
100 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
25043916 |
atggttatataaagattatgtgattatgctgcatggttatataaaggaactcacaaagtcgtatgctttaacgaggatagtgtatataaagatttgaatc |
25044015 |
T |
|
| Q |
101 |
aaattcaatataaaatatnnnnnnnnnnn---------tgacagaacaaaattcataaaacttaaaa-------ttgnnnnnnnnnnnnngctgaataca |
184 |
Q |
| |
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||||||||||| |||||| ||||||||||||||||||||||||||||| ||| |||||||||| |
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| T |
25044016 |
aaattcaatatgaaatataaaaaaaataaaaaaaaaaatgacagaacaaaattcataaaacttaaaattggtttttggtttttggtttttgctgaataca |
25044115 |
T |
|
| Q |
185 |
taaggaaaattatacatttccataatccataaaataagtgtattcatggagtcttcaattagaataatacacacaaaccttaaaactaacataaattcat |
284 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25044116 |
taaggaaaattatacatttccataatccataaaataagtgtattcatggagtcttcaattagaataatacacacaaaccttaaaactaacataaattcat |
25044215 |
T |
|
| Q |
285 |
aaaagccatagaaaaaagaccctattcatagttctttataggcttagtaccatcgatttgttgagtaaatgataaacatcaaaagggtacagaaggatca |
384 |
Q |
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|||||| ||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||| |
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| T |
25044216 |
aaaagctatagaaaaaagactctattcatagttctttataggcttagtaccatcaatttgttgagtaaacgataaacattaaaagggtacagaaggatca |
25044315 |
T |
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| Q |
385 |
agttgtttgcatagttcaagataagttaaataaagaaccctatttttggcacctgttctatgatggttgt |
454 |
Q |
| |
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| T |
25044316 |
agttgtttgcatagttcaagataagttaaataaagaaccctatttttggcacctgttctatgatggttgt |
25044385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 380 - 439
Target Start/End: Complemental strand, 54479573 - 54479514
Alignment:
| Q |
380 |
gatcaagttgtttgcatagttcaagataagttaaataaagaaccctatttttggcacctg |
439 |
Q |
| |
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|||||||||||||||| ||| |||||||||||||||||||||| ||||| |||||||||| |
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| T |
54479573 |
gatcaagttgtttgcagagtccaagataagttaaataaagaactctattcttggcacctg |
54479514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 389 - 437
Target Start/End: Original strand, 25040582 - 25040630
Alignment:
| Q |
389 |
gtttgcatagttcaagataagttaaataaagaaccctatttttggcacc |
437 |
Q |
| |
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||||||||||||||| |||||| ||||||||||| ||||| |||||||| |
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| T |
25040582 |
gtttgcatagttcaaaataagtcaaataaagaactctattcttggcacc |
25040630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 151; Significance: 1e-79; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 41 - 454
Target Start/End: Original strand, 28649464 - 28649862
Alignment:
| Q |
41 |
ataaaggaactcacaaagtcacatgctttaacgaggatagtgtatataaagatttgaatcaaattcaatataaaatatnnnnnnnnnnntgacagaacaa |
140 |
Q |
| |
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|||||||||||||||||||| |||||||| | ||||| |||||||||| | |||||||||| ||||||||| ||| || ||||||||||| |
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| T |
28649464 |
ataaaggaactcacaaagtcgcatgctttgatgaggagagtgtatatataaatttgaatcatattcaatatgaaacataaaaaa-----tgacagaacaa |
28649558 |
T |
|
| Q |
141 |
aattcataaaacttaaaattgnnnnnnnnnnnnngctgaatacataaggaaaattatacatttccataatccataaaataagtgtattcatggagtcttc |
240 |
Q |
| |
|
||||||||||| ||||||||| ||| ||| ||||||||||||||||||||||||||||||||| ||||| | ||||||||||||| | |
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| T |
28649559 |
aattcataaaatttaaaattgtttt---------gctaaattcataaggaaaattatacatttccataatccatactataagcgaattcatggagtctgc |
28649649 |
T |
|
| Q |
241 |
aa-ttagaataatacacacaaaccttaaaactaacataaattcataaaagccatagaaaaaagaccctattcatagttctttataggcttagtaccatcg |
339 |
Q |
| |
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|| ||||||| ||||||||||||||||||||||||||||||| ||||||| |||||||| |||| ||||||||||||||||||| |||||| | |
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| T |
28649650 |
aaattagaattatacacacaaaccttaaaactaacataaatttataaaagaaatagaaaa--gaccacattcatagttctttataggtatagtactgcca |
28649747 |
T |
|
| Q |
340 |
atttgttgagtaaatgataaacatcaaaagggtacagaaggatcaagttgtttgcatagttcaagataagttaaataaagaacccta-tttttggcacct |
438 |
Q |
| |
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|||||||||| ||| ||||||||||||||||||| | || ||||||||| ||||||||||||||||||||||||||||||||| ||| ||||||||| | |
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| T |
28649748 |
atttgttgagcaaacgataaacatcaaaagggtatataatgatcaagttatttgcatagttcaagataagttaaataaagaactctattttttggca-tt |
28649846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 367 - 450
Target Start/End: Original strand, 10124174 - 10124257
Alignment:
| Q |
367 |
aagggtacagaaggatcaagttgtttgcatagttcaagataagttaaataaagaaccctatttttggcacctgttctatgatgg |
450 |
Q |
| |
|
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |||| ||||||| |
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| T |
10124174 |
aagggtagggaaggatcaagttgtttgcaaagttcaagataagttaaataaagaaccctattcttggcaccggttcgatgatgg |
10124257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 367 - 454
Target Start/End: Complemental strand, 21393282 - 21393195
Alignment:
| Q |
367 |
aagggtacagaaggatcaagttgtttgcatagttcaagataagttaaataaagaaccctatttttggcacctgttctatgatggttgt |
454 |
Q |
| |
|
|||||| |||||||||||||||||| ||||| ||||| |||||| ||||||||||| ||||| |||||||| |||| |||||| |||| |
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| T |
21393282 |
aagggtccagaaggatcaagttgttggcataattcaaaataagtcaaataaagaactctattcttggcaccggttcgatgatgattgt |
21393195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 374 - 454
Target Start/End: Complemental strand, 21422589 - 21422509
Alignment:
| Q |
374 |
cagaaggatcaagttgtttgcatagttcaagataagttaaataaagaaccctatttttggcacctgttctatgatggttgt |
454 |
Q |
| |
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|||||||||||||||| | ||||| ||||| |||||| ||||||||||| |||| ||||||||||| | |||||| |||| |
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| T |
21422589 |
cagaaggatcaagttggtggcataattcaaaataagtcaaataaagaactgtattcttggcacctgtgcgatgatgattgt |
21422509 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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