View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1946_low_29 (Length: 452)
Name: NF1946_low_29
Description: NF1946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1946_low_29 |
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Alignment Details
Target: chr7 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 234 - 442
Target Start/End: Original strand, 3553473 - 3553681
Alignment:
| Q |
234 |
atgttgttcagagccttgactgttaacttgatcctgcagagctctgtcttcatatccgtgtttgacttcagatcagactttgacttcataacttgatgta |
333 |
Q |
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| T |
3553473 |
atgttgttcagagccttgactattaacttgatcctgcagagctctgtcttcagatccgtgtttgacttcagatcagagtttgacttcataacttgatgta |
3553572 |
T |
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| Q |
334 |
aatttggtaaaagatttaaccttttgttgatcatcttcaaatcagagctttgtcacaagaggctttgtcttggatccagcactataacgatgatgttaat |
433 |
Q |
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| T |
3553573 |
aatttggtaaaagatttaaccttttgtcgatcatcttcaaatcagagctttgtcacaagaggctttgtcttggatccagcactataacgatgatgttaat |
3553672 |
T |
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| Q |
434 |
aatagagta |
442 |
Q |
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||||||||| |
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| T |
3553673 |
aatagagta |
3553681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 10 - 236
Target Start/End: Original strand, 3545965 - 3546191
Alignment:
| Q |
10 |
atcatcaattatgtaatgttaaatatgcaaaaatccgttaaatatgtttcaccacgcccgttgcaaatattccgttcttatatatgtggatgcaaatttt |
109 |
Q |
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| T |
3545965 |
atcagcaattatgtaatgttaaatatgccaaaatccgttaaatatgtt-caccacgcccgttgcaaatattccgtgcttatatatgtggatgcaaatttt |
3546063 |
T |
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| Q |
110 |
atgtatcgatataattatatatagactttcaatcaaatttca-nnnnnnnnnnnnnaaatatcaacatgtggttgttagatcatgatcgtaattaatatt |
208 |
Q |
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| T |
3546064 |
atgtatcgatataattgtatacagattttcaatcaaatttcatatttattttttttaaatatcaacatgtggttgttagatcatgatcgtaattaatatt |
3546163 |
T |
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| Q |
209 |
ggatannnnnnnaagggagtattgaatg |
236 |
Q |
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| T |
3546164 |
ggatatttttttaagggagtattgaatg |
3546191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 294 - 388
Target Start/End: Original strand, 10252634 - 10252728
Alignment:
| Q |
294 |
tttgacttcagatcagactttgacttcataacttgatgtaaatttggtaaaagatttaaccttttgttgatcatcttcaaatcagagctttgtca |
388 |
Q |
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|||| |||||||||||| ||| |||||||||||||| | | ||| | | || ||| || ||||||| |||||||||| ||||||||||||||| |
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| T |
10252634 |
tttgccttcagatcagagcttgttttcataacttgatgcacacttgattagagctttgactttttgttcatcatcttcagatcagagctttgtca |
10252728 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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