View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1946_low_3 (Length: 758)
Name: NF1946_low_3
Description: NF1946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1946_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 724; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 724; E-Value: 0
Query Start/End: Original strand, 1 - 748
Target Start/End: Original strand, 48889687 - 48890434
Alignment:
| Q |
1 |
aacggttcaaatattgtcaccactgtaaaccttggctttgttgtgacagcgtctactatttcacctgatggcagtgaagcaattgtaggtgggcaagatg |
100 |
Q |
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| T |
48889687 |
aacggttcaaatattgtcaccactgtaaaccttggctttgttgtgacagcgtctactatttcacctgatggcagtgaagcaattgtaggtgggcaagatg |
48889786 |
T |
|
| Q |
101 |
gtaagctgcatatttattctatctcaggagatacacttacagaacagattgttcttgagaagcaccgaggagcaatcagtgtaatcaaatattctccgga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
48889787 |
gtaagctgcatatttattctatctcaggagatacacttacagaacaaattgttcttgagaagcaccgaggagcaatcagtgtaatcaaatattctccaga |
48889886 |
T |
|
| Q |
201 |
tgtttccatgtttgcatcagctgatcttaatcgtgaagctgttgtgtgggactgtgcttccagagaggtaacttgagcctgatatgactgttccatgaag |
300 |
Q |
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| T |
48889887 |
tgtttccatgtttgcatcagctgatctaaatcgtgaagctgttgtgtgggactgtgcttccagagaggtaacttgagcctgatatgactgttccatgaag |
48889986 |
T |
|
| Q |
301 |
ttgaaatgtcttgtgcctgaatgctttgtttgtcttatatataccaaattttcctatgtgaaatgagaaatacatgacttatactctcatgattgtaaca |
400 |
Q |
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|||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48889987 |
ttgatatgtcttgtgcctgaatgctttgtttgtcctatatataccaaattttcctatgtgaaatgagaaatacatgacttatactctcatgattgtaaca |
48890086 |
T |
|
| Q |
401 |
ttattgcttcaattatcatgatgtacacttgtttttgtcataacttactgaaaaatgccgttgctaaataaatcttcctttctctttcaggtggtgctta |
500 |
Q |
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| T |
48890087 |
ttattgcttcaattatcatgatgtacacttgtttttgtcataacttactgaaaaatgtcgttgctaaataaatcttcctttctctttcaggtggtgctta |
48890186 |
T |
|
| Q |
501 |
ataacatgttgtttcacactgcacgtgtaaactgtcttgcttggtcacctaatagcaaactggtagctactggttcacttgatacatgtgttattgtata |
600 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48890187 |
ataacatgttgtttcacactgcacgtgtaaactgtcttgcttggtcacctaatagcaaactggtagctactggttcacttgatacatgtgttattgtata |
48890286 |
T |
|
| Q |
601 |
cgaaattggaaagccagcatcaagccgcagaaccataaaaggggctcatttaggtggagtgtatggcttgacttttattgagccagaaagagtggtcagt |
700 |
Q |
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| T |
48890287 |
cgaaattggaaagccagcatcaagccgcagaaccataaaaggggctcatttaggtggagtgtatggcttgacttttattgagccagaaagagtggtcagt |
48890386 |
T |
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| Q |
701 |
tcgggagaagatagttgcgttcgtgtttgggatttaatttcagaataa |
748 |
Q |
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| T |
48890387 |
tcgggagaagatagttgcgttcgtgtttgggatttaatttcagaataa |
48890434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 190 - 266
Target Start/End: Complemental strand, 45095088 - 45095012
Alignment:
| Q |
190 |
tattctccggatgtttccatgtttgcatcagctgatcttaatcgtgaagctgttgtgtgggactgtgcttccagaga |
266 |
Q |
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|||||||| ||| |||| ||||||||||||| ||| ||||||| ||||||||||| |||||| |||| ||| |||| |
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| T |
45095088 |
tattctccagatttttcaatgtttgcatcaggggatgttaatcgagaagctgttgtttgggaccgtgcctcccgaga |
45095012 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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