View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1946_low_30 (Length: 451)

Name: NF1946_low_30
Description: NF1946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1946_low_30
NF1946_low_30
[»] chr6 (14 HSPs)
chr6 (17-387)||(5358335-5358704)
chr6 (17-83)||(5422040-5422106)
chr6 (379-433)||(5358900-5358954)
chr6 (17-82)||(5070618-5070683)
chr6 (17-73)||(5077284-5077340)
chr6 (17-81)||(5394183-5394247)
chr6 (17-90)||(5107981-5108054)
chr6 (17-73)||(5092785-5092841)
chr6 (17-73)||(5160699-5160755)
chr6 (17-82)||(5272848-5272913)
chr6 (17-74)||(5340400-5340457)
chr6 (17-90)||(5429429-5429502)
chr6 (17-82)||(5443942-5444007)
chr6 (17-81)||(5185057-5185121)
[»] chr8 (2 HSPs)
chr8 (292-368)||(12283696-12283772)
chr8 (292-348)||(24213796-24213854)
[»] chr4 (4 HSPs)
chr4 (17-71)||(4332495-4332549)
chr4 (17-71)||(4356598-4356652)
chr4 (17-71)||(6749817-6749871)
chr4 (41-73)||(6592337-6592369)
[»] chr7 (2 HSPs)
chr7 (295-348)||(545778-545831)
chr7 (17-81)||(34719964-34720028)
[»] chr3 (5 HSPs)
chr3 (301-368)||(6833532-6833599)
chr3 (295-344)||(26317895-26317944)
chr3 (306-347)||(26317789-26317830)
chr3 (370-424)||(26317799-26317855)
chr3 (292-329)||(26447655-26447692)
[»] chr2 (2 HSPs)
chr2 (291-368)||(43572283-43572360)
chr2 (370-424)||(43572209-43572265)
[»] chr1 (2 HSPs)
chr1 (292-357)||(8010063-8010128)
chr1 (292-348)||(19316023-19316079)
[»] chr5 (2 HSPs)
chr5 (292-344)||(26600075-26600127)
chr5 (290-354)||(18264472-18264537)


Alignment Details
Target: chr6 (Bit Score: 287; Significance: 1e-161; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 17 - 387
Target Start/End: Original strand, 5358335 - 5358704
Alignment:
Q  17 gatgtgaagtgaatgatgcacgagtgtcctctcctctgaaactcaagaacacatcatggatccttgtgccggtttctcttgaatcttcatcacccaaaat 116  Q
    |||||||||||||  | ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  5358335 gatgtgaagtgaagcaagcatgagtgtcctctcctctgaaactcaagaacacatcatggatccttgtgccggtttttcttgaatcttcatcacccaaaat 5358434  T
Q  117 taattgggcatgttgggaggagttaccggaagaaaccatggatggatgagacgagtgaaagagaataaactaactatttgttgaatcagaaaactatgag 216  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  5358435 taattgggcatgttgggaggagtcaccggaagaaaccatggatggatgagacgagtgaaagagaataatctaactatttgttgaatcagaaaactatgag 5358534  T
Q  217 agagtgaagtgaatataagtgtgcagattcaacaaagaaagaaataatgagccaatctagttaaattgctcaatagagaaatacttacttggtctcaaga 316  Q
    |||||||||||||  |||||||||| ||||||||||||||||||||| |||| |||||||||||||||||||| ||||||||| ||| |||||| |||||    
T  5358535 agagtgaagtgaagttaagtgtgca-attcaacaaagaaagaaataaagagctaatctagttaaattgctcaagagagaaatatttatttggtcacaaga 5358633  T
Q  317 ccaaatgtatagtgtttaggcatacacacaatcatgcacttatccctaaaatattttattattagaaaata 387  Q
     |||||||||| |||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||    
T  5358634 tcaaatgtataatgtttaggcatacacacaatcatgcacttatccccaaaatatttgattattagaaaata 5358704  T

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Target: chr6; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 17 - 83
Target Start/End: Complemental strand, 5422106 - 5422040
Alignment:
Q  17 gatgtgaagtgaatgatgcacgagtgtcctctcctctgaaactcaagaacacatcatggatccttgt 83  Q
    ||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||    
T  5422106 gatgtgaagtgaatgatgcacgagtatcctctcctctaaaacttaagaacacatcatggatccttgt 5422040  T

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Target: chr6; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 379 - 433
Target Start/End: Original strand, 5358900 - 5358954
Alignment:
Q  379 tagaaaatatgtctttgtatgtgtgtctaaatactacacatttggttgtgtgacg 433  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  5358900 tagaaaatatgtctttatatgtgtgtctaaatactacacatttggttgtgtgacg 5358954  T

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Target: chr6; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 5070618 - 5070683
Alignment:
Q  17 gatgtgaagtgaatgatgcacgagtgtcctctcctctgaaactcaagaacacatcatggatccttg 82  Q
    |||||||||||||||| |  ||||||||||||||||||||||| ||||||||||||||||||||||    
T  5070618 gatgtgaagtgaatgaagagcgagtgtcctctcctctgaaacttaagaacacatcatggatccttg 5070683  T

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Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 17 - 73
Target Start/End: Original strand, 5077284 - 5077340
Alignment:
Q  17 gatgtgaagtgaatgatgcacgagtgtcctctcctctgaaactcaagaacacatcat 73  Q
    ||||||||||||| ||| ||||||||||| ||||||||||||| |||||||||||||    
T  5077284 gatgtgaagtgaaagattcacgagtgtccactcctctgaaacttaagaacacatcat 5077340  T

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Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 17 - 81
Target Start/End: Complemental strand, 5394247 - 5394183
Alignment:
Q  17 gatgtgaagtgaatgatgcacgagtgtcctctcctctgaaactcaagaacacatcatggatcctt 81  Q
    |||||||||||||||| | |||||||||||| ||||||||||| |||||||| || || ||||||    
T  5394247 gatgtgaagtgaatgaagaacgagtgtcctcccctctgaaacttaagaacacgtcgtgaatcctt 5394183  T

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Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 17 - 90
Target Start/End: Original strand, 5107981 - 5108054
Alignment:
Q  17 gatgtgaagtgaatgatgcacgagtgtcctctcctctgaaactcaagaacacatcatggatccttgtgccggtt 90  Q
    ||||||||||||| || |||||||| || |  ||||||||||| | |||||| ||||||||||||||| |||||    
T  5107981 gatgtgaagtgaaggaagcacgagtatctttgcctctgaaacttaggaacacgtcatggatccttgtgtcggtt 5108054  T

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Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 5092841 - 5092785
Alignment:
Q  17 gatgtgaagtgaatgatgcacgagtgtcctctcctctgaaactcaagaacacatcat 73  Q
    ||||||||||||||||||||||||| || | |||||| ||||| |||||||| ||||    
T  5092841 gatgtgaagtgaatgatgcacgagtatcttttcctctaaaacttaagaacacttcat 5092785  T

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Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 17 - 73
Target Start/End: Original strand, 5160699 - 5160755
Alignment:
Q  17 gatgtgaagtgaatgatgcacgagtgtcctctcctctgaaactcaagaacacatcat 73  Q
    ||||||||||||||||||||||||| || | |||||| ||||| |||||||| ||||    
T  5160699 gatgtgaagtgaatgatgcacgagtatcttttcctctaaaacttaagaacacttcat 5160755  T

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Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 5272913 - 5272848
Alignment:
Q  17 gatgtgaagtgaatgatgcacgagtgtcctctcctctgaaactcaagaacacatcatggatccttg 82  Q
    |||||||||||||||| |  || |||||||| ||||||||||| |||||||| |||| | ||||||    
T  5272913 gatgtgaagtgaatgaagtgcgcgtgtcctcgcctctgaaacttaagaacacttcatagctccttg 5272848  T

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Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 74
Target Start/End: Complemental strand, 5340457 - 5340400
Alignment:
Q  17 gatgtgaagtgaatgatgcacgagtgtcctctcctctgaaactcaagaacacatcatg 74  Q
    ||||||||||||| ||| ||||||||||||  ||||| |||||||| ||||| |||||    
T  5340457 gatgtgaagtgaaggatacacgagtgtccttccctctaaaactcaaaaacacttcatg 5340400  T

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Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 90
Target Start/End: Complemental strand, 5429502 - 5429429
Alignment:
Q  17 gatgtgaagtgaatgatgcacgagtgtcctctcctctgaaactcaagaacacatcatggatccttgtgccggtt 90  Q
    ||||||||||||| ||| | ||||| || || ||||| ||||| | |||||| ||||||||||||||| |||||    
T  5429502 gatgtgaagtgaacgatcctcgagtatcttcgcctctaaaacttaggaacacgtcatggatccttgtgtcggtt 5429429  T

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Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 5444007 - 5443942
Alignment:
Q  17 gatgtgaagtgaatgatgcacgagtgtcctctcctctgaaactcaagaacacatcatggatccttg 82  Q
    ||||||||||||| || |||||||| || |  ||||| ||||| |||||||| |||||||||||||    
T  5444007 gatgtgaagtgaaggaagcacgagtatctttccctctaaaacttaagaacacgtcatggatccttg 5443942  T

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Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 81
Target Start/End: Original strand, 5185057 - 5185121
Alignment:
Q  17 gatgtgaagtgaatgatgcacgagtgtcctctcctctgaaactcaagaacacatcatggatcctt 81  Q
    |||||||||| || || | |||||| || || ||||| ||||| |||||||||||||||||||||    
T  5185057 gatgtgaagtaaaggaagaacgagtatcttcccctctaaaacttaagaacacatcatggatcctt 5185121  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 292 - 368
Target Start/End: Original strand, 12283696 - 12283772
Alignment:
Q  292 gagaaatacttacttggtctcaagaccaaatgtatagtgtttaggcatacacacaatcatgcacttatccctaaaat 368  Q
    ||||||||||||||||||| |||||||||||||||||  |||||||  ||| ||||| |||||||| || |||||||    
T  12283696 gagaaatacttacttggtcacaagaccaaatgtatagaatttaggcgcacatacaatgatgcacttgtctctaaaat 12283772  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 292 - 348
Target Start/End: Complemental strand, 24213854 - 24213796
Alignment:
Q  292 gagaaatacttacttggtct--caagaccaaatgtatagtgtttaggcatacacacaat 348  Q
    ||||||| ||||||||||||  |||||||||||| ||||||||||| || |||||||||    
T  24213854 gagaaatgcttacttggtcttacaagaccaaatgcatagtgtttagacacacacacaat 24213796  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 17 - 71
Target Start/End: Complemental strand, 4332549 - 4332495
Alignment:
Q  17 gatgtgaagtgaatgatgcacgagtgtcctctcctctgaaactcaagaacacatc 71  Q
    ||||||||||||||||||| |||||||| || ||||| |||||||||||||||||    
T  4332549 gatgtgaagtgaatgatgcgcgagtgtcttcgcctctaaaactcaagaacacatc 4332495  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 71
Target Start/End: Complemental strand, 4356652 - 4356598
Alignment:
Q  17 gatgtgaagtgaatgatgcacgagtgtcctctcctctgaaactcaagaacacatc 71  Q
    ||||||||||||||||||| | |||||| |||||||| |||||||| ||||||||    
T  4356652 gatgtgaagtgaatgatgctctagtgtcttctcctctaaaactcaaaaacacatc 4356598  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 71
Target Start/End: Complemental strand, 6749871 - 6749817
Alignment:
Q  17 gatgtgaagtgaatgatgcacgagtgtcctctcctctgaaactcaagaacacatc 71  Q
    |||||||| |||||  ||||||| |||| ||||||||||||||||||||||||||    
T  6749871 gatgtgaaatgaattttgcacgactgtcgtctcctctgaaactcaagaacacatc 6749817  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 41 - 73
Target Start/End: Original strand, 6592337 - 6592369
Alignment:
Q  41 tgtcctctcctctgaaactcaagaacacatcat 73  Q
    |||| ||||||||||||||||||||||||||||    
T  6592337 tgtcttctcctctgaaactcaagaacacatcat 6592369  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 295 - 348
Target Start/End: Original strand, 545778 - 545831
Alignment:
Q  295 aaatacttacttggtctcaagaccaaatgtatagtgtttaggcatacacacaat 348  Q
    ||||||||| |||||| |||||||||||||| ||||||||||| ||||||||||    
T  545778 aaatacttatttggtcacaagaccaaatgtacagtgtttaggcgtacacacaat 545831  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 17 - 81
Target Start/End: Original strand, 34719964 - 34720028
Alignment:
Q  17 gatgtgaagtgaatgatgcacgagtgtcctctcctctgaaactcaagaacacatcatggatcctt 81  Q
    |||||||| |||||  ||||||||| || || ||||||||||||||||||||||||| |||||||    
T  34719964 gatgtgaaatgaatcttgcacgagtatcttcccctctgaaactcaagaacacatcatagatcctt 34720028  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 301 - 368
Target Start/End: Complemental strand, 6833599 - 6833532
Alignment:
Q  301 ttacttggtctcaagaccaaatgtatagtgtttaggcatacacacaatcatgcacttatccctaaaat 368  Q
    |||||||||  |||||||||||  ||| |||||||||||||||||||| |||||||| |||| |||||    
T  6833599 ttacttggttacaagaccaaatacataatgtttaggcatacacacaatgatgcacttgtccccaaaat 6833532  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 295 - 344
Target Start/End: Complemental strand, 26317944 - 26317895
Alignment:
Q  295 aaatacttacttggtctcaagaccaaatgtatagtgtttaggcatacaca 344  Q
    |||||||||||||||| ||||||| |||| |||||||||||||| |||||    
T  26317944 aaatacttacttggtcacaagaccgaatgcatagtgtttaggcacacaca 26317895  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 347
Target Start/End: Original strand, 26317789 - 26317830
Alignment:
Q  306 tggtctcaagaccaaatgtatagtgtttaggcatacacacaa 347  Q
    ||||| ||||||||||||||||||||||||||| ||| ||||    
T  26317789 tggtcacaagaccaaatgtatagtgtttaggcacacatacaa 26317830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 370 - 424
Target Start/End: Complemental strand, 26317855 - 26317799
Alignment:
Q  370 ttttattattagaaaa--tatgtctttgtatgtgtgtctaaatactacacatttggt 424  Q
    ||||||||||||||||  ||| |||||||||||||| ||||| |||| |||||||||    
T  26317855 ttttattattagaaaaaatatatctttgtatgtgtgcctaaacactatacatttggt 26317799  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 292 - 329
Target Start/End: Complemental strand, 26447692 - 26447655
Alignment:
Q  292 gagaaatacttacttggtctcaagaccaaatgtatagt 329  Q
    ||||||||||||||||||| |||||||||||| |||||    
T  26447692 gagaaatacttacttggtcacaagaccaaatgcatagt 26447655  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 291 - 368
Target Start/End: Complemental strand, 43572360 - 43572283
Alignment:
Q  291 agagaaatacttacttggtctcaagaccaaatgtatagtgtttaggcatacacacaatcatgcacttatccctaaaat 368  Q
    |||||| ||||||||||||| || |||||||||||||||| ||||||| | ||| ||| | |||||| |||| |||||    
T  43572360 agagaactacttacttggtcacaggaccaaatgtatagtgcttaggcacaaacataatgaggcacttgtccccaaaat 43572283  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 370 - 424
Target Start/End: Complemental strand, 43572265 - 43572209
Alignment:
Q  370 ttttattattagaaaatatgtct--ttgtatgtgtgtctaaatactacacatttggt 424  Q
    |||||||||||||||||||||||  ||||||||||| ||||| |||| |||| ||||    
T  43572265 ttttattattagaaaatatgtctgcttgtatgtgtgcctaaacactatacatatggt 43572209  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 292 - 357
Target Start/End: Complemental strand, 8010128 - 8010063
Alignment:
Q  292 gagaaatacttacttggtctcaagaccaaatgtatagtgtttaggcatacacacaatcatgcactt 357  Q
    |||||||||||| |||||| |||||| ||||| |||||||||||||| ||| ||||| ||| ||||    
T  8010128 gagaaatacttatttggtcacaagactaaatgcatagtgtttaggcacacatacaatgatgaactt 8010063  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 292 - 348
Target Start/End: Original strand, 19316023 - 19316079
Alignment:
Q  292 gagaaatacttacttggtctcaagaccaaatgtatagtgtttaggcatacacacaat 348  Q
    |||||||||||| |||||| | |||||||||| || |||||||| ||||||||||||    
T  19316023 gagaaatacttaattggtcacgagaccaaatgcatggtgtttagacatacacacaat 19316079  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 292 - 344
Target Start/End: Complemental strand, 26600127 - 26600075
Alignment:
Q  292 gagaaatacttacttggtctcaagaccaaatgtatagtgtttaggcatacaca 344  Q
    |||||||| |||||||||| |||||||||||| ||||||||||| || |||||    
T  26600127 gagaaatatttacttggtcacaagaccaaatgcatagtgtttagacacacaca 26600075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 354
Target Start/End: Original strand, 18264472 - 18264537
Alignment:
Q  290 tagagaaatacttac-ttggtctcaagaccaaatgtatagtgtttaggcatacacacaatcatgca 354  Q
    ||||||||||||||| ||| |  ||||| |||||||||| |||||||||| |||||| ||||||||    
T  18264472 tagagaaatacttactttgattacaagatcaaatgtataatgtttaggcacacacactatcatgca 18264537  T

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