View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1946_low_31 (Length: 450)

Name: NF1946_low_31
Description: NF1946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1946_low_31
NF1946_low_31
[»] chr2 (16 HSPs)
chr2 (198-400)||(13698532-13698734)
chr2 (15-198)||(13699066-13699249)
chr2 (101-198)||(25504689-25504786)
chr2 (105-186)||(43816249-43816330)
chr2 (104-199)||(2063078-2063172)
chr2 (121-199)||(22884915-22884991)
chr2 (120-199)||(27879913-27879994)
chr2 (104-151)||(20572294-20572341)
chr2 (108-185)||(4472132-4472210)
chr2 (120-195)||(15126192-15126268)
chr2 (120-199)||(24308515-24308595)
chr2 (166-199)||(15360985-15361018)
chr2 (120-199)||(33788411-33788490)
chr2 (149-199)||(7696231-7696281)
chr2 (127-198)||(4974990-4975063)
chr2 (127-198)||(4992898-4992971)
[»] chr5 (11 HSPs)
chr5 (101-199)||(39183965-39184063)
chr5 (101-198)||(8731121-8731218)
chr5 (120-198)||(17853834-17853912)
chr5 (128-199)||(24072047-24072117)
chr5 (156-199)||(7682830-7682873)
chr5 (159-198)||(8297751-8297790)
chr5 (166-197)||(22675101-22675132)
chr5 (126-199)||(33109959-33110034)
chr5 (149-199)||(30097602-30097652)
chr5 (149-197)||(4914264-4914312)
chr5 (159-199)||(7195062-7195102)
[»] chr7 (9 HSPs)
chr7 (101-199)||(22567891-22567989)
chr7 (134-199)||(28534290-28534355)
chr7 (122-199)||(23983446-23983524)
chr7 (120-199)||(9427881-9427961)
chr7 (120-188)||(36449315-36449383)
chr7 (105-186)||(11378923-11379004)
chr7 (166-199)||(48058444-48058477)
chr7 (164-199)||(9107411-9107446)
chr7 (135-199)||(31409762-31409826)
[»] chr4 (6 HSPs)
chr4 (101-199)||(12296378-12296478)
chr4 (97-195)||(46487470-46487570)
chr4 (120-185)||(20632261-20632326)
chr4 (105-186)||(46698582-46698662)
chr4 (104-199)||(28967073-28967169)
chr4 (165-199)||(43373868-43373902)
[»] chr1 (10 HSPs)
chr1 (120-200)||(38548837-38548917)
chr1 (101-199)||(17033791-17033889)
chr1 (120-192)||(38544524-38544596)
chr1 (119-199)||(42374385-42374465)
chr1 (105-199)||(46603588-46603681)
chr1 (120-199)||(16577498-16577579)
chr1 (120-192)||(49820356-49820427)
chr1 (132-199)||(37200354-37200421)
chr1 (123-199)||(40934093-40934166)
chr1 (138-199)||(26602610-26602671)
[»] scaffold1613 (1 HSPs)
scaffold1613 (120-192)||(803-875)
[»] chr6 (6 HSPs)
chr6 (101-199)||(33968398-33968493)
chr6 (136-199)||(17278263-17278326)
chr6 (120-199)||(32935104-32935184)
chr6 (166-199)||(13098349-13098382)
chr6 (164-199)||(16180677-16180712)
chr6 (159-199)||(15120364-15120404)
[»] chr3 (12 HSPs)
chr3 (120-196)||(823201-823277)
chr3 (101-199)||(25594310-25594409)
chr3 (123-199)||(27399189-27399264)
chr3 (120-199)||(45354709-45354789)
chr3 (164-197)||(12086526-12086559)
chr3 (135-190)||(32010016-32010072)
chr3 (126-197)||(14194177-14194248)
chr3 (120-199)||(40689518-40689597)
chr3 (165-199)||(1652652-1652686)
chr3 (125-193)||(13018094-13018162)
chr3 (126-178)||(25647930-25647982)
chr3 (165-201)||(30935151-30935187)
[»] chr8 (4 HSPs)
chr8 (129-199)||(25184921-25184990)
chr8 (127-199)||(10248328-10248402)
chr8 (165-199)||(30235893-30235927)
chr8 (120-181)||(15906910-15906971)
[»] scaffold0499 (1 HSPs)
scaffold0499 (166-199)||(6828-6861)
[»] scaffold0050 (1 HSPs)
scaffold0050 (126-197)||(36952-37024)


Alignment Details
Target: chr2 (Bit Score: 175; Significance: 5e-94; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 198 - 400
Target Start/End: Complemental strand, 13698734 - 13698532
Alignment:
Q  198 tgctaataaattatgaaccaaagaatctttgaaagtcaatatatgtcacattgattttggttatctaaccatagatttatattcaatgtttatataatga 297  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||    
T  13698734 tgctaataaattatgaaccaaagaatctttgaaagtcaatatatgtcacattgattttgattatctaaccagagatttatattcaatgtttatataatga 13698635  T
Q  298 aaaattgaaggtgaggtgatcatgctcaaatttaaggtaaggaagaccttaaaactcatatttgacatttacatctctctaaaaatattaatcgagacaa 397  Q
    |||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||  |||||||||||||||||||||    
T  13698634 aaaattgaagatgaggcgatcatgctcaaatttaaggtaaggaagaccttaaaactcatatttgacatttacagctcattaaaaatattaatcgagacaa 13698535  T
Q  398 tat 400  Q
    |||    
T  13698534 tat 13698532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 15 - 198
Target Start/End: Complemental strand, 13699249 - 13699066
Alignment:
Q  15 caaaagatagcaacttaaccttgtcttaatannnnnnnngggtacaacttgatataaactttcacttgtatatgttgtatagtttaggatgagtagtggc 114  Q
    ||||||||||||||||||| |||||||||||        |||||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||    
T  13699249 caaaagatagcaacttaacattgtcttaatagtttttttgggtacaacttgatataaactttcacttgtatatgtcgtatattttgggatgagtagtggc 13699150  T
Q  115 gttgttggttatggatatcgtttttcagtggtcgtttcgtaaaagagtgtgttttaggtggtgatgtttattttggtgggtgtt 198  Q
    |||| |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13699149 gttgctggttatgtataccgtttttcagtggtcgtttcgtaaaagagtgtgttttaggtggtgatgtttattttggtgggtgtt 13699066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 101 - 198
Target Start/End: Complemental strand, 25504786 - 25504689
Alignment:
Q  101 ggatgagtagtggcgttgttggttatggatatcgtttttcagtggtcgtttcgtaaaagagtgtgttttaggtggtgatgtttattttggtgggtgtt 198  Q
    |||||||||||||| || ||| |||| |||| |||||||||||||||||||||| ||||| | |||||||||||||||||||||||||||||||||||    
T  25504786 ggatgagtagtggcttttttgtttattgataccgtttttcagtggtcgtttcgtgaaagactctgttttaggtggtgatgtttattttggtgggtgtt 25504689  T

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Target: chr2; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 105 - 186
Target Start/End: Complemental strand, 43816330 - 43816249
Alignment:
Q  105 gagtagtggcgttgttggttatggatatcgtttttcagtggtcgtttcgtaaaagagtgtgttttaggtggtgatgtttatt 186  Q
    ||||||||||| || ||  |||||||| |||||||||||||| ||||||| ||||||| | |||||||||||||||||||||    
T  43816330 gagtagtggcgatgctgtgtatggataccgtttttcagtggttgtttcgtgaaagagtctattttaggtggtgatgtttatt 43816249  T

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Target: chr2; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 104 - 199
Target Start/End: Original strand, 2063078 - 2063172
Alignment:
Q  104 tgagtagtggcgttgt-tggttatggatatcgttttt-cagtggtcgtttcgtaaaagagtgtgttttaggtggtgatgtttattttggtgggtgttg 199  Q
    |||||||||||  ||| |||||||||||||||||||| ||||||||||||| | || ||||   ||||||||||||||||||||||||| ||||||||    
T  2063078 tgagtagtggcaatgtatggttatggatatcgttttttcagtggtcgtttcttgaaggagt---ttttaggtggtgatgtttattttggcgggtgttg 2063172  T

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Target: chr2; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 121 - 199
Target Start/End: Complemental strand, 22884991 - 22884915
Alignment:
Q  121 ggttatggatatcgtttttcagtggtcgtttcgtaaaagagtgtgttttaggtggtgatgtttattttggtgggtgttg 199  Q
    |||||||||| |||||| |||||||||||||||| || |||| |||||||||||||||||||  |||| ||||||||||    
T  22884991 ggttatggatttcgtttgtcagtggtcgtttcgtgaaggagtctgttttaggtggtgatgtt--ttttagtgggtgttg 22884915  T

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Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 120 - 199
Target Start/End: Complemental strand, 27879994 - 27879913
Alignment:
Q  120 tggttatggatatcgtttttcagtggtcgttt-cgtaaaagagtgtgttttaggtggtgatgttta-ttttggtgggtgttg 199  Q
    ||||||||||| ||||||||||| |||||||| | | || |||| ||||||||||||||||||||| |||||||||||||||    
T  27879994 tggttatggatttcgtttttcagaggtcgttttcctgaaggagtctgttttaggtggtgatgtttatttttggtgggtgttg 27879913  T

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Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 104 - 151
Target Start/End: Original strand, 20572294 - 20572341
Alignment:
Q  104 tgagtagtggcgttgttggttatggatatcgtttttcagtggtcgttt 151  Q
    |||||||||||| || ||||||||||||||||||||||||||||||||    
T  20572294 tgagtagtggcgatggtggttatggatatcgtttttcagtggtcgttt 20572341  T

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Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 108 - 185
Target Start/End: Original strand, 4472132 - 4472210
Alignment:
Q  108 tagtggcg-ttgttggttatggatatcgtttttcagtggtcgtttcgtaaaagagtgtgttttaggtggtgatgtttat 185  Q
    |||||||| ||| |||||||||||| ||||||||||||||| |||| |||| || | | ||||||||||||||||||||    
T  4472132 tagtggcgattggtggttatggataacgtttttcagtggtcatttcttaaaggactctattttaggtggtgatgtttat 4472210  T

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Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 120 - 195
Target Start/End: Complemental strand, 15126268 - 15126192
Alignment:
Q  120 tggttatggatatcgtttttcagtggtcgtttcgtaaaagagtgtgtttt-aggtggtgatgtttattttggtgggt 195  Q
    ||||||||||| | |||||| || ||| ||||||| || |||| |||||| ||||||||||||||||||||||||||    
T  15126268 tggttatggattttgttttttaggggtggtttcgtgaacgagtttgtttttaggtggtgatgtttattttggtgggt 15126192  T

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Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 120 - 199
Target Start/End: Complemental strand, 24308595 - 24308515
Alignment:
Q  120 tggttatggatatcgtttttcag-tggtcgtttcgtaaaagagtgtgttttaggtggtgatgtttattttggtgggtgttg 199  Q
    |||||||| |||||||||||  | |||| ||||| | ||||| | ||||||||||| ||||||||||||||||||||||||    
T  24308595 tggttatgtatatcgtttttttggtggttgtttcatgaaagaatttgttttaggtgatgatgtttattttggtgggtgttg 24308515  T

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Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 166 - 199
Target Start/End: Original strand, 15360985 - 15361018
Alignment:
Q  166 ttttaggtggtgatgtttattttggtgggtgttg 199  Q
    ||||||||||||||||||||||||||||||||||    
T  15360985 ttttaggtggtgatgtttattttggtgggtgttg 15361018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 120 - 199
Target Start/End: Complemental strand, 33788490 - 33788411
Alignment:
Q  120 tggttatggatatcgtttttcagtggtcgtttcgtaaaagagtgtgttttaggtggtgatgtttattttggtgggtgttg 199  Q
    ||||||||||| | |||| |||||||| |||||||  | |||  ||||||||||||  ||||||||||| ||||||||||    
T  33788490 tggttatggattttgtttgtcagtggttgtttcgtggaggagcctgttttaggtggcaatgtttattttagtgggtgttg 33788411  T

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Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 149 - 199
Target Start/End: Original strand, 7696231 - 7696281
Alignment:
Q  149 tttcgtaaaagagtgtgttttaggtggtgatgtttattttggtgggtgttg 199  Q
    |||||| || |||| | |||||||||||||||| |||||||||||||||||    
T  7696231 tttcgtgaaggagtttattttaggtggtgatgtgtattttggtgggtgttg 7696281  T

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Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 127 - 198
Target Start/End: Original strand, 4974990 - 4975063
Alignment:
Q  127 ggatatcgttttt-cagtggtcgttt-cgtaaaagagtgtgttttaggtggtgatgtttattttggtgggtgtt 198  Q
    ||||||||||||| |||||||||||| ||| ||  ||| |||||||||||||| ||| || |||||||||||||    
T  4974990 ggatatcgtttttacagtggtcgttttcgtgaagaagtctgttttaggtggtggtgtgtaatttggtgggtgtt 4975063  T

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Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 127 - 198
Target Start/End: Original strand, 4992898 - 4992971
Alignment:
Q  127 ggatatcgttttt-cagtggtcgttt-cgtaaaagagtgtgttttaggtggtgatgtttattttggtgggtgtt 198  Q
    ||||||||||||| |||||||||||| ||| ||  ||| |||||||||||||| ||| || |||||||||||||    
T  4992898 ggatatcgtttttacagtggtcgttttcgtgaagaagtctgttttaggtggtggtgtgtaatttggtgggtgtt 4992971  T

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Target: chr5 (Bit Score: 67; Significance: 1e-29; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 101 - 199
Target Start/End: Complemental strand, 39184063 - 39183965
Alignment:
Q  101 ggatgagtagtggcgttgttggttatggatatcgtttttcagtggtcgtttcgtaaaagagtgtgttttaggtggtgatgtttattttggtgggtgttg 199  Q
    |||| |||||||||| ||||||||||||||| |||||||||||||||||||||| | ||||| |||||||||||||||| |||||||| ||||||||||    
T  39184063 ggataagtagtggcgatgttggttatggataccgtttttcagtggtcgtttcgtgatagagtctgttttaggtggtgatctttattttagtgggtgttg 39183965  T

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Target: chr5; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 101 - 198
Target Start/End: Original strand, 8731121 - 8731218
Alignment:
Q  101 ggatgagtagtggcgttgttggttatggatatcgtttttcagtggtcgtttcgtaaaagagtgtgttttaggtggtgatgtttattttggtgggtgtt 198  Q
    |||||||||||||| || ||| |||| |||| |||||||||||||||||||||| ||||| | |||||||||||||||||||||||||||||||||||    
T  8731121 ggatgagtagtggcttttttgtttattgataccgtttttcagtggtcgtttcgtgaaagactctgttttaggtggtgatgtttattttggtgggtgtt 8731218  T

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Target: chr5; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 120 - 198
Target Start/End: Complemental strand, 17853912 - 17853834
Alignment:
Q  120 tggttatggatatcgtttttcagtggtcgtttcgtaaaagagtgtgttttaggtggtgatgtttattttggtgggtgtt 198  Q
    ||||||||||||||||||||||||| |||||||||||| |||| ||||||||  |||||||||||||||||||||||||    
T  17853912 tggttatggatatcgtttttcagtgatcgtttcgtaaaggagtctgttttagaaggtgatgtttattttggtgggtgtt 17853834  T

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Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 128 - 199
Target Start/End: Complemental strand, 24072117 - 24072047
Alignment:
Q  128 gatatcgtttttcagtggtcgtttcgtaaaagagtgtgttttaggtggtgatgtttattttggtgggtgttg 199  Q
    |||||||||||| |||||||||||||| |  |||  ||||||| ||||||||||||||||||||||||||||    
T  24072117 gatatcgttttttagtggtcgtttcgtgag-gagactgttttatgtggtgatgtttattttggtgggtgttg 24072047  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 156 - 199
Target Start/End: Original strand, 7682830 - 7682873
Alignment:
Q  156 aaagagtgtgttttaggtggtgatgtttattttggtgggtgttg 199  Q
    ||||||| | |||||||||||||||| |||||||||||||||||    
T  7682830 aaagagtctattttaggtggtgatgtgtattttggtgggtgttg 7682873  T

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Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 159 - 198
Target Start/End: Original strand, 8297751 - 8297790
Alignment:
Q  159 gagtgtgttttaggtggtgatgtttattttggtgggtgtt 198  Q
    ||||||||||||||||||||||| ||||||||||| ||||    
T  8297751 gagtgtgttttaggtggtgatgtgtattttggtggatgtt 8297790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 166 - 197
Target Start/End: Complemental strand, 22675132 - 22675101
Alignment:
Q  166 ttttaggtggtgatgtttattttggtgggtgt 197  Q
    ||||||||||||||||||||||||||||||||    
T  22675132 ttttaggtggtgatgtttattttggtgggtgt 22675101  T

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Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 126 - 199
Target Start/End: Complemental strand, 33110034 - 33109959
Alignment:
Q  126 tggatatcgttttt-cagtggtcgttt-cgtaaaagagtgtgttttaggtggtgatgtttattttggtgggtgttg 199  Q
    |||||||||||||| |||||||||||| ||| || | || ||||||||||| ||| || |||||||||||||||||    
T  33110034 tggatatcgtttttacagtggtcgttttcgtgaaggggtttgttttaggtgatgacgtgtattttggtgggtgttg 33109959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 149 - 199
Target Start/End: Original strand, 30097602 - 30097652
Alignment:
Q  149 tttcgtaaaagagtgtgttttaggtggtgatgtttattttggtgggtgttg 199  Q
    |||||| || |||| ||||||||||||||| || |||||||||||||||||    
T  30097602 tttcgtgaaggagtctgttttaggtggtgacgtgtattttggtgggtgttg 30097652  T

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Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 149 - 197
Target Start/End: Complemental strand, 4914312 - 4914264
Alignment:
Q  149 tttcgtaaaagagtgtgttttaggtggtgatgtttattttggtgggtgt 197  Q
    |||||| ||||||| || |||||||||||| || |||||||||||||||    
T  4914312 tttcgtgaaagagtctgatttaggtggtgaagtgtattttggtgggtgt 4914264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 159 - 199
Target Start/End: Complemental strand, 7195102 - 7195062
Alignment:
Q  159 gagtgtgttttaggtggtgatgtttattttggtgggtgttg 199  Q
    |||| ||||||||||||||| || |||||||||||||||||    
T  7195102 gagtctgttttaggtggtgacgtgtattttggtgggtgttg 7195062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 3e-27; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 101 - 199
Target Start/End: Complemental strand, 22567989 - 22567891
Alignment:
Q  101 ggatgagtagtggcgttgttggttatggatatcgtttttcagtggtcgtttcgtaaaagagtgtgttttaggtggtgatgtttattttggtgggtgttg 199  Q
    ||||||||||||| | || |||||||||||| |||||||||||||| ||||||| ||||||| |||||||||||||||||| ||||||||||| |||||    
T  22567989 ggatgagtagtggtgatgctggttatggataccgtttttcagtggttgtttcgtgaaagagtctgttttaggtggtgatgtgtattttggtggatgttg 22567891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 134 - 199
Target Start/End: Complemental strand, 28534355 - 28534290
Alignment:
Q  134 gtttttcagtggtcgtttcgtaaaagagtgtgttttaggtggtgatgtttattttggtgggtgttg 199  Q
    ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||    
T  28534355 gtttttcagtggtcgtttcgtgaaagagtctgttttaggtggtgatgtttattttggtgggtgttg 28534290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 122 - 199
Target Start/End: Original strand, 23983446 - 23983524
Alignment:
Q  122 gttatggatatcgtttttcagtggtcgttt-cgtaaaagagtgtgttttaggtggtgatgtttattttggtgggtgttg 199  Q
    |||||| |||||||||||||||||| |||| ||| || |||| |||||||||||||| |||||||||||||||||||||    
T  23983446 gttatgtatatcgtttttcagtggttgttttcgtgaatgagtctgttttaggtggtggtgtttattttggtgggtgttg 23983524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 120 - 199
Target Start/End: Complemental strand, 9427961 - 9427881
Alignment:
Q  120 tggttatggatatcgtttttcagtggtcgt-ttcgtaaaagagtgtgttttaggtggtgatgtttattttggtgggtgttg 199  Q
    |||||||||||||| ||||| |||||| || ||||| ||||| | |||||||||| ||||||||||||||||| |||||||    
T  9427961 tggttatggatatcattttttagtggttgtcttcgtgaaagaatttgttttaggtagtgatgtttattttggtaggtgttg 9427881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 120 - 188
Target Start/End: Original strand, 36449315 - 36449383
Alignment:
Q  120 tggttatggatatcgtttttcagtggtcgtttcgtaaaagagtgtgttttaggtggtgatgtttatttt 188  Q
    ||||||||||||||||||||||| ||| ||||||| ||  ||| | |||||||||||||||||||||||    
T  36449315 tggttatggatatcgtttttcagcggttgtttcgtgaagtagtctattttaggtggtgatgtttatttt 36449383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 105 - 186
Target Start/End: Complemental strand, 11379004 - 11378923
Alignment:
Q  105 gagtagtggcgttgttggttatggatatcgtttttcagtggtcgtttcgtaaaagagtgtgttttaggtggtgatgtttatt 186  Q
    ||||||||||| |  ||||| ||||||  ||||||||||||| ||||| | || || | |||||||||||||||||||||||    
T  11379004 gagtagtggcgatactggttttggatactgtttttcagtggttgtttcttgaaggaatctgttttaggtggtgatgtttatt 11378923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 166 - 199
Target Start/End: Complemental strand, 48058477 - 48058444
Alignment:
Q  166 ttttaggtggtgatgtttattttggtgggtgttg 199  Q
    ||||||||||||||||||||||||||||||||||    
T  48058477 ttttaggtggtgatgtttattttggtgggtgttg 48058444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 164 - 199
Target Start/End: Original strand, 9107411 - 9107446
Alignment:
Q  164 tgttttaggtggtgatgtttattttggtgggtgttg 199  Q
    ||||||||||||||||| ||||||||||||||||||    
T  9107411 tgttttaggtggtgatgcttattttggtgggtgttg 9107446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 135 - 199
Target Start/End: Complemental strand, 31409826 - 31409762
Alignment:
Q  135 tttttcagtggtcgtttcgtaaaagagtgtgttttaggtggtgatgtttattttggtgggtgttg 199  Q
    ||||||| |||||||||  | || |||| ||||||| ||| ||||||||||||||| ||||||||    
T  31409826 tttttcaatggtcgttttttgaaggagtctgttttatgtgatgatgtttattttggagggtgttg 31409762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 5e-26; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 101 - 199
Target Start/End: Original strand, 12296378 - 12296478
Alignment:
Q  101 ggatgagtagtggcgttgt-tggttatggatatcgtttttcagtggtcgtttcgtaaaagagtgtg-ttttaggtggtgatgtttattttggtgggtgtt 198  Q
    ||||||||||||||| ||  ||||||||||||||||||||||||||||| |||| ||| |||| || |||||||||||||||||||||||||||||||||    
T  12296378 ggatgagtagtggcgatgggtggttatggatatcgtttttcagtggtcgcttcggaaaggagtctgtttttaggtggtgatgtttattttggtgggtgtt 12296477  T
Q  199 g 199  Q
    |    
T  12296478 g 12296478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 97 - 195
Target Start/End: Original strand, 46487470 - 46487570
Alignment:
Q  97 tttaggatgagtagtggcgttgt-tggttatggatatcgtttttcagtggtcgtttcgtaaaagagtgtg-ttttaggtggtgatgtttattttggtggg 194  Q
    ||||||||||||||||||| | | |||||||| |||||||||||||||||||| ||| | || |||| || ||||||| |||||||||||||||||||||    
T  46487470 tttaggatgagtagtggcgatatgtggttatgaatatcgtttttcagtggtcgcttcatgaaggagtctgtttttaggaggtgatgtttattttggtggg 46487569  T
Q  195 t 195  Q
    |    
T  46487570 t 46487570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 120 - 185
Target Start/End: Complemental strand, 20632326 - 20632261
Alignment:
Q  120 tggttatggatatcgtttttcagtggtcgtttcgtaaaagagtgtgttttaggtggtgatgtttat 185  Q
    ||||||||  ||||||| ||||||||| |||| || ||||||| ||||||||| ||||||||||||    
T  20632326 tggttatgtgtatcgttcttcagtggttgttttgtgaaagagtctgttttagggggtgatgtttat 20632261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 105 - 186
Target Start/End: Complemental strand, 46698662 - 46698582
Alignment:
Q  105 gagtagtggcgttgttggttatggatatcgtttttcagtggtcgtttcgtaaaagagtgtgttttaggtggtgatgtttatt 186  Q
    ||||||| ||| ||||||||||||||| |||||| ||||||| ||||| | || || | ||||||||||||| |||||||||    
T  46698662 gagtagtagcgatgttggttatggataccgtttt-cagtggttgtttcctgaaggaatctgttttaggtggtaatgtttatt 46698582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 104 - 199
Target Start/End: Original strand, 28967073 - 28967169
Alignment:
Q  104 tgagtagtggcgttgt-tggttatggatatcgtttttcagtggtcgtttcgtaaaagagtgtgttttaggtggtgatgtttattttggtgggtgttg 199  Q
    |||||||||||| ||  |||||||||||   |||||| |||||| ||||||| ||||  |   |||||||||| |||||||||||||||||||||||    
T  28967073 tgagtagtggcgatgagtggttatggattatgttttttagtggtggtttcgtgaaaggttcgtttttaggtggcgatgtttattttggtgggtgttg 28967169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 165 - 199
Target Start/End: Complemental strand, 43373902 - 43373868
Alignment:
Q  165 gttttaggtggtgatgtttattttggtgggtgttg 199  Q
    |||||||| ||||||||||||||||||||||||||    
T  43373902 gttttagggggtgatgtttattttggtgggtgttg 43373868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 5e-26; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 120 - 200
Target Start/End: Complemental strand, 38548917 - 38548837
Alignment:
Q  120 tggttatggatatcgtttttcagtggtcgtttcgtaaaagagtgtgttttaggtggtgatgtttattttggtgggtgttgc 200  Q
    |||||||| |||||||||||||||| ||||||||| ||||||| |||||||||||||||||||||||||||||| ||||||    
T  38548917 tggttatgaatatcgtttttcagtgatcgtttcgtgaaagagtctgttttaggtggtgatgtttattttggtggatgttgc 38548837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 101 - 199
Target Start/End: Original strand, 17033791 - 17033889
Alignment:
Q  101 ggatgagtagtggcgttgttggttatggatatcgtttttcagtggtcgtttcgtaaaagagtgtgttttaggtggtgatgtttattttggtgggtgttg 199  Q
    |||| |||||||| | || |||||||| ||| ||||||| |||||||||||||| ||||||| ||||||||||||| ||||||||||| |||| |||||    
T  17033791 ggattagtagtggtgatgctggttatgtataccgtttttaagtggtcgtttcgtgaaagagtatgttttaggtggtaatgtttattttcgtggatgttg 17033889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 120 - 192
Target Start/End: Complemental strand, 38544596 - 38544524
Alignment:
Q  120 tggttatggatatcgtttttcagtggtcgtttcgtaaaagagtgtgttttaggtggtgatgtttattttggtg 192  Q
    ||||||||||||||||||| ||||| || || ||| ||||||| |||||||||||||||||||||||||||||    
T  38544596 tggttatggatatcgttttccagtgatcattccgtgaaagagtctgttttaggtggtgatgtttattttggtg 38544524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 119 - 199
Target Start/End: Original strand, 42374385 - 42374465
Alignment:
Q  119 ttggttatggatatcgtttttcagtggtcgtttcgtaaaagagtgtgttttaggtggtgatgtttattttggtgggtgttg 199  Q
    |||||||||||||  ||||||||||||||||||||| || || | |||||||||||||||||||||| |||||||| ||||    
T  42374385 ttggttatggatacagtttttcagtggtcgtttcgtgaaggaatttgttttaggtggtgatgtttatcttggtgggggttg 42374465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 105 - 199
Target Start/End: Original strand, 46603588 - 46603681
Alignment:
Q  105 gagtagtggcgttgttggttatggatatcgtttttcagtggtcgtttcgtaaaagagtgtgttttaggtggtgatgtttattttggtgggtgttg 199  Q
    ||||||||||| ||||| ||||||||| ||| || ||||||||||||||| ||  ||| |||||||| ||||||| |||||||||||||||||||    
T  46603588 gagtagtggcgatgttgattatggataacgtgttccagtggtcgtttcgtgaagaagtctgttttagatggtgat-tttattttggtgggtgttg 46603681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 120 - 199
Target Start/End: Original strand, 16577498 - 16577579
Alignment:
Q  120 tggttatggatatcgtttttc-agtggtcgttt-cgtaaaagagtgtgttttaggtggtgatgtttattttggtgggtgttg 199  Q
    |||||||||||||| |||||  ||||||||||| ||| ||||||| ||||||||||| ||||||||||||||||||||||||    
T  16577498 tggttatggatatcattttttgagtggtcgttttcgtgaaagagtctgttttaggtgatgatgtttattttggtgggtgttg 16577579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 120 - 192
Target Start/End: Original strand, 49820356 - 49820427
Alignment:
Q  120 tggttatggatatcgtttttcagtggtcgtttcgtaaaagagtgtgttttaggtggtgatgtttattttggtg 192  Q
    ||||||||||||||||||||||||| ||||||| | || |||| | |||||||||||||||||||||||||||    
T  49820356 tggttatggatatcgtttttcagtgctcgtttcat-aaggagtcttttttaggtggtgatgtttattttggtg 49820427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 132 - 199
Target Start/End: Original strand, 37200354 - 37200421
Alignment:
Q  132 tcgtttttcagtggtcgtttcgtaaaagagtgtgttttaggtggtgatgtttattttggtgggtgttg 199  Q
    |||||| |||||||| |||||||  |||||  ||||||||||||||||||||||||| ||||||||||    
T  37200354 tcgtttgtcagtggttgtttcgtggaagagcttgttttaggtggtgatgtttattttagtgggtgttg 37200421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 123 - 199
Target Start/End: Original strand, 40934093 - 40934166
Alignment:
Q  123 ttatggatatcgtttttcagtggtcgtttcgtaaaagagtgtgttttaggtggtgatgtttattttggtgggtgttg 199  Q
    ||||||||||||||||||| || || |||||| || |||| | |||||   ||||||||||||||||||| ||||||    
T  40934093 ttatggatatcgtttttcaatgatcatttcgtgaaggagtctctttta---ggtgatgtttattttggtgtgtgttg 40934166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 138 - 199
Target Start/End: Complemental strand, 26602671 - 26602610
Alignment:
Q  138 ttcagtggtcgtttcgtaaaagagtgtgttttaggtggtgatgtttattttggtgggtgttg 199  Q
    ||||||||| |||| || || |||| ||| |||||||||||||||||||||  |||||||||    
T  26602671 ttcagtggttgttttgtgaatgagtctgtgttaggtggtgatgtttattttcatgggtgttg 26602610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1613 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: scaffold1613
Description:

Target: scaffold1613; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 120 - 192
Target Start/End: Complemental strand, 875 - 803
Alignment:
Q  120 tggttatggatatcgtttttcagtggtcgtttcgtaaaagagtgtgttttaggtggtgatgtttattttggtg 192  Q
    ||||||||||||||||||| ||||| || || ||| ||||||| |||||||||||||||||||||||||||||    
T  875 tggttatggatatcgttttccagtgatcattccgtgaaagagtctgttttaggtggtgatgtttattttggtg 803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 7e-19; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 101 - 199
Target Start/End: Complemental strand, 33968493 - 33968398
Alignment:
Q  101 ggatgagtagtggcgttgttggttatggatatcgtttttcagtggtcgtttcgtaaaagagtgtgttttaggtggtgatgtttattttggtgggtgttg 199  Q
    ||||||||||||  | || |||||||||||| | ||||||||||||||||| |||||||||| |||||||   |||||||| |||||||||||||||||    
T  33968493 ggatgagtagtgatgatgctggttatggataccatttttcagtggtcgttttgtaaaagagtctgtttta---ggtgatgtctattttggtgggtgttg 33968398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 136 - 199
Target Start/End: Complemental strand, 17278326 - 17278263
Alignment:
Q  136 ttttcagtggtcgtttcgtaaaagagtgtgttttaggtggtgatgtttattttggtgggtgttg 199  Q
    ||||||||| ||||||||| || |||| || |||||||||| ||||||||||||||||||||||    
T  17278326 ttttcagtgttcgtttcgtgaaggagtctgatttaggtggtaatgtttattttggtgggtgttg 17278263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 120 - 199
Target Start/End: Complemental strand, 32935184 - 32935104
Alignment:
Q  120 tggttatggatatcgtttttcagtggtcgttt-cgtaaaagagtgtgttttaggtggtgatgtttattttggtgggtgttg 199  Q
    |||||||| ||||||||||| || || ||||| ||| || |||| | |||||||||||| |||||||||||||||||||||    
T  32935184 tggttatgtatatcgtttttgagggggcgttttcgttaaggagtctattttaggtggtggtgtttattttggtgggtgttg 32935104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 166 - 199
Target Start/End: Complemental strand, 13098382 - 13098349
Alignment:
Q  166 ttttaggtggtgatgtttattttggtgggtgttg 199  Q
    ||||||||||||||||||||||||||||||||||    
T  13098382 ttttaggtggtgatgtttattttggtgggtgttg 13098349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 164 - 199
Target Start/End: Complemental strand, 16180712 - 16180677
Alignment:
Q  164 tgttttaggtggtgatgtttattttggtgggtgttg 199  Q
    |||||||||||||||||||||||||||||| |||||    
T  16180712 tgttttaggtggtgatgtttattttggtggatgttg 16180677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 159 - 199
Target Start/End: Complemental strand, 15120404 - 15120364
Alignment:
Q  159 gagtgtgttttaggtggtgatgtttattttggtgggtgttg 199  Q
    |||| |||||||||||||||||| ||||||||||| |||||    
T  15120404 gagtctgttttaggtggtgatgtgtattttggtggatgttg 15120364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 120 - 196
Target Start/End: Complemental strand, 823277 - 823201
Alignment:
Q  120 tggttatggatatcgtttttcagtggtcgtttcgtaaaagagtgtgttttaggtggtgatgtttattttggtgggtg 196  Q
    ||||||||||||||||||||||||||| |||| || |  |||| ||||||||||||||| ||| |||||||||||||    
T  823277 tggttatggatatcgtttttcagtggttgttttgtgatggagtttgttttaggtggtgaagttaattttggtgggtg 823201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 101 - 199
Target Start/End: Complemental strand, 25594409 - 25594310
Alignment:
Q  101 ggatgagtagtggcgttgt-tggttatggatatcgttttt-cagtggtcgtttcgtaaaagagtgtgttttaggtggtgatgtttattttggtgggtgtt 198  Q
    ||||||||||||||| ||  ||||| |||||||||||||| |||||||||||| || || |||| |||||||||| |||||||||||| |||||||||||    
T  25594409 ggatgagtagtggcgatgggtggtt-tggatatcgttttttcagtggtcgttttgtgaaggagtatgttttaggtagtgatgtttattgtggtgggtgtt 25594311  T

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Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 123 - 199
Target Start/End: Original strand, 27399189 - 27399264
Alignment:
Q  123 ttatggatatcgtttttcagtggtcgtttcgtaaaagagtgtgttttaggtggtgatgtttattttggtgggtgttg 199  Q
    |||| ||||||||||| ||||||||||| ||| || |||  ||||||||||| ||||||||||||||||||||||||    
T  27399189 ttatagatatcgtttt-cagtggtcgttgcgtgaaggagcctgttttaggtgatgatgtttattttggtgggtgttg 27399264  T

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Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 120 - 199
Target Start/End: Complemental strand, 45354789 - 45354709
Alignment:
Q  120 tggttatggatatcgtttttcagtggtcgtttcgtaaaagagtgtgttttaggtggtgat-gtttattttggtgggtgttg 199  Q
    |||||||||||||| |||||||||||||||||||| ||||| | | || |||||||||||  |||||||| ||||||||||    
T  45354789 tggttatggatatcctttttcagtggtcgtttcgtgaaagattatattctaggtggtgatattttatttttgtgggtgttg 45354709  T

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Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 164 - 197
Target Start/End: Original strand, 12086526 - 12086559
Alignment:
Q  164 tgttttaggtggtgatgtttattttggtgggtgt 197  Q
    ||||||||||||||||||||||||||||||||||    
T  12086526 tgttttaggtggtgatgtttattttggtgggtgt 12086559  T

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Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 135 - 190
Target Start/End: Original strand, 32010016 - 32010072
Alignment:
Q  135 tttttcagtggtcgttt-cgtaaaagagtgtgttttaggtggtgatgtttattttgg 190  Q
    |||||||| |||||||| ||| || |||| |||||||||||||||||||||||||||    
T  32010016 tttttcagaggtcgttttcgtgaaggagtctgttttaggtggtgatgtttattttgg 32010072  T

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Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 126 - 197
Target Start/End: Original strand, 14194177 - 14194248
Alignment:
Q  126 tggatatcgtttttcagtggtcgtttcgtaaaagagtgtgttttaggtggtgatgtttattttggtgggtgt 197  Q
    ||||||||||| ||||||||   |||||| |  |||| ||||||||||||||| || |||||||||||||||    
T  14194177 tggatatcgttattcagtggcgatttcgtgatggagtctgttttaggtggtgacgtgtattttggtgggtgt 14194248  T

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Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 120 - 199
Target Start/End: Complemental strand, 40689597 - 40689518
Alignment:
Q  120 tggttatggatatcgtttttcagtggtcgtttcgtaaaagagtgtgttttaggtggtgatgtttattttggtgggtgttg 199  Q
    |||||||| ||||||||||||| || |||||| || ||  | | | ||||| ||||||||||||||||| ||||||||||    
T  40689597 tggttatgaatatcgtttttcaatgatcgttttgtgaagaaattttttttaagtggtgatgtttatttttgtgggtgttg 40689518  T

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Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 165 - 199
Target Start/End: Complemental strand, 1652686 - 1652652
Alignment:
Q  165 gttttaggtggtgatgtttattttggtgggtgttg 199  Q
    |||||||| ||||||||||||||||||||||||||    
T  1652686 gttttagggggtgatgtttattttggtgggtgttg 1652652  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 125 - 193
Target Start/End: Complemental strand, 13018162 - 13018094
Alignment:
Q  125 atggatatcgtttttcagtggtcgtttcgtaaaagagtgtgttttaggtggtgatgtttattttggtgg 193  Q
    ||||||||| ||||| |||||| |||| || |  |||| ||||||||||||||| ||| ||||||||||    
T  13018162 atggatatcattttttagtggttgttttgtgatggagtctgttttaggtggtgaagttaattttggtgg 13018094  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 126 - 178
Target Start/End: Original strand, 25647930 - 25647982
Alignment:
Q  126 tggatatcgtttttcagtggtcgtttcgtaaaagagtgtgttttaggtggtga 178  Q
    ||||||||||||||||||||| ||||||| |  |||| ||||||| |||||||    
T  25647930 tggatatcgtttttcagtggtggtttcgtgatggagtatgttttatgtggtga 25647982  T

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Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 165 - 201
Target Start/End: Complemental strand, 30935187 - 30935151
Alignment:
Q  165 gttttaggtggtgatgtttattttggtgggtgttgct 201  Q
    |||||||| |||||||||||||||||||| |||||||    
T  30935187 gttttagggggtgatgtttattttggtggatgttgct 30935151  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 129 - 199
Target Start/End: Complemental strand, 25184990 - 25184921
Alignment:
Q  129 atatcgtttttcagtggtcgtttcgtaaaagagtgtgttttaggtggtgatgtttattttggtgggtgttg 199  Q
    |||||||||||||   |||||||| | ||||||| | ||| ||||||||||||||||||||||||||||||    
T  25184990 atatcgtttttcaacagtcgtttcatgaaagagtctattt-aggtggtgatgtttattttggtgggtgttg 25184921  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 127 - 199
Target Start/End: Complemental strand, 10248402 - 10248328
Alignment:
Q  127 ggatatcgttttt-cagtggtcgttt-cgtaaaagagtgtgttttaggtggtgatgtttattttggtgggtgttg 199  Q
    |||| |||||||| |||||||||||| ||| || |||| ||||||||||||||| || |||||||| ||||||||    
T  10248402 ggatgtcgtttttacagtggtcgttttcgtgaaggagtttgttttaggtggtgacgtgtattttggcgggtgttg 10248328  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 165 - 199
Target Start/End: Complemental strand, 30235927 - 30235893
Alignment:
Q  165 gttttaggtggtgatgtttattttggtgggtgttg 199  Q
    |||||||| ||||||||||||||||||||||||||    
T  30235927 gttttagggggtgatgtttattttggtgggtgttg 30235893  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 120 - 181
Target Start/End: Original strand, 15906910 - 15906971
Alignment:
Q  120 tggttatggatatcgtttttcagtggtcgtttcgtaaaagagtgtgttttaggtggtgatgt 181  Q
    ||||||||||||  ||||||||||||||||||||| || |  | |||||| |||||||||||    
T  15906910 tggttatggatactgtttttcagtggtcgtttcgtgaagggatctgtttttggtggtgatgt 15906971  T

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Target: scaffold0499 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0499
Description:

Target: scaffold0499; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 166 - 199
Target Start/End: Original strand, 6828 - 6861
Alignment:
Q  166 ttttaggtggtgatgtttattttggtgggtgttg 199  Q
    ||||||||||||||||||||||||||||||||||    
T  6828 ttttaggtggtgatgtttattttggtgggtgttg 6861  T

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Target: scaffold0050 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 126 - 197
Target Start/End: Original strand, 36952 - 37024
Alignment:
Q  126 tggatatcgttttt-cagtggtcgtttcgtaaaagagtgtgttttaggtggtgatgtttattttggtgggtgt 197  Q
    ||||| |||||||| ||||||| ||||||| || |||| ||||||||||||||| || ||||||| |||||||    
T  36952 tggatgtcgtttttacagtggtggtttcgtgaaggagtctgttttaggtggtgacgtgtattttgttgggtgt 37024  T

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