View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1946_low_32 (Length: 450)
Name: NF1946_low_32
Description: NF1946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1946_low_32 |
 | |
|
| [»] scaffold0078 (2 HSPs) |
| | |
|
| [»] scaffold0070 (2 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 343; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 47 - 432
Target Start/End: Original strand, 25862098 - 25862481
Alignment:
| Q |
47 |
atccataaaatattagtcattgtgtttccttctagatttgacataaaataaaattacgcttgatggaatattcatatagtaatcatgccaatgtgtatac |
146 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
25862098 |
atccataaaatattagtcattgtgtttccttctagatttgacataaaataaaattacgcttgatggaatattcatatagtaatcatgctaatgtttatac |
25862197 |
T |
|
| Q |
147 |
acattagatgcacatacacaatgaatcacaacatgtgaaatttgtttcaaagaccaaaaatgtaaaatcaatttgcagtgacaaacacaacatcaaaaga |
246 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
25862198 |
acattagatgcacatacacaatgaatcacaacatgtgaaatttgtttcaaagaccacaaatgtaaaatcaatttgcagggacaaacacaacatcaaaaga |
25862297 |
T |
|
| Q |
247 |
agtagcacaaaaatacataattttaatttaaacatgactactcaaaattatctctggatccacacatgcaattgtaattcaatcatgattaacatattct |
346 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |||| |||||||||||||||||||||||||||||||| |
|
|
| T |
25862298 |
agtagcacaaaaatacataattttaatttgaacatgactactcaaaattatatctggatccatacatacaattgtaattcaatcatgattaacatattct |
25862397 |
T |
|
| Q |
347 |
taaagcaaactcaatatatgaataaaccaaatctcaaatccactcaaataatagagtagaaccgatgaccatgtataaaggaaact |
432 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25862398 |
taaagcaaactc--tatatgaataaaccaaatctcaaatccactcaaataatagagtagaaccgatgaccatgtataaaggaaact |
25862481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 30 - 177
Target Start/End: Original strand, 4010934 - 4011081
Alignment:
| Q |
30 |
tgaatatgcaaagtttgatccataaaatattagtcattgtgtttccttctagatttgacataaaataaaattacgcttgatggaatattcatatagtaat |
129 |
Q |
| |
|
||||||||||||||||||||| |||||||||| | || | |||||||| ||||||| |||||||||| ||| ||||||||||||||||||||||| || |
|
|
| T |
4010934 |
tgaatatgcaaagtttgatccttaaaatattaataatagcatttccttcaggatttgagataaaataaatttatgcttgatggaatattcatatagtgat |
4011033 |
T |
|
| Q |
130 |
catgccaatgtgtatacacattagatgcacatacacaatgaatcacaa |
177 |
Q |
| |
|
||||||| | || ||| |||||||||||| |||||||||||||||| |
|
|
| T |
4011034 |
gatgccaacttttacacatattagatgcacaaacacaatgaatcacaa |
4011081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 228 - 319
Target Start/End: Original strand, 4011168 - 4011260
Alignment:
| Q |
228 |
caaacacaacatcaaaagaagtagcacaaaa-atacataattttaatttaaacatgactactcaaaattatctctggatccacacatgcaatt |
319 |
Q |
| |
|
|||||| ||||||||||| |||||||||||| ||| || || ||||||| ||||| || |||||||||| | | | ||||||||||||||||| |
|
|
| T |
4011168 |
caaacataacatcaaaaggagtagcacaaaagatatatgatattaatttgaacatcacaactcaaaattgtatttcgatccacacatgcaatt |
4011260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0078 (Bit Score: 120; Significance: 3e-61; HSPs: 2)
Name: scaffold0078
Description:
Target: scaffold0078; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 204 - 391
Target Start/End: Complemental strand, 7546 - 7360
Alignment:
| Q |
204 |
aaatgtaaaatcaatttgcagtgacaaacacaacatcaaaagaagtagcacaaaaatacataattttaatttaaacatgactactcaaaattatctctgg |
303 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |||||| |||||||||| |||||||||||| | | ||| |
|
|
| T |
7546 |
aaatgtaaaatcaatttgcagcaacaaacacaacatcaaaaggagtagcacaaaaatacatgattttattttaaacatggctactcaaaattgtat-tgg |
7448 |
T |
|
| Q |
304 |
atccacacatgcaattgtaattcaatcatgattaacatattcttaaagcaaactcaatatatgaataaaccaaatctcaaatccactc |
391 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| |||||||| |||||| ||| ||||| |||||||||||||||| |||||||||||| |
|
|
| T |
7447 |
atccacacatacaattgtaattcaatcatgataaacatattgttaaagaaaaatcaatctatgaataaaccaaatttcaaatccactc |
7360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0078; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 19 - 193
Target Start/End: Complemental strand, 7757 - 7583
Alignment:
| Q |
19 |
tcaaatccttttgaatatgcaaagtttgatccataaaatattagtcattgtgtttccttctagatttgacataaaataaaattacgcttgatggaatatt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||| |||| ||||||||||| |||||| |||||||||||||| |||||||||| | || |
|
|
| T |
7757 |
tcaaatccttttgaatatgcaaagtttgattcataaaatattaatcatggtgtttccttccgaatttgagataaaataaaattatgcttgatggagtttt |
7658 |
T |
|
| Q |
119 |
catatagtaatcatgccaatgtgtatacacattagatgcacatacacaatgaatcacaacatgtgaaatttgttt |
193 |
Q |
| |
|
|| |||||||||| |||||||| ||||||||||||||||||||| ||| |||||||||||||||||||||||||| |
|
|
| T |
7657 |
cacatagtaatcaagccaatgtttatacacattagatgcacatatacattgaatcacaacatgtgaaatttgttt |
7583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 111; Significance: 7e-56; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 13 - 295
Target Start/End: Complemental strand, 25708399 - 25708100
Alignment:
| Q |
13 |
atcaactcaaatccttttgaatatgcaaagtttgatccataaaatattagtcattgtgtttccttctagatttgacataaaataaaattacgcttgatgg |
112 |
Q |
| |
|
||||| || |||||||||||||||||||||||||||||||||||||||| |||| ||| |||| || ||||||| ||||||||||||||||||||||| |
|
|
| T |
25708399 |
atcaaatccaatccttttgaatatgcaaagtttgatccataaaatattaatcatggtggttccatccggatttgagataaaataaaattacgcttgatga |
25708300 |
T |
|
| Q |
113 |
aatattcatatagtaatcatgccaatgtgtatacacattagatgcacatacacaatgaatcacaacatgtgaaatttgtttcaaagacc----------- |
201 |
Q |
| |
|
| ||||||||| ||||||||| ||||| ||||||| |||||||||||||||||||||||||||| || | |||||||||||||| ||| |
|
|
| T |
25708299 |
agtattcatatggtaatcatgtcaatgcgtatacatattagatgcacatacacaatgaatcacatgatattaaatttgtttcaaaaaccgccttatggca |
25708200 |
T |
|
| Q |
202 |
-----aaaaatgtaaaatcaatttgcagtgacaaacacaacatcaaaagaagtagcacaaaa-atacataattttaatttaaacatgactactcaaaatt |
295 |
Q |
| |
|
| | | ||||||||||| |||||||||| ||||||||||||| ||||| |||||| |||||| || ||||||| ||||||||||||||||||| |
|
|
| T |
25708199 |
aagaaacagacataaaatcaattcgcagtgacaactacaacatcaaaaggagtagtacaaaagatacatgatattaatttgaacatgactactcaaaatt |
25708100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 13 - 178
Target Start/End: Complemental strand, 25374686 - 25374522
Alignment:
| Q |
13 |
atcaactcaaatccttttgaatatgcaaagtttgatccataaaatattagtcattgtgtttccttctagatttgacataaaataaaattacgcttgatgg |
112 |
Q |
| |
|
||||| || |||||||||||||||||||| ||||||||||||||||||| |||| |||||||| || ||||||| |||||| |||||||||||| |
|
|
| T |
25374686 |
atcaaatccaatccttttgaatatgcaaaatttgatccataaaatattaatcatggtgtttccatccggatttgagataaaaattttttacgcttgatg- |
25374588 |
T |
|
| Q |
113 |
aatattcatatagtaatcatgccaatgtgtatacacattagatgcacatacacaatgaatcacaac |
178 |
Q |
| |
|
||||||||||| ||||||||| ||||| ||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
25374587 |
aatattcatatggtaatcatgtcaatgcgtatacatattagatgcacatacacaatgaatcacaac |
25374522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 209 - 412
Target Start/End: Complemental strand, 25374467 - 25374269
Alignment:
| Q |
209 |
taaaatcaatttgcagtgacaaacacaacatcaaaagaagtagcacaaaa-atacataattttaatttaaacatgactactcaaaattatctctggatcc |
307 |
Q |
| |
|
||||||||||| |||||||||| ||||||||||||||||||| |||||| |||||| || ||||||| ||||||| ||||||||||| ||| | |||| |
|
|
| T |
25374467 |
taaaatcaatt-gcagtgacaactacaacatcaaaagaagtagtacaaaagatacatgatgttaatttgaacatgaatactcaaaattgtctttcaatcc |
25374369 |
T |
|
| Q |
308 |
acacatgcaattgtaattcaatcatgattaacatattcttaaagcaaactcaatatatgaataaaccaaatctcaaatccactcaaataatagagtagaa |
407 |
Q |
| |
|
||||||||||||| |||||||||||||| |||||| ||||||| |||| ||| || |||||| ||||||||||||| ||| |||||||||||||||| |
|
|
| T |
25374368 |
acacatgcaattgcaattcaatcatgataaacatactcttaaa-caaattca----atcaataaatcaaatctcaaatctactgaaataatagagtagaa |
25374274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 209 - 412
Target Start/End: Complemental strand, 25403279 - 25403080
Alignment:
| Q |
209 |
taaaatcaatttgcagtgacaaacacaacatcaaaagaagtagcacaaaa-atacataattttaatttaaacatgactactcaaaattatctctggatcc |
307 |
Q |
| |
|
||||||||||||| ||||||| ||||||||||||| ||||| |||||| |||||| || ||||||| |||| |||||||||||||| ||| || |||| |
|
|
| T |
25403279 |
taaaatcaatttgtggtgacaactacaacatcaaaaggagtagtacaaaagatacatgatgttaatttgaacaggactactcaaaattgtctttgaatcc |
25403180 |
T |
|
| Q |
308 |
acacatgcaattgtaattcaatcatgattaacatattcttaaagcaaactcaatatatgaataaaccaaatctcaaatccactcaaataatagagtagaa |
407 |
Q |
| |
|
||||||||||||| |||||||||||||| |||||| ||||||| |||| ||| || |||||| ||||||||||||||||| ||||||| ||| |||| |
|
|
| T |
25403179 |
acacatgcaattgcaattcaatcatgataaacatactcttaaa-caaattca----atcaataaatcaaatctcaaatccactgaaataattgagaagaa |
25403085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 260 - 412
Target Start/End: Complemental strand, 25708098 - 25707953
Alignment:
| Q |
260 |
tacataattttaatttaaacatgactactcaaaattatctctggatccacacatgcaattgtaattcaatcatgattaacatattcttaaagcaaactca |
359 |
Q |
| |
|
||||| || ||||||| |||||||||| |||||||| || || ||||||||||| ||||| |||||||||||||| || ||| ||||||| |||| ||| |
|
|
| T |
25708098 |
tacatgatgttaatttgaacatgactattcaaaatt--ctttgaatccacacatgaaattgcaattcaatcatgataaatatactcttaaa-caaattca |
25708002 |
T |
|
| Q |
360 |
atatatgaataaaccaaatctcaaatccactcaaataatagagtagaaccgat |
412 |
Q |
| |
|
|| |||||| ||||||||||||||||| |||||||||||||||| |||| |
|
|
| T |
25708001 |
----atcaataaatcaaatctcaaatccactgaaataatagagtagaaacgat |
25707953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 22 - 75
Target Start/End: Complemental strand, 25403449 - 25403396
Alignment:
| Q |
22 |
aatccttttgaatatgcaaagtttgatccataaaatattagtcattgtgtttcc |
75 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||| |||||||| |
|
|
| T |
25403449 |
aatccttttgaatatgcaaagtttgatccataaaatattaaccatggtgtttcc |
25403396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 125 - 178
Target Start/End: Complemental strand, 25403386 - 25403333
Alignment:
| Q |
125 |
gtaatcatgccaatgtgtatacacattagatgcacatacacaatgaatcacaac |
178 |
Q |
| |
|
||||||||| ||||| ||||||| |||||||| ||||||||||||||||||||| |
|
|
| T |
25403386 |
gtaatcatgtcaatgcgtatacatattagatgtacatacacaatgaatcacaac |
25403333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 66; Significance: 5e-29; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 13 - 178
Target Start/End: Complemental strand, 16664609 - 16664439
Alignment:
| Q |
13 |
atcaactcaaatcc-ttttgaatatgcaaagtttgatccataaaatatt----agtcattgtgtttccttctagatttgacataaaataaaattacgctt |
107 |
Q |
| |
|
||||| |||||||| ||||||||||||||| |||||||||||||||||| | |||| ||||||||||| | ||||| ||||||| ||| || |||| |
|
|
| T |
16664609 |
atcaaatcaaatccattttgaatatgcaaactttgatccataaaatatttattaatcatggtgtttccttccgggtttgagataaaattaaagtaagctt |
16664510 |
T |
|
| Q |
108 |
gatggaatattcatatagtaatcatgccaatgtgtatacacattagatgcacatacacaatgaatcacaac |
178 |
Q |
| |
|
| ||||||||||||| || |||||| |||||| || ||| |||||||||||||| ||||||||||||||| |
|
|
| T |
16664509 |
gtcggaatattcatatggtgatcatgtcaatgtttacacatattagatgcacatatacaatgaatcacaac |
16664439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 209 - 368
Target Start/End: Complemental strand, 16664383 - 16664224
Alignment:
| Q |
209 |
taaaatcaatttgcagtgacaaacacaacatcaaaagaagtagcacaaaa-atacataattttaatttaaacatgactactcaaaattatctctggatcc |
307 |
Q |
| |
|
||||||||||||||||| |||| |||||||||||||||||||||||||| |||||| | | ||||| ||||| ||||||||||||| | || ||||| |
|
|
| T |
16664383 |
taaaatcaatttgcagtaacaactacaacatcaaaagaagtagcacaaaagatacat--tgtaaatttgaacataactactcaaaattgtttcaagatcc |
16664286 |
T |
|
| Q |
308 |
acacatgcaattgtaattcaatcatgattaacatattctt-aaagcaaactcaatatatgaa |
368 |
Q |
| |
|
| |||| |||||| ||||||||||| || | ||||||||| |||||||| ||||| |||||| |
|
|
| T |
16664285 |
aaacatacaattgcaattcaatcataataaccatattcttaaaagcaaattcaatttatgaa |
16664224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0070 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: scaffold0070
Description:
Target: scaffold0070; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 272 - 412
Target Start/End: Original strand, 56783 - 56918
Alignment:
| Q |
272 |
atttaaacatgactactcaaaattatctctggatccacacatgcaattgtaattcaatcatgattaacatattcttaaagcaaactcaatatatgaataa |
371 |
Q |
| |
|
|||||||||||||||||||||||| ||| || |||||||||||| |||| |||||||||||||| |||||| ||||||| |||| ||| || ||||| |
|
|
| T |
56783 |
atttaaacatgactactcaaaattgtctttgaatccacacatgcgattgcaattcaatcatgataaacatactcttaaa-caaattca----atcaataa |
56877 |
T |
|
| Q |
372 |
accaaatctcaaatccactcaaataatagagtagaaccgat |
412 |
Q |
| |
|
| ||||||||||||||||| ||||||| ||| |||| |||| |
|
|
| T |
56878 |
atcaaatctcaaatccactgaaataattgagaagaaacgat |
56918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0070; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 143 - 178
Target Start/End: Original strand, 56655 - 56690
Alignment:
| Q |
143 |
atacacattagatgcacatacacaatgaatcacaac |
178 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| |
|
|
| T |
56655 |
atacatattagatgcacatacacaatgaatcacaac |
56690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 7e-16; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 284 - 390
Target Start/End: Complemental strand, 25479620 - 25479513
Alignment:
| Q |
284 |
ctactcaaaattatctctggatccacacatgcaattgtaattcaatcatgattaacatattcttaaagcaaactcaatatatgaataa-accaaatctca |
382 |
Q |
| |
|
|||||||||||| ||| |||||||||||||||||||| |||| |||||| || |||||| ||||||| | || |||| ||||||||| |||||||||| |
|
|
| T |
25479620 |
ctactcaaaattgtctatggatccacacatgcaattgaaattgaatcattataaacatagtcttaaaaccaattcaacctatgaataatgccaaatctca |
25479521 |
T |
|
| Q |
383 |
aatccact |
390 |
Q |
| |
|
||| |||| |
|
|
| T |
25479520 |
aattcact |
25479513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 50 - 107
Target Start/End: Complemental strand, 15115691 - 15115634
Alignment:
| Q |
50 |
cataaaatattagtcattgtgtttccttctagatttgacataaaataaaattacgctt |
107 |
Q |
| |
|
|||||||||||| |||| |||||||||||| |||||| |||||||||||||| |||| |
|
|
| T |
15115691 |
cataaaatattaatcatggtgtttccttctgaatttgagataaaataaaattaggctt |
15115634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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