View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1946_low_35 (Length: 447)
Name: NF1946_low_35
Description: NF1946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1946_low_35 |
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Alignment Details
Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 31 - 295
Target Start/End: Complemental strand, 44688802 - 44688538
Alignment:
| Q |
31 |
tgagcgtgactacatcaagactgagatcaacttcacccgggaacccaaaaccatgagagtcatagaggttcactagcaacaacgcaccttcactctctac |
130 |
Q |
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| T |
44688802 |
tgagcgtgaacacatcaagccgtagaccatcttcacccgggaacccaaaaccatgagagtcatagatgtccactagcaacaactcaccttcactctctac |
44688703 |
T |
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| Q |
131 |
caggaattttatgtcccctccaacaacatgtttagccacttattgcacactaaagtccgctgctccataagcaaatgtccgaccaattttattgactata |
230 |
Q |
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| T |
44688702 |
caggaattttatgtcccctccatcaacatgtttagccacttgttgcacactaaagtccgctgctccataagcaaatgtccgaccaattttattgactata |
44688603 |
T |
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| Q |
231 |
taaaacagctctttaaaaacacatatgtctacaaagtgtgttgacatgcggggcatcagctccca |
295 |
Q |
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| T |
44688602 |
taaaacagctctttaaaaacacatatgtctacaaagtgtgttgacatgcggggcatcagctccca |
44688538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 329 - 445
Target Start/End: Complemental strand, 44688537 - 44688421
Alignment:
| Q |
329 |
tccgttactatgtaattggcacagagcaacaggtttatttccatggcatgtgacagcagcaacctttcttcgccccttttttctcagcttctaccttatt |
428 |
Q |
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| T |
44688537 |
tccgttactatgtaattcgcacagagcaacaggtttatttccatggcatgtgacagcagcaacctttcttcgccccttttttctcagcttctaccttatt |
44688438 |
T |
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| Q |
429 |
ctaaacagctccctttg |
445 |
Q |
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| T |
44688437 |
ctaaacagctccctttg |
44688421 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 62 - 152
Target Start/End: Complemental strand, 13170670 - 13170580
Alignment:
| Q |
62 |
ttcacccgggaacccaaaaccatgagagtcatagaggttcactagcaacaacgcaccttcactctctaccaggaattttatgtcccctcca |
152 |
Q |
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| T |
13170670 |
ttcaccagggaaaccgtaacgatgagggtcatagatgtccactagcaacaactcaccctcgctctcgaccaagaatttcatgtcccctcca |
13170580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 69 - 279
Target Start/End: Original strand, 18991338 - 18991545
Alignment:
| Q |
69 |
gggaacccaaaaccatgagagtcatagaggttcactagcaacaacgcaccttcactctctaccaggaattttatgtcccctccaacaacatgtttagcca |
168 |
Q |
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| T |
18991338 |
gggaacccaaaacaatgcgagtcacagatgtccactagcaacaactcaccttcacactctaccaagaatttcatatcccctccattcacatattcagcca |
18991437 |
T |
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| Q |
169 |
cttattgcacactaaagtccgctgctccataagcaaatgtccgaccaattttattgactatataaaacagctctttaaaaacacatatgtctacaaagtg |
268 |
Q |
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| T |
18991438 |
ctaactcaacactatagtcc---aatccaaacgcaactgtcctaccaattttattaaccgcataaaaccgctctttaaacacgcagatgtctagaaagta |
18991534 |
T |
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| Q |
269 |
tgttgacatgc |
279 |
Q |
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| T |
18991535 |
cgttgacatgc |
18991545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 61 - 276
Target Start/End: Original strand, 41985757 - 41985972
Alignment:
| Q |
61 |
cttcacccgggaacccaaaaccatgagagtcatagaggttcactagcaacaacg---caccttcactctctaccaggaattttatgtcccctccaacaac |
157 |
Q |
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| T |
41985757 |
cttcaccggggaaaccaaaacaatgagagtcatatatgtctactagcaacaactgatcaccctcactctctaccaggaatttcatgtcccctccatccac |
41985856 |
T |
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| Q |
158 |
atgtttagccacttattgcacactaaagtccgctgctccataagcaaatgtccgaccaattttattgactatataaaacagctctttaaaaacacatatg |
257 |
Q |
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| T |
41985857 |
atattcagccaataactcgacactatagtcc---ggtccaaaagcaactgtcctgccaattttattaactgcacaaaaccggtctttaaacacgcagatg |
41985953 |
T |
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| Q |
258 |
tctacaaagtgtgttgaca |
276 |
Q |
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| T |
41985954 |
tctagaaagtacgttgaca |
41985972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 42 - 139
Target Start/End: Original strand, 41980964 - 41981061
Alignment:
| Q |
42 |
acatcaagactgagatcaacttcacccgggaacccaaaaccatgagagtcatagaggttcactagcaacaacgcaccttcactctctaccaggaattt |
139 |
Q |
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| T |
41980964 |
acatcaagattgaaaccatcttcaccagggaacccaacacaatgagagtgataaatgtccactagcaataattcaccctcactctctaccaggaattt |
41981061 |
T |
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