View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1946_low_40 (Length: 435)
Name: NF1946_low_40
Description: NF1946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1946_low_40 |
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Alignment Details
Target: chr6 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 7 - 413
Target Start/End: Complemental strand, 30023501 - 30023096
Alignment:
| Q |
7 |
tcgaagaatatgacactttagaaattcaatcaaatttttgacccaaccgatgtttttggactttcaaaggtgttatgtcacataccaaatgtactttaat |
106 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
30023501 |
tcgaagaaaatgacactttagaaattcaatcaaatttttgacccaaccgatgtttttggactttcaaaggtgttatgtcacataccaaatgtactgtaat |
30023402 |
T |
|
| Q |
107 |
accaaaatttggtacatttagatgcaatggttatattttggagacaatttaaatctctaattttttaaaagccttaaatcagaagatcatcctcttctcg |
206 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30023401 |
accaaaatttggtaaatttagatgcaatggttatattttggagacaatttaaatctctaattttttaaaagccttaaatcagaagatcatcctcttctcg |
30023302 |
T |
|
| Q |
207 |
ctattaagttcaaatnnnnnnnnnnnnnnntaatcacctttctctttcttcatttccctttatttcttcctcgcttaaatcaaattctcgtaactttcta |
306 |
Q |
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|| |||||||||||| |||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| |||||||||| |
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| T |
30023301 |
ctcttaagttcaaat-aaaaaaataaaaaataatcacctttctccttcttcatttccctttatttcttcctcacttaaatcaaattctcataactttcta |
30023203 |
T |
|
| Q |
307 |
acttttaagggactaaaattgtatttttgtattttgtgaggactaattaaatatgaattttcataatatatacccctcaataatagcttttgctttcaga |
406 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
30023202 |
acttttaagggactaaaattgtatttttgtattttgtgaggactaattaaatatgaattttcataatatatacacctcaataatagcttttgctttcaga |
30023103 |
T |
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| Q |
407 |
cagatcc |
413 |
Q |
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||||||| |
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| T |
30023102 |
cagatcc |
30023096 |
T |
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