View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1946_low_41 (Length: 435)

Name: NF1946_low_41
Description: NF1946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1946_low_41
NF1946_low_41
[»] chr7 (3 HSPs)
chr7 (183-313)||(45117128-45117253)
chr7 (19-95)||(45117340-45117416)
chr7 (357-424)||(45117015-45117082)
[»] scaffold0583 (3 HSPs)
scaffold0583 (19-97)||(7765-7843)
scaffold0583 (183-313)||(7552-7679)
scaffold0583 (357-424)||(7441-7508)
[»] chr2 (8 HSPs)
chr2 (357-424)||(24257086-24257153)
chr2 (357-424)||(2878121-2878188)
chr2 (357-424)||(21416076-21416143)
chr2 (19-71)||(21409899-21409951)
chr2 (19-74)||(19815401-19815456)
chr2 (19-66)||(39437364-39437411)
chr2 (19-74)||(39440073-39440128)
chr2 (364-424)||(19815198-19815258)
[»] chr1 (3 HSPs)
chr1 (357-424)||(16651691-16651758)
chr1 (359-423)||(2347127-2347191)
chr1 (19-96)||(16047155-16047232)
[»] chr8 (3 HSPs)
chr8 (357-424)||(21107441-21107508)
chr8 (19-96)||(14106258-14106335)
chr8 (22-96)||(33856026-33856100)
[»] chr4 (2 HSPs)
chr4 (357-424)||(49715035-49715102)
chr4 (22-96)||(31926969-31927043)
[»] chr3 (2 HSPs)
chr3 (357-424)||(37798870-37798937)
chr3 (22-96)||(41758008-41758082)
[»] scaffold0029 (1 HSPs)
scaffold0029 (357-424)||(131038-131105)
[»] scaffold0002 (1 HSPs)
scaffold0002 (357-424)||(308855-308922)
[»] chr5 (2 HSPs)
chr5 (19-74)||(14188903-14188958)
chr5 (364-421)||(14188698-14188755)
[»] scaffold0356 (1 HSPs)
scaffold0356 (19-96)||(3683-3760)
[»] chr6 (2 HSPs)
chr6 (380-424)||(24200993-24201037)
chr6 (381-424)||(4214354-4214397)
[»] scaffold0122 (1 HSPs)
scaffold0122 (19-72)||(31724-31777)


Alignment Details
Target: chr7 (Bit Score: 69; Significance: 8e-31; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 183 - 313
Target Start/End: Complemental strand, 45117253 - 45117128
Alignment:
Q  183 caattaattggatataaacnnnnnnnnttccaaggagtcaaacaaaaattattgatataatcgcgccaaattatttctttcatatatatnnnnnnnnnnn 282  Q
    |||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||               
T  45117253 caattaattggatataaacaaaaaaaattccaaggagtcaaacaaaaattattgatataatcgcgccaaattatttctttcatatatat-----aaaaaa 45117159  T
Q  283 ttgaactccttcatatagttacacacaacat 313  Q
    |||||||||||||||||||||||||||||||    
T  45117158 ttgaactccttcatatagttacacacaacat 45117128  T

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Target: chr7; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 19 - 95
Target Start/End: Complemental strand, 45117416 - 45117340
Alignment:
Q  19 gattcgaccatcgatactcgaaatttcgtgatgcgaatgggagatatcggaaacgatttcaaccggtgtcatcttta 95  Q
    ||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  45117416 gattcgaccatcgatactccaaatttcgtgattcgaatgggagatatcggaaacgatttcaaccggtgtcatcttta 45117340  T

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Target: chr7; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 357 - 424
Target Start/End: Complemental strand, 45117082 - 45117015
Alignment:
Q  357 tggaatcaaacaaccttattgttcattaaaaccatttccaataagtaaggaagttgatcctttttcat 424  Q
    |||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  45117082 tggaatcaaacaactttattgttcattaaaaccatttccaatgagtaaggaagttgatcctttttcat 45117015  T

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Target: scaffold0583 (Bit Score: 67; Significance: 1e-29; HSPs: 3)
Name: scaffold0583
Description:

Target: scaffold0583; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 19 - 97
Target Start/End: Complemental strand, 7843 - 7765
Alignment:
Q  19 gattcgaccatcgatactcgaaatttcgtgatgcgaatgggagatatcggaaacgatttcaaccggtgtcatctttatc 97  Q
    ||||||||||| ||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  7843 gattcgaccattgatactccaaatttcgtgatgcgaatgggagatatcagaaacgatttcaaccggtgtcatctttatc 7765  T

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Target: scaffold0583; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 183 - 313
Target Start/End: Complemental strand, 7679 - 7552
Alignment:
Q  183 caattaattggatataaacnnnnnnnnttccaaggagtcaaacaaaaattattgatataatcgcgccaaattatttctttcatatatatnnnnnnnnnnn 282  Q
    |||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||               
T  7679 caattaattggatataaacaaaaaaaattccaaggagtcaaacaaaaattattgatataatcgcgccaaattatttctttcatatatataaaaaaaaa-- 7582  T
Q  283 ttgaactccttcatatagttacacacaacat 313  Q
     ||||||||||||||||||||||||||||||    
T  7581 -tgaactccttcatatagttacacacaacat 7552  T

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Target: scaffold0583; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 357 - 424
Target Start/End: Complemental strand, 7508 - 7441
Alignment:
Q  357 tggaatcaaacaaccttattgttcattaaaaccatttccaataagtaaggaagttgatcctttttcat 424  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||    
T  7508 tggaatcaaacaaccttattgttcattaaaaccatttccaatgagtaaggaagttaatcctttttcat 7441  T

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Target: chr2 (Bit Score: 56; Significance: 5e-23; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 357 - 424
Target Start/End: Complemental strand, 24257153 - 24257086
Alignment:
Q  357 tggaatcaaacaaccttattgttcattaaaaccatttccaataagtaaggaagttgatcctttttcat 424  Q
    |||||||||||||||||||||| ||||||||||||||||||  |||||||||||||||||||||||||    
T  24257153 tggaatcaaacaaccttattgtccattaaaaccatttccaaggagtaaggaagttgatcctttttcat 24257086  T

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Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 357 - 424
Target Start/End: Complemental strand, 2878188 - 2878121
Alignment:
Q  357 tggaatcaaacaaccttattgttcattaaaaccatttccaataagtaaggaagttgatcctttttcat 424  Q
    |||||||||||||||||||||| ||||||||||||||||||  |||||| ||||||||||||||||||    
T  2878188 tggaatcaaacaaccttattgtccattaaaaccatttccaaggagtaagaaagttgatcctttttcat 2878121  T

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Target: chr2; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 357 - 424
Target Start/End: Original strand, 21416076 - 21416143
Alignment:
Q  357 tggaatcaaacaaccttattgttcattaaaaccatttccaataagtaaggaagttgatcctttttcat 424  Q
    |||||||||||||||||||| | ||| ||||||||||||||  |||||||||||||||||||||||||    
T  21416076 tggaatcaaacaaccttattatccatcaaaaccatttccaaggagtaaggaagttgatcctttttcat 21416143  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 21409899 - 21409951
Alignment:
Q  19 gattcgaccatcgatactcgaaatttcgtgatgcgaatgggagatatcggaaa 71  Q
    ||||| ||||||||||||| ||||||| | ||||||||| |||||||||||||    
T  21409899 gattcaaccatcgatactccaaatttcttaatgcgaatgagagatatcggaaa 21409951  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 74
Target Start/End: Complemental strand, 19815456 - 19815401
Alignment:
Q  19 gattcgaccatcgatactcgaaatttcgtgatgcgaatgggagatatcggaaacga 74  Q
    |||||||| || || |||| || |||| ||||||||||||||||||||||||||||    
T  19815456 gattcgactattgacactccaagtttcttgatgcgaatgggagatatcggaaacga 19815401  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 66
Target Start/End: Complemental strand, 39437411 - 39437364
Alignment:
Q  19 gattcgaccatcgatactcgaaatttcgtgatgcgaatgggagatatc 66  Q
    ||||||||||||||||||| || |||| |||||||||||||| |||||    
T  39437411 gattcgaccatcgatactccaagtttcttgatgcgaatgggaaatatc 39437364  T

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Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 74
Target Start/End: Complemental strand, 39440128 - 39440073
Alignment:
Q  19 gattcgaccatcgatactcgaaatttcgtgatgcgaatgggagatatcggaaacga 74  Q
    |||||||||||||| |||| || |||| |||||  |||||||||||||||||||||    
T  39440128 gattcgaccatcgacactccaagtttcttgatgtaaatgggagatatcggaaacga 39440073  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 364 - 424
Target Start/End: Complemental strand, 19815258 - 19815198
Alignment:
Q  364 aaacaaccttattgttcattaaaaccatttccaataagtaaggaagttgatcctttttcat 424  Q
    ||||||||||||||| ||||| ||||||||  ||  || |||||||||| |||||||||||    
T  19815258 aaacaaccttattgtccattagaaccatttttaaggagaaaggaagttggtcctttttcat 19815198  T

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Target: chr1 (Bit Score: 56; Significance: 5e-23; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 357 - 424
Target Start/End: Complemental strand, 16651758 - 16651691
Alignment:
Q  357 tggaatcaaacaaccttattgttcattaaaaccatttccaataagtaaggaagttgatcctttttcat 424  Q
    |||||||||||||||||||||| ||||||||||||||||||  |||||||||||||||||||||||||    
T  16651758 tggaatcaaacaaccttattgtccattaaaaccatttccaaggagtaaggaagttgatcctttttcat 16651691  T

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Target: chr1; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 359 - 423
Target Start/End: Original strand, 2347127 - 2347191
Alignment:
Q  359 gaatcaaacaaccttattgttcattaaaaccatttccaataagtaaggaagttgatcctttttca 423  Q
    |||||||||||||||||||| ||||||||||||||||||  ||||||||||||||||||||||||    
T  2347127 gaatcaaacaaccttattgtccattaaaaccatttccaaagagtaaggaagttgatcctttttca 2347191  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 19 - 96
Target Start/End: Original strand, 16047155 - 16047232
Alignment:
Q  19 gattcgaccatcgatactcgaaatttcgtgatgcgaatgggagatatcggaaacgatttcaaccggtgtcatctttat 96  Q
    |||||||| || ||||||| ||||||| ||||| ||||||||||||||| |||||| ||||| |||| |||| |||||    
T  16047155 gattcgacaattgatactccaaatttcatgatgtgaatgggagatatcgaaaacgaattcaatcggtatcatttttat 16047232  T

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Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 357 - 424
Target Start/End: Complemental strand, 21107508 - 21107441
Alignment:
Q  357 tggaatcaaacaaccttattgttcattaaaaccatttccaataagtaaggaagttgatcctttttcat 424  Q
    |||||||||||||||||||||| ||||||||||||||||||  ||||| |||||||||||||||||||    
T  21107508 tggaatcaaacaaccttattgtccattaaaaccatttccaaggagtaatgaagttgatcctttttcat 21107441  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 19 - 96
Target Start/End: Complemental strand, 14106335 - 14106258
Alignment:
Q  19 gattcgaccatcgatactcgaaatttcgtgatgcgaatgggagatatcggaaacgatttcaaccggtgtcatctttat 96  Q
    |||||||| || ||||||| ||||||| ||||| ||||||||||||||| |||||| ||||| |||| |||| |||||    
T  14106335 gattcgacaattgatactccaaatttcatgatgtgaatgggagatatcgaaaacgaattcaatcggtatcatttttat 14106258  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 22 - 96
Target Start/End: Complemental strand, 33856100 - 33856026
Alignment:
Q  22 tcgaccatcgatactcgaaatttcgtgatgcgaatgggagatatcggaaacgatttcaaccggtgtcatctttat 96  Q
    ||||| || ||||||| ||||||| ||||| ||||||||||||||| |||||| ||||| |||| |||| |||||    
T  33856100 tcgacaattgatactccaaatttcatgatgtgaatgggagatatcgaaaacgaattcaatcggtttcatttttat 33856026  T

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Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 357 - 424
Target Start/End: Original strand, 49715035 - 49715102
Alignment:
Q  357 tggaatcaaacaaccttattgttcattaaaaccatttccaataagtaaggaagttgatcctttttcat 424  Q
    |||||||||||||||||||||| ||||||||||||||||||  | |||||||||||||||||||||||    
T  49715035 tggaatcaaacaaccttattgtccattaaaaccatttccaaggaataaggaagttgatcctttttcat 49715102  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 22 - 96
Target Start/End: Original strand, 31926969 - 31927043
Alignment:
Q  22 tcgaccatcgatactcgaaatttcgtgatgcgaatgggagatatcggaaacgatttcaaccggtgtcatctttat 96  Q
    ||||| || ||||||| ||||||| ||||| ||| ||||||||||| |||||| ||||| |||| |||| |||||    
T  31926969 tcgacaattgatactccaaatttcatgatgtgaacgggagatatcgaaaacgaattcaatcggtttcatttttat 31927043  T

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Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 357 - 424
Target Start/End: Complemental strand, 37798937 - 37798870
Alignment:
Q  357 tggaatcaaacaaccttattgttcattaaaaccatttccaataagtaaggaagttgatcctttttcat 424  Q
    |||||||||||||||||||||| ||||||||||||||||||  |||||| ||||||||||||||||||    
T  37798937 tggaatcaaacaaccttattgtccattaaaaccatttccaaggagtaagaaagttgatcctttttcat 37798870  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 22 - 96
Target Start/End: Complemental strand, 41758082 - 41758008
Alignment:
Q  22 tcgaccatcgatactcgaaatttcgtgatgcgaatgggagatatcggaaacgatttcaaccggtgtcatctttat 96  Q
    ||||| || ||||||| ||||||| ||||| ||||||||||||||| |||||| ||||| |||| |||| |||||    
T  41758082 tcgacaattgatactccaaatttcatgatgtgaatgggagatatcgaaaacgaattcaatcggtttcatttttat 41758008  T

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Target: scaffold0029 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 357 - 424
Target Start/End: Complemental strand, 131105 - 131038
Alignment:
Q  357 tggaatcaaacaaccttattgttcattaaaaccatttccaataagtaaggaagttgatcctttttcat 424  Q
    |||||||||||||||||||| | ||| ||||||||||||||  |||||||||||||||||||||||||    
T  131105 tggaatcaaacaaccttattatccatgaaaaccatttccaaggagtaaggaagttgatcctttttcat 131038  T

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Target: scaffold0002 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 357 - 424
Target Start/End: Complemental strand, 308922 - 308855
Alignment:
Q  357 tggaatcaaacaaccttattgttcattaaaaccatttccaataagtaaggaagttgatcctttttcat 424  Q
    |||||||||||||||||||| | ||| ||||||||||||||  |||||||||||||||||||||||||    
T  308922 tggaatcaaacaaccttattatccatgaaaaccatttccaaggagtaaggaagttgatcctttttcat 308855  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 19 - 74
Target Start/End: Complemental strand, 14188958 - 14188903
Alignment:
Q  19 gattcgaccatcgatactcgaaatttcgtgatgcgaatgggagatatcggaaacga 74  Q
    |||||||||||||| |||| || |||| ||||||||||||||||||||||||||||    
T  14188958 gattcgaccatcgacactccaattttcttgatgcgaatgggagatatcggaaacga 14188903  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 364 - 421
Target Start/End: Complemental strand, 14188755 - 14188698
Alignment:
Q  364 aaacaaccttattgttcattaaaaccatttccaataagtaaggaagttgatccttttt 421  Q
    ||||||||||||||| ||||| ||||||||| ||  || |||||| ||||||||||||    
T  14188755 aaacaaccttattgtccattagaaccatttctaaggagaaaggaaattgatccttttt 14188698  T

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Target: scaffold0356 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0356
Description:

Target: scaffold0356; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 19 - 96
Target Start/End: Complemental strand, 3760 - 3683
Alignment:
Q  19 gattcgaccatcgatactcgaaatttcgtgatgcgaatgggagatatcggaaacgatttcaaccggtgtcatctttat 96  Q
    |||||||| || ||||||| ||||||| ||||| ||||||||||||||| |||||| ||||| |||| |||| |||||    
T  3760 gattcgacaattgatactccaaatttcatgatgtgaatgggagatatcgaaaacgaattcaatcggtatcatttttat 3683  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 380 - 424
Target Start/End: Original strand, 24200993 - 24201037
Alignment:
Q  380 cattaaaaccatttccaataagtaaggaagttgatcctttttcat 424  Q
    ||||||||||||||||||  ||||||||||||||||| |||||||    
T  24200993 cattaaaaccatttccaaggagtaaggaagttgatcccttttcat 24201037  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 381 - 424
Target Start/End: Complemental strand, 4214397 - 4214354
Alignment:
Q  381 attaaaaccatttccaataagtaaggaagttgatcctttttcat 424  Q
    ||||||||||||| |||  |||||||||||||||||||||||||    
T  4214397 attaaaaccattttcaaggagtaaggaagttgatcctttttcat 4214354  T

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Target: scaffold0122 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 72
Target Start/End: Complemental strand, 31777 - 31724
Alignment:
Q  19 gattcgaccatcgatactcgaaatttcgtgatgcgaatgggagatatcggaaac 72  Q
    |||||||||||||| |||| || |||| |||||| ||| |||||||||||||||    
T  31777 gattcgaccatcgacactccaagtttcttgatgcaaataggagatatcggaaac 31724  T

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