View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1946_low_45 (Length: 418)
Name: NF1946_low_45
Description: NF1946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1946_low_45 |
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Alignment Details
Target: chr2 (Bit Score: 263; Significance: 1e-146; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 1 - 291
Target Start/End: Original strand, 4635923 - 4636213
Alignment:
| Q |
1 |
taggtgcacgcacgctcatgatccctgggaatttcccattgggatgcagtgtaatttatttaacaaaatatgaaactacagataagagccaatacgactc |
100 |
Q |
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| T |
4635923 |
taggtgcacgcacgctcatgatccctgggaatttcccattgggatgcaatgtaatttacttaacaaaatatgaaactacagataagagccaatatgactc |
4636022 |
T |
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| Q |
101 |
agctggttgcttgaagtggttaaacgaatttgctgaattttataatcaggagctccaatatgagttacataggctaagaagaattcatcctcatgctact |
200 |
Q |
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| T |
4636023 |
agctggttgcttgaagtggttaaacgaatttgctgaattttataatcaggagctccaatatgagttacataggctaagaagaattcatcctcatgctact |
4636122 |
T |
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| Q |
201 |
atcatctatgctgattactacaatgctcttttgccattatatcataatcccacaaaatttggtaattaaaccctctcaacttctactataa |
291 |
Q |
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| T |
4636123 |
ataatctatgctgattactacaatgctcttttgccattatatcaaaatcccactaaatttggtaattcaaccctctcaacttctactataa |
4636213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 1 - 281
Target Start/End: Original strand, 4659080 - 4659360
Alignment:
| Q |
1 |
taggtgcacgcacgctcatgatccctgggaatttcccattgggatgcagtgtaatttatttaacaaaatatgaaactacagataagagccaatacgactc |
100 |
Q |
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|||| ||||||||||| ||| ||||||| ||||||||||||||||| |||| | | ||||||||| |||||||| || ||||||| |||||| ||||| |
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| T |
4659080 |
taggggcacgcacgcttatggtccctggaaatttcccattgggatgtagtgcagtccatttaacaacgtatgaaaccacggataagaaccaatatgactc |
4659179 |
T |
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| Q |
101 |
agctggttgcttgaagtggttaaacgaatttgctgaattttataatcaggagctccaatatgagttacataggctaagaagaattcatcctcatgctact |
200 |
Q |
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| T |
4659180 |
atttggttgcttgaagtggttaaatgaattttctgaattttataaccagaaactccaacatgagatacataggcttcgagtaattcatcctcatgctaat |
4659279 |
T |
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| Q |
201 |
atcatctatgctgattactacaatgctcttttgccattatatcataatcccacaaaatttggtaattaaaccctctcaact |
281 |
Q |
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| T |
4659280 |
atcatctatgctgattattacaatgcagcattgccattatatcgttatcccaaaaaatatggtaattcaactatctcaact |
4659360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 277 - 341
Target Start/End: Original strand, 4636941 - 4637004
Alignment:
| Q |
277 |
caacttctactataaattacctctcctctaaccttgaa-tttgctactttaacgtttagacacata |
341 |
Q |
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| T |
4636941 |
caacttctactataaattacctc--ctctaaccttgaaatttgctactttaacgtttagacacata |
4637004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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