View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1946_low_48 (Length: 409)

Name: NF1946_low_48
Description: NF1946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1946_low_48
NF1946_low_48
[»] chr2 (14 HSPs)
chr2 (19-403)||(18356828-18357213)
chr2 (19-379)||(42785390-42785763)
chr2 (157-379)||(44979681-44979903)
chr2 (157-379)||(25298162-25298385)
chr2 (157-360)||(11375869-11376073)
chr2 (157-379)||(19937026-19937258)
chr2 (157-355)||(17916766-17916961)
chr2 (185-379)||(9811339-9811536)
chr2 (157-368)||(44035265-44035486)
chr2 (157-279)||(34910362-34910485)
chr2 (185-368)||(16578595-16578791)
chr2 (185-379)||(36413567-36413774)
chr2 (281-379)||(5862667-5862765)
chr2 (230-271)||(41461144-41461185)
[»] chr4 (33 HSPs)
chr4 (33-368)||(5261746-5262087)
chr4 (33-355)||(51394691-51395021)
chr4 (157-379)||(30193886-30194110)
chr4 (157-379)||(6333265-6333493)
chr4 (157-379)||(40899990-40900217)
chr4 (157-367)||(48996045-48996256)
chr4 (157-385)||(23937428-23937658)
chr4 (157-368)||(32136652-32136869)
chr4 (173-379)||(52344686-52344888)
chr4 (157-271)||(10218746-10218860)
chr4 (157-367)||(40806723-40806940)
chr4 (157-385)||(43630520-43630749)
chr4 (157-380)||(8176508-8176727)
chr4 (185-379)||(36077521-36077718)
chr4 (157-262)||(31301309-31301416)
chr4 (185-271)||(29636841-29636929)
chr4 (185-271)||(42557792-42557880)
chr4 (185-379)||(50570885-50571092)
chr4 (281-379)||(23120293-23120391)
chr4 (185-271)||(29644052-29644140)
chr4 (321-379)||(13690924-13690982)
chr4 (292-355)||(31301268-31301331)
chr4 (76-148)||(31301433-31301501)
chr4 (312-379)||(32223386-32223453)
chr4 (230-274)||(23449968-23450012)
chr4 (281-372)||(4642377-4642468)
chr4 (320-379)||(41260221-41260280)
chr4 (230-271)||(15723949-15723990)
chr4 (230-271)||(18319545-18319586)
chr4 (230-271)||(18399095-18399136)
chr4 (230-271)||(23625875-23625916)
chr4 (230-271)||(48602503-48602544)
chr4 (239-271)||(54274008-54274040)
[»] chr8 (20 HSPs)
chr8 (157-379)||(10661102-10661325)
chr8 (157-366)||(44672750-44672960)
chr8 (167-379)||(36910252-36910465)
chr8 (157-367)||(14549184-14549404)
chr8 (157-368)||(18169929-18170143)
chr8 (159-271)||(6200755-6200867)
chr8 (56-379)||(33068214-33068534)
chr8 (157-368)||(3681893-3682096)
chr8 (157-368)||(18633495-18633711)
chr8 (157-262)||(30392152-30392257)
chr8 (157-237)||(36827698-36827778)
chr8 (185-379)||(3006499-3006706)
chr8 (220-368)||(5803210-5803369)
chr8 (312-360)||(30392106-30392154)
chr8 (230-271)||(12193442-12193483)
chr8 (230-271)||(12437870-12437911)
chr8 (239-288)||(38926419-38926468)
chr8 (308-379)||(6200916-6200987)
chr8 (230-271)||(9012816-9012857)
chr8 (230-271)||(40436499-40436540)
[»] chr1 (26 HSPs)
chr1 (157-379)||(51252326-51252549)
chr1 (157-379)||(33474396-33474618)
chr1 (157-368)||(29388992-29389209)
chr1 (157-368)||(1161654-1161865)
chr1 (157-374)||(44918501-44918718)
chr1 (157-379)||(16529400-16529634)
chr1 (157-354)||(33910682-33910891)
chr1 (157-368)||(45691756-45691973)
chr1 (157-379)||(39256542-39256770)
chr1 (157-271)||(24910959-24911074)
chr1 (157-379)||(42789520-42789737)
chr1 (157-271)||(32954110-32954224)
chr1 (166-379)||(11898959-11899181)
chr1 (185-271)||(8211346-8211434)
chr1 (220-271)||(5155297-5155348)
chr1 (220-271)||(20493816-20493867)
chr1 (276-379)||(32953987-32954090)
chr1 (281-379)||(36203479-36203577)
chr1 (231-271)||(26345033-26345073)
chr1 (230-269)||(6248141-6248180)
chr1 (228-271)||(40095393-40095436)
chr1 (221-271)||(33769940-33769990)
chr1 (230-271)||(11074373-11074414)
chr1 (230-271)||(17651819-17651860)
chr1 (230-271)||(34914191-34914232)
chr1 (46-147)||(42789404-42789507)
[»] chr7 (36 HSPs)
chr7 (157-366)||(32823566-32823774)
chr7 (56-360)||(31982805-31983111)
chr7 (164-379)||(18673109-18673324)
chr7 (157-368)||(27054642-27054855)
chr7 (88-366)||(1335280-1335570)
chr7 (157-367)||(13852269-13852485)
chr7 (157-368)||(24361405-24361616)
chr7 (157-379)||(31876547-31876763)
chr7 (157-285)||(24361199-24361327)
chr7 (33-212)||(10069327-10069505)
chr7 (157-284)||(22366500-22366627)
chr7 (185-379)||(11206295-11206492)
chr7 (157-237)||(43429265-43429345)
chr7 (33-126)||(36508538-36508631)
chr7 (157-368)||(48675071-48675289)
chr7 (157-212)||(5932766-5932821)
chr7 (240-368)||(47903207-47903336)
chr7 (243-368)||(7209266-7209392)
chr7 (157-255)||(7760183-7760281)
chr7 (185-271)||(12117662-12117750)
chr7 (185-271)||(47069736-47069824)
chr7 (220-271)||(3213186-3213237)
chr7 (19-114)||(7760357-7760452)
chr7 (220-350)||(36507924-36508055)
chr7 (185-271)||(10671888-10671976)
chr7 (185-379)||(47204384-47204591)
chr7 (227-356)||(2408942-2409077)
chr7 (220-378)||(11216104-11216263)
chr7 (313-379)||(45898128-45898194)
chr7 (157-212)||(47903356-47903411)
chr7 (312-385)||(5932638-5932711)
chr7 (320-380)||(10069141-10069201)
chr7 (262-351)||(43429152-43429242)
chr7 (230-271)||(10338790-10338831)
chr7 (276-379)||(10671769-10671873)
chr7 (276-379)||(47069617-47069721)
[»] chr5 (33 HSPs)
chr5 (19-271)||(35358999-35359258)
chr5 (157-367)||(42544619-42544830)
chr5 (157-368)||(333189-333400)
chr5 (157-379)||(12680981-12681198)
chr5 (19-368)||(17085012-17085360)
chr5 (157-367)||(2226789-2227006)
chr5 (157-354)||(12166074-12166273)
chr5 (157-351)||(36177006-36177211)
chr5 (164-360)||(38433665-38433868)
chr5 (157-271)||(9161046-9161159)
chr5 (157-379)||(30265700-30265925)
chr5 (220-379)||(27886390-27886550)
chr5 (164-368)||(9988769-9988978)
chr5 (157-271)||(32521126-32521242)
chr5 (167-271)||(36103527-36103631)
chr5 (220-379)||(30001960-30002120)
chr5 (157-288)||(10174126-10174249)
chr5 (185-379)||(667551-667748)
chr5 (185-271)||(15068528-15068616)
chr5 (220-271)||(8409058-8409109)
chr5 (220-271)||(11917473-11917524)
chr5 (220-271)||(701288-701339)
chr5 (157-204)||(23780863-23780910)
chr5 (157-204)||(23867816-23867863)
chr5 (313-379)||(23780773-23780839)
chr5 (313-379)||(23867726-23867792)
chr5 (230-277)||(36567773-36567820)
chr5 (262-368)||(701179-701287)
chr5 (230-271)||(1681183-1681224)
chr5 (230-271)||(27572019-27572060)
chr5 (230-271)||(41454931-41454972)
chr5 (276-379)||(11917354-11917458)
chr5 (276-379)||(15068409-15068513)
[»] chr3 (23 HSPs)
chr3 (157-368)||(6004299-6004510)
chr3 (157-385)||(32880243-32880473)
chr3 (34-379)||(9827569-9827912)
chr3 (172-368)||(50562496-50562693)
chr3 (157-366)||(21586752-21586964)
chr3 (185-379)||(34794543-34794739)
chr3 (157-366)||(35532063-35532257)
chr3 (185-379)||(51149594-51149791)
chr3 (185-379)||(35402137-35402339)
chr3 (158-271)||(43030489-43030601)
chr3 (157-367)||(39097906-39098115)
chr3 (185-271)||(4669574-4669662)
chr3 (185-271)||(33361021-33361109)
chr3 (220-271)||(10369279-10369330)
chr3 (157-208)||(27642074-27642125)
chr3 (157-208)||(33002643-33002694)
chr3 (244-328)||(48032847-48032931)
chr3 (230-271)||(51191767-51191808)
chr3 (221-271)||(20038447-20038497)
chr3 (230-271)||(38651973-38652014)
chr3 (230-270)||(17144704-17144744)
chr3 (310-374)||(35142853-35142917)
chr3 (276-379)||(43030365-43030469)
[»] scaffold0059 (1 HSPs)
scaffold0059 (157-379)||(69441-69674)
[»] chr6 (14 HSPs)
chr6 (157-379)||(35040127-35040344)
chr6 (157-379)||(15859674-15859905)
chr6 (157-368)||(10590810-10591026)
chr6 (157-367)||(10390932-10391144)
chr6 (157-368)||(10494281-10494504)
chr6 (157-379)||(5287814-5288038)
chr6 (185-379)||(12270505-12270702)
chr6 (157-271)||(13801883-13801997)
chr6 (157-368)||(25136731-25136948)
chr6 (161-368)||(33550279-33550496)
chr6 (220-379)||(5874116-5874286)
chr6 (229-271)||(13810842-13810884)
chr6 (262-355)||(13810885-13810979)
chr6 (230-271)||(28610680-28610721)
[»] scaffold0013 (2 HSPs)
scaffold0013 (157-368)||(128596-128818)
scaffold0013 (157-379)||(105978-106211)
[»] scaffold0308 (1 HSPs)
scaffold0308 (220-379)||(5857-6017)
[»] scaffold0029 (2 HSPs)
scaffold0029 (157-271)||(40481-40595)
scaffold0029 (320-379)||(40660-40719)


Alignment Details
Target: chr2 (Bit Score: 190; Significance: 1e-103; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 19 - 403
Target Start/End: Complemental strand, 18357213 - 18356828
Alignment:
Q  19 ggtatgttatgtcggtttatgacataggtaatacatgactatattaaagcaaaataatatattgttgatattgaaaataaaagcttaggatctatgcagt 118  Q
    |||||||| ||||||||||||||| |||||||||||||||||||||| |||||| |||||||||||| ||||||||||||||| |||||||||||| |||    
T  18357213 ggtatgttctgtcggtttatgacacaggtaatacatgactatattaaggcaaaacaatatattgttggtattgaaaataaaagtttaggatctatgtagt 18357114  T
Q  119 tcatgtatatatagtcatattttatcatgtnnnnnnnn---taaaatgtcctatgtttattttgtaacaagttggcaatattagagttaatgtaatannn 215  Q
    |||||||||    |||||||||||||||||           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||       
T  18357113 tcatgtata----gtcatattttatcatgtaaaaagcaaaataaaatgtcttatgtttattttgtaacaagttggcaatattagagttaatgtaatattt 18357018  T
Q  216 nnnn-atctcgcgataaaccgcatcaaccgaaccaatccaaaccgcattggtttggtgtgaatgacttttt-aaattcaatcgaaccaattcataccaca 313  Q
         ||||||||||||||||||||||| |||||||||||| ||||||||||||||| ||||||||||||| ||| | |||| ||||||| |||||| ||    
T  18357017 tttttatctcgcgataaaccgcatcaacagaaccaatccaagccgcattggtttggtttgaatgactttttaaaaattaatcaaaccaatccataccgca 18356918  T
Q  314 tgcttctttatctcgcgatttggatgacttttatgctcaaaatcgaatcaaaccgtaccacgaacattcctacaagaggtagctctcctc 403  Q
    ||||||||||||||||  ||| |||||||||||||||||||| |||| |||| || ||| ||||||| ||||||| | ||||||||||||    
T  18356917 tgcttctttatctcgcagtttagatgacttttatgctcaaaaccgaaccaaatcgcaccgcgaacatccctacaaaatgtagctctcctc 18356828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 19 - 379
Target Start/End: Original strand, 42785390 - 42785763
Alignment:
Q  19 ggtatgttatgtcggtttatgacataggtaatacatgactatattaaagcaaaataatatattgttgatattgaaaataaaagcttaggatctatgcagt 118  Q
    ||||||||||| |  ||||||||| | |||||||||||||||||||| ||| || |||||||||||| | ||||||||||||| |||| ||||||||| |    
T  42785390 ggtatgttatgccactttatgacacatgtaatacatgactatattaacgcataacaatatattgttggtgttgaaaataaaagtttagaatctatgcaat 42785489  T
Q  119 tcatgtata----tatagtcatattttatcatgtnnnnnnnn---taaaatgtcctatgtttattttgtaacaagttggcaatattagagttaatgtaat 211  Q
    ||||||||     |||||||||||||||| ||||           ||||||||| |||||||||||||||| || |||||||||||||||||||||||||    
T  42785490 tcatgtattattgtatagtcatattttattatgtaaacaacaaaataaaatgtcatatgtttattttgtaataatttggcaatattagagttaatgtaat 42785589  T
Q  212 annnnnnnatctcgcgataaaccgcatcaaccgaaccaatccaaaccgcattggtttggtgtg-----aatgactttttaaat-tcaatcgaaccaattc 305  Q
    |       |||||||||||||||||||||| ||||||||||||||||||||||||||||| ||     ||||| ||||||||  |||| ||||||||  |    
T  42785590 atttttttatctcgcgataaaccgcatcaatcgaaccaatccaaaccgcattggtttggtttggtttgaatgagtttttaaaaatcaagcgaaccaaacc 42785689  T
Q  306 ataccacatgcttctttatctcgcgatttggatgacttttatgctcaaaatcgaatcaaaccgtaccacgaaca 379  Q
    | ||| ||| ||| |||||||| |||||||||||||||||||||||||||||||| ||||||| ||| ||||||    
T  42785690 aaaccgcatccttttttatctcacgatttggatgacttttatgctcaaaatcgaaccaaaccgcaccgcgaaca 42785763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 157 - 379
Target Start/End: Original strand, 44979681 - 44979903
Alignment:
Q  157 taaaatgtcctatgtttattttgtaacaagttggcaatattagagttaatgtaatannnnnnnatctcgcgataaaccgcatcaaccgaaccaatccaaa 256  Q
    ||||||| |||||||||||||||||| |||||||||||||||||||||||||||||       ||||||||||||||||||  | |||||||||||||||    
T  44979681 taaaatgccctatgtttattttgtaataagttggcaatattagagttaatgtaatatttttt-atctcgcgataaaccgcacaagccgaaccaatccaaa 44979779  T
Q  257 ccgcattggtttggtgtgaatgacttttt-aaattcaatcgaaccaattcataccacatgcttctttatctcgcgatttggatgacttttatgctcaaaa 355  Q
    ||||||||||||||| || |||||||||| ||| |||| ||||||||  || ||| ||||||| ||||||||||| ||||||||||||||||||||||||    
T  44979780 ccgcattggtttggtttggatgactttttaaaaatcaaccgaaccaaaccaaaccgcatgcttttttatctcgcggtttggatgacttttatgctcaaaa 44979879  T
Q  356 tcgaatcaaaccgtaccacgaaca 379  Q
     |||| ||||||| ||| ||||||    
T  44979880 ccgaaccaaaccgcaccgcgaaca 44979903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 157 - 379
Target Start/End: Original strand, 25298162 - 25298385
Alignment:
Q  157 taaaatgtcctatgtttattttgtaacaagttggcaatattagagttaatgtaatannnnnnnatctcgcgataaaccgcatcaaccgaaccaatccaaa 256  Q
    |||||| |||||||||||||||| ||||||||||||||||||||||||||||||||       ||||||||||||||||||  |||||||||||||||||    
T  25298162 taaaatatcctatgtttattttgcaacaagttggcaatattagagttaatgtaatattttttcatctcgcgataaaccgcacaaaccgaaccaatccaaa 25298261  T
Q  257 ccgcattggtttggtgtgaatgactttttaaat-tcaatcgaaccaattcataccacatgcttctttatctcgcgatttggatgacttttatgctcaaaa 355  Q
    ||| ||| ||||||| || |||||||||||||  |||| ||||||||  |  |||  ||| || ||||||||||  ||| ||||||||||||||||||||    
T  25298262 ccgtattagtttggtttggatgactttttaaaaatcaaccgaaccaaaccgaaccgaatgtttttttatctcgcagtttcgatgacttttatgctcaaaa 25298361  T
Q  356 tcgaatcaaaccgtaccacgaaca 379  Q
     |||| ||||| | ||| ||||||    
T  25298362 ccgaaccaaactgcaccgcgaaca 25298385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 157 - 360
Target Start/End: Complemental strand, 11376073 - 11375869
Alignment:
Q  157 taaaatgtcctatgtttattttgtaacaagttggcaatattagagttaatgtaatannnnnnnatctcgcgataaaccgcatcaaccgaaccaatccaaa 256  Q
    ||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||       |||| |||||||||||||  || |||| ||||||||     
T  11376073 taaaatgtcttatgtttattttgtaacaagttgacaatattagagttaatgaaatatttttttatcttgcgataaaccgcacaaaacgaatcaatccaat 11375974  T
Q  257 ccgcattggtttggtgtgaatgacttttt-aaattcaatcgaaccaattcataccacatgcttctttatctcgcgatttggatgacttttatgctcaaaa 355  Q
    ||||||||||||||| || |||||||||| ||| |||| ||||||||  || ||  |||| || ||||||||||| ||||||||||||||||||| ||||    
T  11375973 ccgcattggtttggtttggatgactttttaaaaatcaaccgaaccaaaccaaactgcatgtttttttatctcgcggtttggatgacttttatgcttaaaa 11375874  T
Q  356 tcgaa 360  Q
     ||||    
T  11375873 ccgaa 11375869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 157 - 379
Target Start/End: Original strand, 19937026 - 19937258
Alignment:
Q  157 taaaatgtcctatgtttattttgtaacaagttggcaatattagagttaatgtaatannnnnnnatctcgcgataaaccgcatcaaccgaaccaatccaaa 256  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||       ||||| ||||||||||||   ||| ||||||||||||    
T  19937026 taaaatgtcttatgtttattttgtaacaagttggcaatattagagttaatgtaatatttttgtatctcacgataaaccgcacacaccaaaccaatccaaa 19937125  T
Q  257 ccgcattgg-----tttggtgtga-----atgacttttt-aaattcaatcgaaccaattcataccacatgcttctttatctcgcgatttggatgactttt 345  Q
    |||||||||     |||||| |||     |||||||||| ||| |||||||||||||  || ||| |||| || ||||||||||| ||||||||||||||    
T  19937126 ccgcattggtttgctttggtttgatttggatgactttttaaaaatcaatcgaaccaaaccaaacc-catgtttttttatctcgcggtttggatgactttt 19937224  T
Q  346 atgctcaaaatcgaatcaaaccgtaccacgaaca 379  Q
    |||||||||  | || ||||||| ||| ||||||    
T  19937225 atgctcaaatcctaaccaaaccgcaccgcgaaca 19937258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 157 - 355
Target Start/End: Original strand, 17916766 - 17916961
Alignment:
Q  157 taaaatgtcctatgtttattttgtaacaagttggcaatattagagttaatgtaata-nnnnnnnatctcgcgataaaccgcatcaaccgaaccaatccaa 255  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||        |||||||||||||| |||  ||||||||||||||||    
T  17916766 taaaatgtcctatgtttattttgtaacaagttggcaacattagagttaacgtaatattttttttatctcgcgataaactgcacaaaccgaaccaatccaa 17916865  T
Q  256 accgcattggtttggtgtgaatgacttttt-aaattcaatcgaaccaattcataccacatgcttctttatctcgcgatttggatgacttttatgctcaaa 354  Q
     ||||||||||||||     |||||||||| ||| |||| ||||||||  || ||| |||| || ||||||||    ||||||| |||||||||||||||    
T  17916866 gccgcattggtttgg-----atgactttttaaaaatcaaccgaaccaaaccaaaccgcatgtttttttatctcaaagtttggataacttttatgctcaaa 17916960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 185 - 379
Target Start/End: Complemental strand, 9811536 - 9811339
Alignment:
Q  185 agttggcaatattagagttaatgtaa--tannnnnnnatctcgcgataaaccgcatcaaccgaaccaatccaaaccgcattggtttggtgtgaatgactt 282  Q
    ||||||||||||||||||||||||||  |        |||||||||| |||||||||||| |||||||||||||||||||||||||||| || |||||||    
T  9811536 agttggcaatattagagttaatgtaaattttttatttatctcgcgattaaccgcatcaactgaaccaatccaaaccgcattggtttggtttggatgactt 9811437  T
Q  283 ttt-aaattcaatcgaaccaattcataccacatgcttctttatctcgcgatttggatgacttttatgctcaaaatcgaatcaaaccgtaccacgaaca 379  Q
    ||| ||| |||| ||||||||  || ||| |||| || ||| ||||||| ||||||||| | |||||||  ||| |||| ||||||| ||| ||||||    
T  9811436 tttaaaaatcaaccgaaccaaaccaaaccgcatgtttttttctctcgcggtttggatgattattatgcttgaaaccgaaccaaaccgcaccgcgaaca 9811339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 157 - 368
Target Start/End: Complemental strand, 44035486 - 44035265
Alignment:
Q  157 taaaatgtcctatgtttattttgtaacaagttggcaatattagagttaatgtaatannnnnnnatctcgcgataaaccgcatcaaccgaaccaatccaaa 256  Q
    |||||||||||| | |||||||||||||||||||||||||||||||||||||||||       ||||||||||||||| ||  ||||||||||||| |||    
T  44035486 taaaatgtcctacgattattttgtaacaagttggcaatattagagttaatgtaata-ttttttatctcgcgataaaccacacaaaccgaaccaatcaaaa 44035388  T
Q  257 ccgca---------ttggtttggtgtgaatgacttttt-aaattcaatcgaaccaattcataccacatgc-ttctttatctcgcgatttggatgactttt 345  Q
    || ||         |||||||||| || |||||||||| ||| |||| ||||||||  || ||| ||||| || ||||| | ||| ||||||||||||||    
T  44035387 ccccattggtttggttggtttggtttggatgactttttaaaaatcaaccgaaccaaaccaaaccgcatgctttttttattttgcggtttggatgactttt 44035288  T
Q  346 atgctcaaaatcgaatcaaaccg 368  Q
    |||||||||| |||| |||||||    
T  44035287 atgctcaaaaccgaaccaaaccg 44035265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 157 - 279
Target Start/End: Complemental strand, 34910485 - 34910362
Alignment:
Q  157 taaaatgtcctatgtttattttgtaacaagttggcaatattagagttaatgtaat-annnnnnnatctcgcgataaaccgcatcaaccgaaccaatccaa 255  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||         ||||||| |||||||| |  |||||||| |||||||    
T  34910485 taaaatgtcctatgtttattttgtaacaaattggcaatattagagttaatgtaatgttttttttatctcgcaataaaccgtacaaaccgaactaatccaa 34910386  T
Q  256 accgcattggtttggtgtgaatga 279  Q
     ||||||||||||||| |||||||    
T  34910385 gccgcattggtttggtttgaatga 34910362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 185 - 368
Target Start/End: Complemental strand, 16578791 - 16578595
Alignment:
Q  185 agttggcaatattagagttaatgtaatannnnnnn--atctcgcgataaaccgcatcaaccgaaccaatccaaaccgcattggtt----------tggtg 272  Q
    |||||||||||||||||||||||||||          |||||||||| |||||||||||| ||||||||||||||||||||||||          ||||     
T  16578791 agttggcaatattagagttaatgtaatttttttatttatctcgcgattaaccgcatcaactgaaccaatccaaaccgcattggtttggtttggtttggtt 16578692  T
Q  273 tgaatgacttttt-aaattcaatcgaaccaattcataccacatgcttctttatctcgcgatttggatgacttttatgctcaaaatcgaatcaaaccg 368  Q
    || |||||||||| ||| |||||||||||||  || ||| ||||||| ||| ||||||| ||||||||| | |||||||  ||| |||| |||||||    
T  16578691 tggatgactttttaaaaatcaatcgaaccaaaccaaaccgcatgcttttttctctcgcggtttggatgattattatgcttgaaaccgaaccaaaccg 16578595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 185 - 379
Target Start/End: Original strand, 36413567 - 36413774
Alignment:
Q  185 agttggcaatattagagttaatgtaatannnnnnn--atctcgcgataaaccgcatcaaccgaaccaatccaaaccgcattggtttggtgtga------- 275  Q
    |||||||||||||||||||||||||||          |||||||||| |||||||||||| |||||||||||||||||||||||||||| ||            
T  36413567 agttggcaatattagagttaatgtaatttttttatttatctcgcgattaaccgcatcaactgaaccaatccaaaccgcattggtttggtttggtttggtt 36413666  T
Q  276 ---atgacttttt-aaattcaatcgaaccaattcataccacatgcttctttatctcgcgatttggatgacttttatgctcaaaatcgaatcaaaccgtac 371  Q
       |||||||||| ||| |||| ||||||||  || ||| ||||||| ||| ||||||| ||||||||| | |||||||  ||| |||| ||||||| ||    
T  36413667 tggatgactttttaaaaatcaaccgaaccaaaccaaaccgcatgcttttttctctcgcggtttggatgattattatgcttgaaaccgaaccaaaccgcac 36413766  T
Q  372 cacgaaca 379  Q
    | ||||||    
T  36413767 cgcgaaca 36413774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 281 - 379
Target Start/End: Original strand, 5862667 - 5862765
Alignment:
Q  281 tttttaaattcaatcgaaccaattcataccacatgcttctttatctcgcgatttggatgacttttatgctcaaaatcgaatcaaaccgtaccacgaaca 379  Q
    |||| ||| |||| ||||||||  || ||| ||| ||| ||||| | ||||||| |||||||||||  ||||||||| |||||||||| ||| ||||||    
T  5862667 ttttaaaagtcaaccgaaccaaaccaaaccgcatacttttttattttgcgatttagatgacttttaccctcaaaatcaaatcaaaccgcaccgcgaaca 5862765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 271
Target Start/End: Complemental strand, 41461185 - 41461144
Alignment:
Q  230 aaaccgcatcaaccgaaccaatccaaaccgcattggtttggt 271  Q
    |||||||| |||||||  ||||||||||||||||||||||||    
T  41461185 aaaccgcaccaaccgattcaatccaaaccgcattggtttggt 41461144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 143; Significance: 5e-75; HSPs: 33)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 33 - 368
Target Start/End: Original strand, 5261746 - 5262087
Alignment:
Q  33 gtttatgacataggtaatacatgactatattaaagcaaaataatatattgttgatattgaaaataaaagcttaggatctatgcagttcatgtata----t 128  Q
    |||||||||| |||||||||||||||||||||||||| || |||||||||||| ||||||||||||||| ||| |||||||||| ||||||||||    |    
T  5261746 gtttatgacacaggtaatacatgactatattaaagcagaacaatatattgttggtattgaaaataaaagttta-gatctatgcaattcatgtataattgt 5261844  T
Q  129 atagtcatattttatcatgt---nnnnnnnntaaaatgtcctatgtttattttgtaacaagttggcaatattagagttaatgtaatannnnnnnatctcg 225  Q
    ||||||||||||||||||||           |||||||||| ||||||||||| |||||||||||||||||||||||||||||||||       ||||||    
T  5261845 atagtcatattttatcatgtaaacaacaaaataaaatgtccaatgtttattttttaacaagttggcaatattagagttaatgtaata-tttttaatctcg 5261943  T
Q  226 cgataaaccgcatcaaccgaaccaatccaaaccgcattggtttggtgtgaatgacttttt-aaattcaatcgaaccaattcataccacatgcttctttat 324  Q
    |||||||||||||||||||||||||||||| |   ||||||||||| || |||||||||| ||| ||||  |||| ||  || ||| ||||||| |||||    
T  5261944 cgataaaccgcatcaaccgaaccaatccaagctaaattggtttggtttggatgactttttaaaaatcaactgaactaaaccaaaccgcatgcttttttat 5262043  T
Q  325 ctcgcgatttggatgacttttatgctcaaaatcgaatcaaaccg 368  Q
    || ||| |||||||||||||||||||||||| ||||||||||||    
T  5262044 cttgcggtttggatgacttttatgctcaaaaccgaatcaaaccg 5262087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 33 - 355
Target Start/End: Complemental strand, 51395021 - 51394691
Alignment:
Q  33 gtttatgacataggtaatacatgactatattaaagcaaaataatatattgttgatattgaaaataaaagcttaggatctatgcagttcatgtata----t 128  Q
    |||||||||| | |||||| ||||||||||||||| | || |||| ||||||| ||||||||||||||  |||||||||||||| ||||||||||    |    
T  51395021 gtttatgacacatgtaatatatgactatattaaaggagaacaatacattgttggtattgaaaataaaaatttaggatctatgcaattcatgtataattgt 51394922  T
Q  129 atagtcatattttatcatgtnnnnnnnn---taaaatgtcctatgtttattttgtaacaagttggcaatattagagttaatgtaatannnnnnnatctcg 225  Q
    ||||||||||||||||||||           |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||       ||||||    
T  51394921 atagtcatattttatcatgtaaacagcaatataaaatgtcctatgtttattttgtaataagttggcaatattagaattaatgtaatatttttttatctcg 51394822  T
Q  226 cgataaaccgcatcaaccgaaccaatccaaaccgcattggtttggtgt-----gaatgactttttaaattcaatcgaaccaattcataccacatgcttct 320  Q
    ||||||||||||||||| ||||||||| ||  | |||||||||||| |     ||| |||||||||||   |||| |||| | ||| ||| ||||||| |    
T  51394821 cgataaaccgcatcaactgaaccaatcaaagtcacattggtttggtttggttggaaagactttttaaa---aatc-aaccgaatcaaaccgcatgctttt 51394726  T
Q  321 ttatctcgcgatttggatgacttttatgctcaaaa 355  Q
    |||||||||| ||||||||||||||||||||||||    
T  51394725 ttatctcgcggtttggatgacttttatgctcaaaa 51394691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 157 - 379
Target Start/End: Original strand, 30193886 - 30194110
Alignment:
Q  157 taaaatgtcctatgtttattttgtaacaagttggcaatattagagttaatgtaatannnnnnnatctcgcgataaaccgcatcaaccgaaccaatccaaa 256  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||| |||||||||||||||||    
T  30193886 taaaatgtcctatgtttattttgtaacaagttggcaatattagagttaatgtaatatttttttatctcgcgataaaccgcataaaccgaaccaatccaaa 30193985  T
Q  257 ccgcattggtttggtgtgaatgacttttt-aaattcaatcgaaccaattcataccacatgc-ttctttatctcgcgatttggatgacttttatgctcaaa 354  Q
    ||||||||||||||| || |||||||||| ||| |||| ||||||||  || ||| ||||| || |||||||| || |||| ||||||||| | || |||    
T  30193986 ccgcattggtttggtttggatgactttttaaaaatcaaccgaaccaaaccaaaccgcatgctttttttatctcacggtttgaatgacttttttacttaaa 30194085  T
Q  355 atcgaatcaaaccgtaccacgaaca 379  Q
      |||||||||||| ||| ||||||    
T  30194086 cccgaatcaaaccgcaccgcgaaca 30194110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 157 - 379
Target Start/End: Complemental strand, 6333493 - 6333265
Alignment:
Q  157 taaaatgtcctatgtttattttgtaacaagttggcaatattagagttaatgtaatannnnnnnatctcgcgataaaccgcatcaaccgaaccaatccaaa 256  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||        ||||||||||||||||||  |||||||||||||||||    
T  6333493 taaaatgtcctatgtttattttgtaacaagttggtaatattagagttaatgtaatttttttttatctcgcgataaaccgcacaaaccgaaccaatccaaa 6333394  T
Q  257 ccgcattggtttgg----------tgtgaatgactttttaaattcaatcgaaccaattcataccacatgcttctttatctcgcgatttggatgactttta 346  Q
    ||||||||||||||          | || |||||||||||||   |||| ||||||  || ||| ||||||| ||||||||||| ||||||||||||||     
T  6333393 ccgcattggtttggtttggtttgatttggatgactttttaaa---aatc-aaccaaaccaaaccgcatgcttttttatctcgcggtttggatgacttttt 6333298  T
Q  347 tgctcaaaatcgaatcaaaccgtaccacgaaca 379  Q
    |||||||||||||| ||||||| ||| ||||||    
T  6333297 tgctcaaaatcgaaccaaaccgcaccgcgaaca 6333265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 157 - 379
Target Start/End: Original strand, 40899990 - 40900217
Alignment:
Q  157 taaaatgtcctatgtttattttgtaacaagttggcaatattagagttaatgtaatannnnnnnatctcgcgataaaccgcatcaaccgaaccaatccaaa 256  Q
    ||||||| |||||||||||||||||| |||||||||||||||||||||||||||||       ||||||||||||||||||  |||| ||||||||||||    
T  40899990 taaaatgccctatgtttattttgtaataagttggcaatattagagttaatgtaatatttttt-atctcgcgataaaccgcacaaaccaaaccaatccaaa 40900088  T
Q  257 ccgcattggtttggtgtga-----atgactttttaaat-tcaatcgaaccaattcataccacatgcttctttatctcgcgatttggatgacttttatgct 350  Q
    ||||||||||||||| ||      |||||||||||||  ||||  |||||||  || ||| ||||||| ||||||||||  |||||||||||||||||||    
T  40900089 ccgcattggtttggtttggtttggatgactttttaaaaatcaactgaaccaaaccaaaccgcatgcttttttatctcgcagtttggatgacttttatgct 40900188  T
Q  351 caaaatcgaatcaaaccgtaccacgaaca 379  Q
    ||||| |||| ||||||| ||| ||||||    
T  40900189 caaaaccgaaccaaaccgcaccgcgaaca 40900217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 157 - 367
Target Start/End: Complemental strand, 48996256 - 48996045
Alignment:
Q  157 taaaatgtcctatgtttattttgtaacaagttggcaatattagagttaatgtaatannnnnnnatctcgcgataaaccgcatcaaccgaaccaatccaaa 256  Q
    |||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||       |||| |||||||||||||  || |||||||||||||     
T  48996256 taaaatttcctatgtttattttgtgacaagttgacaatattagagttaatgtaatatttttttatcttgcgataaaccgcacaaatcgaaccaatccaag 48996157  T
Q  257 ccgcattggtttggtgtgaatgacttttt-aaattcaatcgaaccaattcataccacatgcttctttatctcgcgatttggatgacttttatgctcaaaa 355  Q
    ||||||||||||||| || || ||||||| ||| |||| ||||||||  || ||||||||||| ||||| ||||| ||||||||| ||||||| | ||||    
T  48996156 ccgcattggtttggtttggataactttttaaaaatcaaccgaaccaaaccaaaccacatgcttttttatttcgcggtttggatgatttttatgattaaaa 48996057  T
Q  356 tcgaatcaaacc 367  Q
    ||||| ||||||    
T  48996056 tcgaaccaaacc 48996045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 157 - 385
Target Start/End: Original strand, 23937428 - 23937658
Alignment:
Q  157 taaaatgtcctatgtttattttgtaacaagttggcaatattagagttaatgtaatannnnnnna-tctcgcgataaaccgcatcaaccgaaccaatccaa 255  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||       | |||||| ||||||||||  ||||||||||||||||    
T  23937428 taaaatgtcctatgtttattttgtaacaagtttgcaatattagagttaatgtaatatttttttaatctcgcaataaaccgcacaaaccgaaccaatccaa 23937527  T
Q  256 accgcattggtttggtgtgaatgacttttt-aaattcaatcgaaccaattcataccacatgcttctttatctcgcgatttggatgacttttatgctcaaa 354  Q
     | ||||||||||||| || |||||||||| ||| |||| ||||||||  || ||| |||  || |||||||||   ||| |||||||||||||||||||    
T  23937528 gctgcattggtttggtttggatgactttttaaaaatcaaccgaaccaaaccaaaccgcatatttttttatctcgtagtttagatgacttttatgctcaaa 23937627  T
Q  355 atcgaatcaaaccgtaccacgaacattccta 385  Q
    |   |||||||||| ||||||||||| ||||    
T  23937628 actaaatcaaaccgcaccacgaacatcccta 23937658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 157 - 368
Target Start/End: Complemental strand, 32136869 - 32136652
Alignment:
Q  157 taaaatgtcctatgtttattttgtaacaagttggcaatattagagttaatgtaatannnnnnnatctcgcgataaaccgcatcaaccgaaccaatccaaa 256  Q
    |||||||||||||||||||||||| |||||||| ||||||||||||||||||||||       ||||| ||||||||||||  |||||||||||||||||    
T  32136869 taaaatgtcctatgtttattttgttacaagttgacaatattagagttaatgtaatatttttttatctcacgataaaccgcacaaaccgaaccaatccaaa 32136770  T
Q  257 ccgcattggtttggtgtga-----atgactttttaaat-tcaatcgaaccaattcataccacatgcttctttatctcgcgatttggatgacttttatgct 350  Q
    ||||||||||||||| ||      |||| ||||||||  |||||||||||||  || | | ||||||| ||||||||| | ||||| ||||||||||| |    
T  32136769 ccgcattggtttggtttggtttggatgaatttttaaaaatcaatcgaaccaaaccaaatcgcatgcttttttatctcgaggtttgggtgacttttatgtt 32136670  T
Q  351 caaaatcgaatcaaaccg 368  Q
    ||||| |||| |||||||    
T  32136669 caaaaccgaaccaaaccg 32136652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 173 - 379
Target Start/End: Complemental strand, 52344888 - 52344686
Alignment:
Q  173 tattttgtaacaagttggcaatattagagttaatgtaatannnnnnnatctcgcgataaaccgcatcaaccgaaccaatccaaaccgcattggtttggtg 272  Q
    ||||||||||||||||||||||||||||||||||| ||||       |||| | |||||||||||  |||||||||||||||| |||||||||||||||     
T  52344888 tattttgtaacaagttggcaatattagagttaatggaatatttttttatcttgtgataaaccgcacaaaccgaaccaatccaatccgcattggtttggtt 52344789  T
Q  273 tgaatgactttttaaat-tcaatcgaaccaattcataccacatgcttctttatctcgcgatttggatgacttttatgctcaaaatcgaatcaaaccgtac 371  Q
    || |||||||||||||  | |||||||||||     ||| ||||||| |||||||| || |||||||||||||||||||||||||| |  ||||||| ||    
T  52344788 tggatgactttttaaaaattaatcgaaccaa-----accgcatgcttttttatctcacggtttggatgacttttatgctcaaaatcaacccaaaccgcac 52344694  T
Q  372 cacgaaca 379  Q
    | ||||||    
T  52344693 cgcgaaca 52344686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 157 - 271
Target Start/End: Complemental strand, 10218860 - 10218746
Alignment:
Q  157 taaaatgtcctatgtttattttgtaacaagttggcaatattagagttaatgtaatannnnnnnatctcgcgataaaccgcatcaaccgaaccaatccaaa 256  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||| |  |||||||||||||||||    
T  10218860 taaaatgtcctatgtttattttgtaacaagttggcaatattagagttaatgtaatattttttcatctcgcgataaaccgtacaaaccgaaccaatccaaa 10218761  T
Q  257 ccgcattggtttggt 271  Q
    |||||||||||||||    
T  10218760 ccgcattggtttggt 10218746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 157 - 367
Target Start/End: Original strand, 40806723 - 40806940
Alignment:
Q  157 taaaatgtcctatgtttattttgtaacaagttggcaatattagagttaatgtaatannnnnnn-atctcgcgataaaccgcatcaaccgaaccaatccaa 255  Q
    |||||||||||||||||||| |||||||||||| ||||||||||||||||||||||        |||||| |||||||||||  ||||||||||||||||    
T  40806723 taaaatgtcctatgtttattatgtaacaagttgacaatattagagttaatgtaatattttttttatctcgtgataaaccgcacaaaccgaaccaatccaa 40806822  T
Q  256 accgcattggtttggtgtga-----atgactttttaaat-tcaatcgaaccaattcataccacatgcttctttatctcgcgatttggatgacttttatgc 349  Q
    || ||||||||||||| ||      |||| ||||||||  |||| ||||||||  || | | ||||||| ||||||||||| ||||||||||||||||||    
T  40806823 actgcattggtttggtttggtttggatgattttttaaaaatcaaccgaaccaaaccaaatcgcatgcttttttatctcgcggtttggatgacttttatgc 40806922  T
Q  350 tcaaaatcgaatcaaacc 367  Q
    |||||| |||| ||||||    
T  40806923 tcaaaaccgaaccaaacc 40806940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 157 - 385
Target Start/End: Complemental strand, 43630749 - 43630520
Alignment:
Q  157 taaaatgtcctatgtttattttgtaacaagttggcaatattagagttaatgtaatannnnnnnatctcgcgataaaccgcatcaaccgaaccaatccaaa 256  Q
    ||||||||||||||||||||| ||||||| |  ||||||||||||||||||||||        ||||| |||||||| |||  ||||||||||||||||     
T  43630749 taaaatgtcctatgtttatttcgtaacaaatatgcaatattagagttaatgtaatttttttttatctcacgataaactgcacaaaccgaaccaatccaag 43630650  T
Q  257 ccgcattggtttggtgtgaatgactttttaaat-tcaatcgaaccaattcataccacatgcttctttatctcgcgatttggatgacttttatgctcaaaa 355  Q
    ||||||||||||| | || |||||||||||||  |||| | ||||||  || ||| |||  || |||||||| || |||||||||||||||| |||||||    
T  43630649 ccgcattggtttgatttggatgactttttaaaaatcaaccaaaccaaaccaaaccgcatatttttttatctcacggtttggatgacttttatactcaaaa 43630550  T
Q  356 tcgaatcaaaccgtaccacgaacattccta 385  Q
    ||||| ||||||| ||| |||||| |||||    
T  43630549 tcgaaccaaaccgcaccgcgaacactccta 43630520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 157 - 380
Target Start/End: Original strand, 8176508 - 8176727
Alignment:
Q  157 taaaatgtcctatgtttattttgtaacaagttggcaatattagagttaatgtaatannnnnnnatctcgcgataaaccgcatcaaccgaaccaatccaaa 256  Q
    ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||       || || ||||||||||||  ||||||||||||||||     
T  8176508 taaaatgtcctgtgtttattttgtaacaagtgggcaatattagagttaatgtaatatttttttatttcacgataaaccgcacaaaccgaaccaatccaag 8176607  T
Q  257 ccgcattggtttggtgtgaatgactttttaaattcaatcgaaccaattcataccacatgcttctttatctcgcgatttggatgacttttatgctcaaaat 356  Q
    ||||||||||||||| |  |||||||||||||   |||| ||||||  || ||| ||||| | |||||||  |  |||| ||||||||||| ||||||||    
T  8176608 ccgcattggtttggtttagatgactttttaaa---aatc-aaccaaaccaaaccgcatgcgtttttatcttacagtttgaatgacttttatcctcaaaat 8176703  T
Q  357 cgaatcaaaccgtaccacgaacat 380  Q
     |||  ||||| |||| |||||||    
T  8176704 tgaactaaaccataccgcgaacat 8176727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 185 - 379
Target Start/End: Complemental strand, 36077718 - 36077521
Alignment:
Q  185 agttggcaatattagagttaatgtaatannnnnnn--atctcgcgataaaccgcatcaaccgaaccaatccaaaccgcattggtttggtgtgaatgactt 282  Q
    |||||||||||||||||||||||||||          |||||||||| |||||||||||| |||||||||||||||| ||||||||||| || |||||||    
T  36077718 agttggcaatattagagttaatgtaatttttttatttatctcgcgattaaccgcatcaactgaaccaatccaaaccgtattggtttggtttggatgactt 36077619  T
Q  283 ttt-aaattcaatcgaaccaattcataccacatgcttctttatctcgcgatttggatgacttttatgctcaaaatcgaatcaaaccgtaccacgaaca 379  Q
    ||| ||| |||| ||||||||  || ||| ||| ||| ||| ||||||| |||| |||| | |||||||  ||| |||| ||||||| ||| ||||||    
T  36077618 tttaaaaatcaaccgaaccaaaccaaaccgcatacttttttctctcgcggtttgaatgattattatgcttgaaaccgaaccaaaccgcaccgcgaaca 36077521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 157 - 262
Target Start/End: Complemental strand, 31301416 - 31301309
Alignment:
Q  157 taaaatgtcctatgtttattttgtaacaagttggcaatattagagttaatgtaa--tannnnnnnatctcgcgataaaccgcatcaaccgaaccaatcca 254  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||  |        ||||||||||||||||||  || |||||||| |||    
T  31301416 taaaacgtcctatgtttattttgtaacaagttggcaatattagagttaatggaatttttttttttatctcgcgataaaccgcactaatcgaaccaaacca 31301317  T
Q  255 aaccgcat 262  Q
    ||||||||    
T  31301316 aaccgcat 31301309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 185 - 271
Target Start/End: Complemental strand, 29636929 - 29636841
Alignment:
Q  185 agttggcaatattagagttaatgtaatannnnnnn--atctcgcgataaaccgcatcaaccgaaccaatccaaaccgcattggtttggt 271  Q
    |||||||||||||||||||||||||||          |||||||||| |||||||||||| ||||||||||||||||||||||||||||    
T  29636929 agttggcaatattagagttaatgtaatttttttatttatctcgcgattaaccgcatcaactgaaccaatccaaaccgcattggtttggt 29636841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 185 - 271
Target Start/End: Complemental strand, 42557880 - 42557792
Alignment:
Q  185 agttggcaatattagagttaatgtaatannnnnnn--atctcgcgataaaccgcatcaaccgaaccaatccaaaccgcattggtttggt 271  Q
    |||||||||||||||||||||||||||          |||||||||| |||||||||||| ||||||||||||||||||||||||||||    
T  42557880 agttggcaatattagagttaatgtaatttttttatttatctcgcgattaaccgcatcaactgaaccaatccaaaccgcattggtttggt 42557792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 185 - 379
Target Start/End: Original strand, 50570885 - 50571092
Alignment:
Q  185 agttggcaatattagagttaatgtaatannnnnnn--atctcgcgataaaccgcatcaaccgaaccaatccaaaccgcattggtttggtgtga------- 275  Q
    |||||||||||||||||||||||||||          |||||||||| |||||||||||| |||||||||||||||||||||||||||| ||            
T  50570885 agttggcaatattagagttaatgtaatttttttatttatctcgcgattaaccgcatcaactgaaccaatccaaaccgcattggtttggtttggtttggtt 50570984  T
Q  276 ---atgacttttt-aaattcaatcgaaccaattcataccacatgcttctttatctcgcgatttggatgacttttatgctcaaaatcgaatcaaaccgtac 371  Q
       |||||||||| ||| |||| ||||||||  || ||| ||||||| ||| ||||||| ||||||||| | |||||||  ||| |||| ||||||| ||    
T  50570985 tggatgactttttaaaaatcaaccgaaccaaaccaaaccgcatgcttttttctctcgcggtttggatgattattatgcttgaaaccgaaccaaaccgcac 50571084  T
Q  372 cacgaaca 379  Q
    | ||||||    
T  50571085 cgcgaaca 50571092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 281 - 379
Target Start/End: Original strand, 23120293 - 23120391
Alignment:
Q  281 tttttaaattcaatcgaaccaattcataccacatgcttctttatctcgcgatttggatgacttttatgctcaaaatcgaatcaaaccgtaccacgaaca 379  Q
    |||||||| |||||||||||||  || ||| ||||||| ||||||| ||| || ||||||||||||   ||||||||||||||||||| ||| ||||||    
T  23120293 tttttaaagtcaatcgaaccaaaccaaaccgcatgcttttttatcttgcggttcggatgacttttaccttcaaaatcgaatcaaaccgcaccgcgaaca 23120391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 185 - 271
Target Start/End: Original strand, 29644052 - 29644140
Alignment:
Q  185 agttggcaatattagagttaatgtaatannnnnnn--atctcgcgataaaccgcatcaaccgaaccaatccaaaccgcattggtttggt 271  Q
    |||||||||||||||||||||||||||          |||||||||| |||||||||||  ||||||||||||||||||||||||||||    
T  29644052 agttggcaatattagagttaatgtaatttttttatttatctcgcgattaaccgcatcaattgaaccaatccaaaccgcattggtttggt 29644140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 321 - 379
Target Start/End: Original strand, 13690924 - 13690982
Alignment:
Q  321 ttatctcgcgatttggatgacttttatgctcaaaatcgaatcaaaccgtaccacgaaca 379  Q
    |||||||||| ||||||||||||||||||| ||||||||| ||||||| | ||||||||    
T  13690924 ttatctcgcggtttggatgacttttatgcttaaaatcgaaccaaaccgcatcacgaaca 13690982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 292 - 355
Target Start/End: Complemental strand, 31301331 - 31301268
Alignment:
Q  292 aatcgaaccaattcataccacatgcttctttatctcgcgatttggatgacttttatgctcaaaa 355  Q
    |||||||||||  || ||| |||| || ||||||||||| ||||||||||||||||||||||||    
T  31301331 aatcgaaccaaaccaaaccgcatgtttttttatctcgcggtttggatgacttttatgctcaaaa 31301268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 76 - 148
Target Start/End: Complemental strand, 31301501 - 31301433
Alignment:
Q  76 tatattgttgatattgaaaataaaagcttaggatctatgcagttcatgtatatatagtcatattttatcatgt 148  Q
    |||||||||| ||||||||||||||| ||||||| |||||| |||| |    |||||||||||||||||||||    
T  31301501 tatattgttggtattgaaaataaaagtttaggatttatgcaattcagg----tatagtcatattttatcatgt 31301433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 312 - 379
Target Start/End: Original strand, 32223386 - 32223453
Alignment:
Q  312 catgcttctttatctcgcgatttggatgacttttatgctcaaaatcgaatcaaaccgtaccacgaaca 379  Q
    ||||||| |||||||  ||||||||||||||||||  ||||||| |||||||||||| ||| ||||||    
T  32223386 catgcttttttatctttcgatttggatgacttttaacctcaaaaccgaatcaaaccgcaccgcgaaca 32223453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 274
Target Start/End: Original strand, 23449968 - 23450012
Alignment:
Q  230 aaaccgcatcaaccgaaccaatccaaaccgcattggtttggtgtg 274  Q
    |||||||| ||| ||| ||||||||||||||||||||||||||||    
T  23449968 aaaccgcaacaatcgatccaatccaaaccgcattggtttggtgtg 23450012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 281 - 372
Target Start/End: Complemental strand, 4642468 - 4642377
Alignment:
Q  281 tttttaaattcaatcgaaccaattcataccacatgcttctttatctcgcgatttggatgacttttatgctcaaaatcgaatcaaaccgtacc 372  Q
    |||| ||| ||||||||||||| ||| || |||| ||| ||||||| ||| || |||| |||||||  ||||||| |||| |||||||||||    
T  4642468 ttttaaaagtcaatcgaaccaaatcaaactacatacttatttatcttgcggttcggataacttttagcctcaaaaccgaaccaaaccgtacc 4642377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 320 - 379
Target Start/End: Complemental strand, 41260280 - 41260221
Alignment:
Q  320 tttatctcgcgatttggatgacttttatgctcaaaatcgaatcaaaccgtaccacgaaca 379  Q
    ||||||||||| || |||||| |||||||||||||| |||| ||||||| ||||| ||||    
T  41260280 tttatctcgcggttaggatgatttttatgctcaaaaccgaaccaaaccgcaccacaaaca 41260221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 271
Target Start/End: Complemental strand, 15723990 - 15723949
Alignment:
Q  230 aaaccgcatcaaccgaaccaatccaaaccgcattggtttggt 271  Q
    |||||||||||||||| |||| |||||||||||| |||||||    
T  15723990 aaaccgcatcaaccgatccaacccaaaccgcattagtttggt 15723949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 271
Target Start/End: Original strand, 18319545 - 18319586
Alignment:
Q  230 aaaccgcatcaaccgaaccaatccaaaccgcattggtttggt 271  Q
    |||||||| ||||||| |||| ||||||||||||||||||||    
T  18319545 aaaccgcaccaaccgatccaacccaaaccgcattggtttggt 18319586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 271
Target Start/End: Complemental strand, 18399136 - 18399095
Alignment:
Q  230 aaaccgcatcaaccgaaccaatccaaaccgcattggtttggt 271  Q
    |||||||| ||||||| |||| ||||||||||||||||||||    
T  18399136 aaaccgcaccaaccgatccaacccaaaccgcattggtttggt 18399095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 271
Target Start/End: Original strand, 23625875 - 23625916
Alignment:
Q  230 aaaccgcatcaaccgaaccaatccaaaccgcattggtttggt 271  Q
    |||||||| ||||||| |||||||||||||||||| ||||||    
T  23625875 aaaccgcaccaaccgatccaatccaaaccgcattgatttggt 23625916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 271
Target Start/End: Original strand, 48602503 - 48602544
Alignment:
Q  230 aaaccgcatcaaccgaaccaatccaaaccgcattggtttggt 271  Q
    |||||||| ||||||| |||| ||||||||||||||||||||    
T  48602503 aaaccgcaccaaccgatccaacccaaaccgcattggtttggt 48602544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 239 - 271
Target Start/End: Original strand, 54274008 - 54274040
Alignment:
Q  239 caaccgaaccaatccaaaccgcattggtttggt 271  Q
    |||||||||||||||||||| ||||||||||||    
T  54274008 caaccgaaccaatccaaaccacattggtttggt 54274040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 119; Significance: 1e-60; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 157 - 379
Target Start/End: Complemental strand, 10661325 - 10661102
Alignment:
Q  157 taaaatgtcctatgtttattttgtaacaagttggcaatattagagttaatgtaatannnnnnnatctcgcgataaaccgcatcaaccgaaccaatccaaa 256  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||       ||||||||||||| ||||  |||||||||||| ||||    
T  10661325 taaaatgtcctatgtttattttgtaacaagttggcaatattacagttaatgtaatatttttttatctcgcgataaatcgcacaaaccgaaccaatacaaa 10661226  T
Q  257 ccgcattggtttggtgtgaatgacttttt-aaattcaatcgaaccaattcataccacatgcttctttatctcgcgatttggatgacttttatgctcaaaa 355  Q
    ||||||||||||||| || |||||||||| ||| |||| ||||||||  || ||| ||||||| ||||||||||| ||||||||||||||||||||||||    
T  10661225 ccgcattggtttggtttggatgactttttaaaaatcaaccgaaccaaaccaaaccgcatgcttttttatctcgcggtttggatgacttttatgctcaaaa 10661126  T
Q  356 tcgaatcaaaccgtaccacgaaca 379  Q
     |||| ||||||| ||| ||||||    
T  10661125 ccgaaccaaaccgcaccgcgaaca 10661102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 157 - 366
Target Start/End: Complemental strand, 44672960 - 44672750
Alignment:
Q  157 taaaatgtcctatgtttattttgtaacaagttggcaatattagagttaatgtaatannnnnnnatctcgcgataaaccgcatcaaccgaaccaatccaaa 256  Q
    |||||| || ||||||||||||| ||||||||||||||||||||||||||||||||       ||||||||||||||| ||  || ||||||||||||||    
T  44672960 taaaatatcttatgtttattttgcaacaagttggcaatattagagttaatgtaatattttttcatctcgcgataaaccacacaaatcgaaccaatccaaa 44672861  T
Q  257 ccgcattggtttggtgtgaatgactttttaaat-tcaatcgaaccaattcataccacatgcttctttatctcgcgatttggatgacttttatgctcaaaa 355  Q
    ||||||||||||||| || |||||||||||||  |||||||||||||  || ||| |||| || ||||||||||||||||||||||||||||||||||||    
T  44672860 ccgcattggtttggtttggatgactttttaaaaatcaatcgaaccaaaccaaaccgcatgtttttttatctcgcgatttggatgacttttatgctcaaaa 44672761  T
Q  356 tcgaatcaaac 366  Q
     |||| |||||    
T  44672760 ccgaaccaaac 44672750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 167 - 379
Target Start/End: Original strand, 36910252 - 36910465
Alignment:
Q  167 tatgtttattttgtaacaagttggcaatattagagttaatgtaatannnnnnna-tctcgcgataaaccgcatcaaccgaaccaatccaaaccgcattgg 265  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||       | ||||||||||||| |||  |||||||||||||||| |||| ||||    
T  36910252 tatgtctattttgtaacaagttggcaatattagagttaatgtaatatttttttaatctcgcgataaactgcacaaaccgaaccaatccaagccgc-ttgg 36910350  T
Q  266 tttggtgtgaatgactttttaaat-tcaatcgaaccaattcataccacatgcttctttatctcgcgatttggatgacttttatgctcaaaatcgaatcaa 364  Q
    |||||| || |||||||||||||  |||| ||||||||   | ||| ||||||| ||||||||||| ||| |||||||||||||||||||||| || |||    
T  36910351 tttggtttggatgactttttaaaaatcaaccgaaccaaactaaaccgcatgcttttttatctcgcggttttgatgacttttatgctcaaaatcaaaccaa 36910450  T
Q  365 accgtaccacgaaca 379  Q
    |||| ||| ||||||    
T  36910451 accgcaccgcgaaca 36910465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 157 - 367
Target Start/End: Complemental strand, 14549404 - 14549184
Alignment:
Q  157 taaaatgtcctatgtttattttgtaacaagttggcaatattagagttaatgtaatannnnnnnatctcgcgataaaccgcatcaaccgaaccaatccaaa 256  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||  |||||||||||||||||    
T  14549404 taaaatgtcctatgtttattttgtaacaagttggcaatattagagttaatgtaata-ttttttatctcgcgataaaccgcacaaaccgaaccaatccaaa 14549306  T
Q  257 ccgca----------ttggtttggtgtgaatgacttttt-aaattcaatcgaaccaattcataccacatgcttctttatctcgcgatttggatgactttt 345  Q
    |||||          |||||||||| || |||||||||| ||| |||| |||| |||  || ||| |||  || |||||||| || ||||||||||||||    
T  14549305 ccgcattggtttggtttggtttggtttggatgactttttaaaaatcaaccgaatcaaaccaaaccgcatatttttttatctcacggtttggatgactttt 14549206  T
Q  346 atgctcaaaatcgaatcaaacc 367  Q
    |||||||||| |||||||||||    
T  14549205 atgctcaaaaccgaatcaaacc 14549184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 157 - 368
Target Start/End: Original strand, 18169929 - 18170143
Alignment:
Q  157 taaaatgtcctatgtttattttgtaacaagttggcaatattagagttaatgtaatannnnnnn--atctcgcgataaaccgcatcaaccgaaccaatcca 254  Q
    ||||||||| ||||||||||||||||||||| ||||| |||||||||||||||||          ||||||||||||||||||  |||||||||||||||    
T  18169929 taaaatgtcttatgtttattttgtaacaagtaggcaacattagagttaatgtaatttttttttttatctcgcgataaaccgcacaaaccgaaccaatcca 18170028  T
Q  255 aaccgcattggtttggtgtg-----aatgacttttt-aaattcaatcgaaccaattcataccacatgcttctttatctcgcgatttggatgacttttatg 348  Q
    ||||||||||||||||| ||      |||||||||| ||| |||| ||||||||     ||| || |||| ||||||||||| ||| |||||||||||||    
T  18170029 aaccgcattggtttggtttggttttgatgactttttaaaactcaaccgaaccaa-----accgcacgcttttttatctcgcggtttagatgacttttatg 18170123  T
Q  349 ctcaaaatcgaatcaaaccg 368  Q
     |||||| |||| |||||||    
T  18170124 ttcaaaaccgaaccaaaccg 18170143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 159 - 271
Target Start/End: Original strand, 6200755 - 6200867
Alignment:
Q  159 aaatgtcctatgtttattttgtaacaagttggcaatattagagttaatgtaatannnnnnnatctcgcgataaaccgcatcaaccgaaccaatccaaacc 258  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||       |||| |||||||| ||||   ||||||||||||||||||    
T  6200755 aaatgtcctatgtttattttgaaacaagttggcaatattagagttaatgtaatatttttttatcttgcgataaagcgcacataccgaaccaatccaaacc 6200854  T
Q  259 gcattggtttggt 271  Q
    |||||| ||||||    
T  6200855 gcattgctttggt 6200867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 56 - 379
Target Start/End: Complemental strand, 33068534 - 33068214
Alignment:
Q  56 actatattaaagcaaaataatatattgttgatattgaaaataaaagcttaggatctatgcagttcatgtatatatagtcatattttatcatgtnnnnnnn 155  Q
    |||||||||| ||| || |||||||||||| ||||||||||||||  |||||||||||||| ||||||||||     ||||||||||||||||           
T  33068534 actatattaaggcataacaatatattgttggtattgaaaataaaaatttaggatctatgcaattcatgtataa----tcatattttatcatgttaacagc 33068439  T
Q  156 n---taaaatgtcctatgtttattttgtaacaagttggcaatattagagttaatgtaatannnnnnn-atctcgcgataaaccgcatcaaccgaaccaat 251  Q
        ||||||||| ||| ||||| |||||| |||||||||||||||||||||||||||||        ||||||| || |||||||         | |||    
T  33068438 aaaataaaatgtcatatttttatcttgtaataagttggcaatattagagttaatgtaatattttttttatctcgcaattaaccgca---------caaat 33068348  T
Q  252 ccaaaccgcattggtttg-----gtgtgaatgactttttaaat-tcaatcgaaccaattcataccacatgcttctttatctcgcgatttggatgactttt 345  Q
    |||| | |||||||||||     || || |||||||||||||  ||||  |||||||  || ||| ||||||| ||||||| ||| ||||||||||||||    
T  33068347 ccaacctgcattggtttgatttggtttggatgactttttaaaaatcaactgaaccaaaccaaaccgcatgcttttttatcttgcggtttggatgactttt 33068248  T
Q  346 atgctcaaaatcgaatcaaaccgtaccacgaaca 379  Q
    |||||||||| |||| ||||||| ||||||||||    
T  33068247 atgctcaaaaccgaaccaaaccgcaccacgaaca 33068214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 157 - 368
Target Start/End: Complemental strand, 3682096 - 3681893
Alignment:
Q  157 taaaatgtcctatgtttattttgtaacaagttggcaatattagagttaatgtaatannnnnnnatctcgcgataaaccgcatcaaccgaaccaatccaaa 256  Q
    |||||||| |||||||||||||||||||||||| |||||||| ||||||||||||         |||||||||||||||||  || |||||||||||||     
T  3682096 taaaatgttctatgtttattttgtaacaagttgacaatattaaagttaatgtaat---tttttttctcgcgataaaccgcacaaatcgaaccaatccaag 3682000  T
Q  257 ccgcattggtttggtgtgaatgactttttaaattcaatcgaaccaattcataccacatgcttctttatctcgcgatttggatgacttttatgctcaaaat 356  Q
    |||||||||||| || || |||||||||||||   | || ||||||  || ||| |||| || ||||||||||| ||||||| ||||||||  ||||||     
T  3681999 ccgcattggtttagtttggatgactttttaaa---agtc-aaccaaaccaaaccgcatg-ttttttatctcgcggtttggataacttttatattcaaaac 3681905  T
Q  357 cgaatcaaaccg 368  Q
    |||| |||||||    
T  3681904 cgaaccaaaccg 3681893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 157 - 368
Target Start/End: Original strand, 18633495 - 18633711
Alignment:
Q  157 taaaatgtcctatgtttattttgtaacaagttggcaatattagagttaatgtaa---tannnnnnnatctcgcgataaaccgcatcaaccgaaccaatcc 253  Q
    ||||||||| ||||||||||||||||||||| ||||| ||||||||||||||||   |        ||||||||||||||||||  ||||||||||||||    
T  18633495 taaaatgtcttatgtttattttgtaacaagtaggcaacattagagttaatgtaattttttttttttatctcgcgataaaccgcacaaaccgaaccaatcc 18633594  T
Q  254 aaaccgca------ttggtttggtgtgaatgacttttt-aaattcaatcgaaccaattcataccacatgcttctttatctcgcgatttggatgactttta 346  Q
    ||||||||      |||||||||| |  |||||||||| ||| |||| ||||||||     ||| || |||| ||||||||||| ||| |||||||||||    
T  18633595 aaaccgcattggttttggtttggttttgatgactttttaaaactcaaccgaaccaa-----accgcacgcttttttatctcgcggtttagatgactttta 18633689  T
Q  347 tgctcaaaatcgaatcaaaccg 368  Q
    || |||||| |||| |||||||    
T  18633690 tgttcaaaaccgaaccaaaccg 18633711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 157 - 262
Target Start/End: Complemental strand, 30392257 - 30392152
Alignment:
Q  157 taaaatgtcctatgtttattttgtaacaagttggcaatattagagttaatgtaatannnnnnnatctcgcgataaaccgcatcaaccgaaccaatccaaa 256  Q
    |||||||  |||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||  | || |||||| |||||    
T  30392257 taaaatgctctatgtttattttgtaacaagttggcaatattagagttaatgtaatatttttttatctcgcgataaaccgcacaagccaaaccaaaccaaa 30392158  T
Q  257 ccgcat 262  Q
    ||||||    
T  30392157 ccgcat 30392152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 157 - 237
Target Start/End: Original strand, 36827698 - 36827778
Alignment:
Q  157 taaaatgtcctatgtttattttgtaacaagttggcaatattagagttaatgtaatannnnnnnatctcgcgataaaccgca 237  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||       ||||||||||||||||||    
T  36827698 taaaatgtcctatgtttattttgtagcaagttggcaatattagagttaatgtaatatttttttatctcgcgataaaccgca 36827778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 185 - 379
Target Start/End: Original strand, 3006499 - 3006706
Alignment:
Q  185 agttggcaatattagagttaatgtaatannnnnnn--atctcgcgataaaccgcatcaaccgaaccaatccaaaccgcattggtttggtgtga------- 275  Q
    |||||||||||||||||||||||||||          |||||||||| |||||||||||| |||||||||||||||||||||||||||| ||            
T  3006499 agttggcaatattagagttaatgtaatttttttatttatctcgcgattaaccgcatcaactgaaccaatccaaaccgcattggtttggtttggtttggtt 3006598  T
Q  276 ---atgacttttt-aaattcaatcgaaccaattcataccacatgcttctttatctcgcgatttggatgacttttatgctcaaaatcgaatcaaaccgtac 371  Q
       |||||||||| ||| |||| ||||||||  || ||| ||||||| ||| ||||||| ||||||||| | |||||||  ||| |||| ||||||| ||    
T  3006599 tggatgactttttaaaaatcaaccgaaccaaaccaaaccgcatgcttttttctctcgcggtttggatgattattatgcttgaaaccgaaccaaaccgcac 3006698  T
Q  372 cacgaaca 379  Q
    | ||||||    
T  3006699 cgcgaaca 3006706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 220 - 368
Target Start/End: Original strand, 5803210 - 5803369
Alignment:
Q  220 atctcgcgataaaccgcatcaaccgaaccaatccaaaccgca----------ttggtttggtgtgaatgacttttt-aaattcaatcgaaccaattcata 308  Q
    |||||||||| |||||||||||| ||||||||||||||||||          |||||||||| || |||||||||| ||| |||| ||||||||  || |    
T  5803210 atctcgcgattaaccgcatcaactgaaccaatccaaaccgcattggtttggtttggtttggtttggatgactttttaaaaatcaaccgaaccaaaccaaa 5803309  T
Q  309 ccacatgcttctttatctcgcgatttggatgacttttatgctcaaaatcgaatcaaaccg 368  Q
    || ||||||| ||| ||||||| ||||||||| | |||||||  |||||||| |||||||    
T  5803310 ccgcatgcttttttctctcgcggtttggatgattattatgcttgaaatcgaaccaaaccg 5803369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 312 - 360
Target Start/End: Complemental strand, 30392154 - 30392106
Alignment:
Q  312 catgcttctttatctcgcgatttggatgacttttatgctcaaaatcgaa 360  Q
    ||||||| ||||||||||| |||||||||||||||||||||||| ||||    
T  30392154 catgcttttttatctcgcggtttggatgacttttatgctcaaaaccgaa 30392106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 230 - 271
Target Start/End: Original strand, 12193442 - 12193483
Alignment:
Q  230 aaaccgcatcaaccgaaccaatccaaaccgcattggtttggt 271  Q
    |||||||||||||||| |||||||||||||||||| ||||||    
T  12193442 aaaccgcatcaaccgatccaatccaaaccgcattgatttggt 12193483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 230 - 271
Target Start/End: Original strand, 12437870 - 12437911
Alignment:
Q  230 aaaccgcatcaaccgaaccaatccaaaccgcattggtttggt 271  Q
    |||||||||||||||| |||||||||||||||||| ||||||    
T  12437870 aaaccgcatcaaccgatccaatccaaaccgcattgatttggt 12437911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 239 - 288
Target Start/End: Original strand, 38926419 - 38926468
Alignment:
Q  239 caaccgaaccaatccaaaccgcattggtttggtgtgaatgactttttaaa 288  Q
    |||||||||||||||||||| ||||||||||||   ||||||||||||||    
T  38926419 caaccgaaccaatccaaaccacattggtttggttcaaatgactttttaaa 38926468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 308 - 379
Target Start/End: Original strand, 6200916 - 6200987
Alignment:
Q  308 accacatgcttctttatctcgcgatttggatgacttttatgctcaaaatcgaatcaaaccgtaccacgaaca 379  Q
    ||| |||| || ||||||||||  ||||||| |||||||||||||||| |||| ||| ||||||| ||||||    
T  6200916 accgcatgtttttttatctcgcagtttggattacttttatgctcaaaaccgaaccaagccgtaccgcgaaca 6200987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 271
Target Start/End: Original strand, 9012816 - 9012857
Alignment:
Q  230 aaaccgcatcaaccgaaccaatccaaaccgcattggtttggt 271  Q
    |||||||| ||||||| |||| ||||||||||||||||||||    
T  9012816 aaaccgcaccaaccgatccaacccaaaccgcattggtttggt 9012857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 271
Target Start/End: Complemental strand, 40436540 - 40436499
Alignment:
Q  230 aaaccgcatcaaccgaaccaatccaaaccgcattggtttggt 271  Q
    |||||||| ||||||| |||| ||||||||||||||||||||    
T  40436540 aaaccgcaccaaccgatccaacccaaaccgcattggtttggt 40436499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 119; Significance: 1e-60; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 157 - 379
Target Start/End: Original strand, 51252326 - 51252549
Alignment:
Q  157 taaaatgtcctatgtttattttgtaacaagttggcaatattagagttaatgtaatannnnnnnatctcgcgataaaccgcatcaaccgaaccaatccaaa 256  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||| |||||||||||  |||||||||||| |||     
T  51252326 taaaatgtcctatgtttattttgtaacaagttggcaatattagagttaatgtaatatctttttatctcgtgataaaccgcacaaaccgaaccaattcaag 51252425  T
Q  257 ccgcattggtttggtgtgaatgacttttt-aaattcaatcgaaccaattcataccacatgcttctttatctcgcgatttggatgacttttatgctcaaaa 355  Q
    |||||||| |||||| || |||||||||| ||| |||| | ||||||  || ||||||||||| ||||||||||| ||||||||||||||||||||||||    
T  51252426 ccgcattgatttggtttggatgactttttaaaaatcaacccaaccaaaccaaaccacatgcttttttatctcgcggtttggatgacttttatgctcaaaa 51252525  T
Q  356 tcgaatcaaaccgtaccacgaaca 379  Q
    ||||| ||||||| ||| ||||||    
T  51252526 tcgaaccaaaccgcaccgcgaaca 51252549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 157 - 379
Target Start/End: Complemental strand, 33474618 - 33474396
Alignment:
Q  157 taaaatgtcctatgtttattttgtaacaagttggcaatattagagttaatgtaatannnnnnnatctcgcgataaaccgcatcaaccgaaccaatccaaa 256  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||  |||||||||||||||||    
T  33474618 taaaatgttctatgtttattttgtaacaagttggcaatattagagttaatgtaat-tttttttatctcgcgataaaccgcacaaaccgaaccaatccaaa 33474520  T
Q  257 ccgcattggtttggtgtgaatgac-tttttaaattcaatcgaaccaattcataccacatgcttctttatctcgcgatttggatgacttttatgctcaaaa 355  Q
    ||||||||||||||| || ||||| |||||||| |||| ||||||||   | ||| ||||||| |||||||| |  ||||||||| |||| |||||||||    
T  33474519 ccgcattggtttggtttggatgacttttttaaaatcaaccgaaccaaactaaaccgcatgcttttttatctcacagtttggatgatttttttgctcaaaa 33474420  T
Q  356 tcgaatcaaaccgtaccacgaaca 379  Q
    ||||| ||||  | ||||||||||    
T  33474419 tcgaaccaaatagcaccacgaaca 33474396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 157 - 368
Target Start/End: Complemental strand, 29389209 - 29388992
Alignment:
Q  157 taaaatgtcctatgtttattttgtaacaagttggcaatattagagttaatgtaatannnnnnnatctcgcgataaaccgcatcaaccgaaccaatccaaa 256  Q
    ||||||||||||||||||||||||||||| ||||||||||||||  ||||||||||       |||| ||||||||| |||| |||||||||||||||||    
T  29389209 taaaatgtcctatgtttattttgtaacaatttggcaatattagaactaatgtaatatttttttatcttgcgataaactgcataaaccgaaccaatccaaa 29389110  T
Q  257 ccgcattg-----gtttggtgtgaatgactttttaaat-tcaatcgaaccaattcataccacatgcttctttatctcgcgatttggatgacttttatgct 350  Q
    ||||||||     ||||||| || |||||||||||||  |||||| |||||| ||| ||| ||||||| |||||||| || |||||||||||||| ||||    
T  29389109 ccgcattgatttggtttggtttggatgactttttaaaaatcaatcaaaccaaatcaaaccgcatgcttttttatctcacggtttggatgacttttttgct 29389010  T
Q  351 caaaatcgaatcaaaccg 368  Q
    |||||||||| |||||||    
T  29389009 caaaatcgaaccaaaccg 29388992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 157 - 368
Target Start/End: Original strand, 1161654 - 1161865
Alignment:
Q  157 taaaatgtcctatgtttattttgtaacaagttggcaatattagagttaatgtaatannnnnnnatctcgcgataaaccgcatcaaccgaaccaatccaaa 256  Q
    ||||||||| |||||||||||||||| |||||||||||||||||||||||||||||       ||||| ||||||||||||  ||||||||||||| ||     
T  1161654 taaaatgtcatatgtttattttgtaataagttggcaatattagagttaatgtaatatttttt-atctcacgataaaccgcacaaaccgaaccaatcgaag 1161752  T
Q  257 ccgcattggtttggtgtgaatgacttttt-aaattcaatcgaaccaattcataccacatgcttctttatctcgcgatttggatgacttttatgctcaaaa 355  Q
    | ||||||||||||| || |||||||||| ||| |||| | ||||||  || ||||||||||| ||||||||||| || ||||||||||| |||||||||    
T  1161753 ctgcattggtttggtttggatgactttttaaaaatcaaccaaaccaaaccaaaccacatgcttttttatctcgcggttcggatgacttttctgctcaaaa 1161852  T
Q  356 tcgaatcaaaccg 368  Q
     |||| |||||||    
T  1161853 ccgaaccaaaccg 1161865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 157 - 374
Target Start/End: Complemental strand, 44918718 - 44918501
Alignment:
Q  157 taaaatgtcctatgtttattttgtaacaagttggcaatattagagttaatgtaatannnnnnnatctcgcgataaaccgcatcaaccgaaccaatccaaa 256  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||| |||||||||||  |||||||||||||||||    
T  44918718 taaaatgtcctatgtttattttgtaacaagttggcaatattagagttaatgtaata-ttttttatctcgtgataaaccgcacaaaccgaaccaatccaaa 44918620  T
Q  257 ccgcattggtttg-----gtgtgaatgacttttt-aaattcaatcgaaccaattcataccacatgcttctttatctcgcgatttggatgacttttatgct 350  Q
    ||| |||||||||     || || |||||||||| ||| |||| ||||||||     ||| ||||||| ||||||| ||  ||||| |||||||||||||    
T  44918619 ccgtattggtttggtttcgtttggatgactttttaaaaatcaaccgaaccaa-----accgcatgcttttttatcttgcagtttgggtgacttttatgct 44918525  T
Q  351 caaaatcgaatcaaaccgtaccac 374  Q
    |||||||||| ||||||| |||||    
T  44918524 caaaatcgaaccaaaccgcaccac 44918501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 157 - 379
Target Start/End: Original strand, 16529400 - 16529634
Alignment:
Q  157 taaaatgtcctatgtttattttgtaacaagttggcaatattagagttaatgtaatannnnnnn-atctcgcgataaaccgcatcaaccgaaccaatccaa 255  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||| |||        |||| |||||||||||||  |||||||||||| |||    
T  16529400 taaaatgtcctatgtttattttgtaacaagttgacaatattagagttaatgtcatattttttttatcttgcgataaaccgcacaaaccgaaccaattcaa 16529499  T
Q  256 accgcattggtttggtgtg----------aatgactttttaaat-tcaatcgaaccaattcataccacatgcttctttatctcgcgatttggatgacttt 344  Q
     ||||||||||||||| ||          ||||||||||||||  |||| ||||||||  || ||  ||||||| ||||||||||  |||||||||||||    
T  16529500 gccgcattggtttggtttggtttggtttgaatgactttttaaaaatcaaccgaaccaaaccaaacggcatgcttttttatctcgcagtttggatgacttt 16529599  T
Q  345 tatgctcaaaatcgaatcaaaccgtaccacgaaca 379  Q
    ||||||||||| |||| ||||||| ||| ||||||    
T  16529600 tatgctcaaaaccgaaccaaaccgcaccgcgaaca 16529634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 157 - 354
Target Start/End: Original strand, 33910682 - 33910891
Alignment:
Q  157 taaaatgtcctatgtttattttgtaacaagttggcaatattagagttaatgtaatannnnnnnatctcgcgataaaccgcatcaaccgaaccaatccaaa 256  Q
    ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||       |||||  |||||||||||| ||||||||||||| |||    
T  33910682 taaaatgtcctatgtttattttgtaacaagttggcaataatagggttaatgtaatatttttttatctcatgataaaccgcataaaccgaaccaatcaaaa 33910781  T
Q  257 ccgcattggttt-----------ggtgtgaatgacttttt-aaattcaatcgaaccaattcataccacatgcttctttatctcgcgatttggatgacttt 344  Q
    ||||||||||||           | | || |||| ||||| ||| |||| |||||||| ||| ||||||||||| ||||||||||  |||||||||||||    
T  33910782 ccgcattggtttgatttggtttggttttggatgaatttttaaaaatcaaccgaaccaaatcaaaccacatgcttttttatctcgcattttggatgacttt 33910881  T
Q  345 tatgctcaaa 354  Q
    ||||||||||    
T  33910882 tatgctcaaa 33910891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 157 - 368
Target Start/End: Complemental strand, 45691973 - 45691756
Alignment:
Q  157 taaaatgtcctatgtttattttgtaacaagttggcaatattagagttaatgtaatannnnnnnatctcgcgataaaccgcatcaaccgaaccaatccaaa 256  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||       ||||| ||||||||||||  |||||||||||||||||    
T  45691973 taaaatgtcctatgtttattttgtaacaagttgccaatattagagttaatgtaata-ttttttatctcacgataaaccgcacaaaccgaaccaatccaaa 45691875  T
Q  257 ccgca-----ttggtttggtgtgaatgacttttt-aaattcaatcgaaccaattcataccacatg-cttctttatctcgcgatttggatgacttttatgc 349  Q
    |||||     ||||||| || || |||||||||| ||| |||| ||||||||  || ||| ||||  || ||||| ||||| |||||||||| ||| |||    
T  45691874 ccgcattagtttggtttagtttggatgactttttaaaaatcaaccgaaccaaaccaaaccgcatgttttttttatttcgcggtttggatgacatttttgc 45691775  T
Q  350 tcaaaatcgaatcaaaccg 368  Q
    ||||||  |||||||||||    
T  45691774 tcaaaactgaatcaaaccg 45691756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 157 - 379
Target Start/End: Original strand, 39256542 - 39256770
Alignment:
Q  157 taaaatgtcctatgtttattttgtaacaagttggcaatattagagttaatgtaatannnnnnnatctcgcgataaaccgcatcaaccgaaccaatccaaa 256  Q
    |||||||||||| |||||||| ||||||||||||||||||||||||||||||||||       ||| | ||||||||||||  ||||||||||||||||     
T  39256542 taaaatgtcctaagtttatttggtaacaagttggcaatattagagttaatgtaatatttttttatcacacgataaaccgcacaaaccgaaccaatccaag 39256641  T
Q  257 ccgca-----ttggtttggtgtgaatgacttttt-aaattcaatcgaaccaattcataccacatgcttctttatctcgcgatttggatgacttttatgct 350  Q
    ||| |     |||||||||| || |||||||||| ||| |||| ||||||||   | ||| ||||||| ||||||||||  || | ||||||||| ||||    
T  39256642 ccgtattggtttggtttggtttggatgactttttaaaaatcaaccgaaccaaactaaaccgcatgcttttttatctcgcagttcgaatgacttttgtgct 39256741  T
Q  351 caaaatcgaatcaaaccgtaccacgaaca 379  Q
    |||||  ||| ||||||| ||||||||||    
T  39256742 caaaacagaaccaaaccgcaccacgaaca 39256770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 157 - 271
Target Start/End: Original strand, 24910959 - 24911074
Alignment:
Q  157 taaaatgtcctatgtttattttgtaacaagttggcaatattagagttaatgtaata-nnnnnnnatctcgcgataaaccgcatcaaccgaaccaatccaa 255  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||| ||||||||||  ||||||||||||||||    
T  24910959 taaaatgtcctatgtttattttgtaacaagttggcaatattagagttaatgtaatattttttttatctcgcaataaaccgcacaaaccgaaccaatccaa 24911058  T
Q  256 accgcattggtttggt 271  Q
    || |||||||||||||    
T  24911059 actgcattggtttggt 24911074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 157 - 379
Target Start/End: Original strand, 42789520 - 42789737
Alignment:
Q  157 taaaatgtcctatgtttattttgtaacaagttggcaatattagagttaatgtaatannnnnnnatctcgcgataaaccgcatcaaccgaaccaatccaaa 256  Q
    |||||| || ||||||||||||||||||||| ||||||||||||||| |||||||        ||||||||||||||  ||||||||||||| ||||||     
T  42789520 taaaatatcgtatgtttattttgtaacaagtcggcaatattagagttgatgtaat-tttttttatctcgcgataaacaacatcaaccgaaccgatccaag 42789618  T
Q  257 ccgcattggtttggtgtgaatgacttttt-aaattcaatcgaaccaattcataccacatgcttctttatctcgcgatttggatgacttttatgctcaaaa 355  Q
    |||||||| |||||| || |||||||||| ||| ||||  |||||||     ||  ||||||| ||||||||||| |||| |||||||||||||| ||||    
T  42789619 ccgcattgatttggtttggatgactttttaaaaatcaactgaaccaa-----actgcatgcttttttatctcgcggtttgaatgacttttatgcttaaaa 42789713  T
Q  356 tcgaatcaaaccgtaccacgaaca 379  Q
    ||| | ||||||| ||| ||||||    
T  42789714 tcgtaccaaaccgcaccgcgaaca 42789737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 157 - 271
Target Start/End: Complemental strand, 32954224 - 32954110
Alignment:
Q  157 taaaatgtcctatgtttattttgtaacaagttggcaatattagagttaatgtaata-nnnnnnnatctcgcgataaaccgcatcaaccgaaccaatccaa 255  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||        ||||| ||||||||||||  ||||||||||||||||    
T  32954224 taaaatgtcctatgtttattt-gtaacaagttggcaatattagagttaatgtaatattttttttatctcacgataaaccgcacaaaccgaaccaatccaa 32954126  T
Q  256 accgcattggtttggt 271  Q
     |||||||||||||||    
T  32954125 gccgcattggtttggt 32954110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 166 - 379
Target Start/End: Complemental strand, 11899181 - 11898959
Alignment:
Q  166 ctatgtttattttgtaacaagttggcaatattagagttaatgtaatannnnnnn---atctcgcgataaaccgcatcaaccgaaccaatccaaaccgcat 262  Q
    |||||||||||||||||||| |||| |||||||||||||||||||||          ||||||||||||||||||  |||||||||||||||||||| ||    
T  11899181 ctatgtttattttgtaacaatttggaaatattagagttaatgtaatattttttttttatctcgcgataaaccgcacaaaccgaaccaatccaaaccgtat 11899082  T
Q  263 tggttt----------ggtgtgaatgactttttaaat-tcaatcgaaccaattcataccacatgcttctttatctcgcgatttggatgacttttatgctc 351  Q
    ||||||          ||| || |||| ||||||||  |||| ||||||||     |||||||| || |||||| |||| |||||||||||||| |||||    
T  11899081 tggtttagtttggtttggtttggatgattttttaaaaatcaaccgaaccaa-----accacatgtttttttatcgcgcggtttggatgacttttttgctc 11898987  T
Q  352 aaaatcgaatcaaaccgtaccacgaaca 379  Q
    |||| |||||||||||| ||| ||||||    
T  11898986 aaaaccgaatcaaaccgcaccgcgaaca 11898959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 185 - 271
Target Start/End: Complemental strand, 8211434 - 8211346
Alignment:
Q  185 agttggcaatattagagttaatgtaatannnnnnn--atctcgcgataaaccgcatcaaccgaaccaatccaaaccgcattggtttggt 271  Q
    |||||||||||||||||||||||||||          |||||||||| |||||||||||| ||||||||||||||||||||||||||||    
T  8211434 agttggcaatattagagttaatgtaatttttttatttatctcgcgattaaccgcatcaactgaaccaatccaaaccgcattggtttggt 8211346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 220 - 271
Target Start/End: Original strand, 5155297 - 5155348
Alignment:
Q  220 atctcgcgataaaccgcatcaaccgaaccaatccaaaccgcattggtttggt 271  Q
    |||||||||| |||||||||||| ||||||||||||||||||||||||||||    
T  5155297 atctcgcgattaaccgcatcaactgaaccaatccaaaccgcattggtttggt 5155348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 220 - 271
Target Start/End: Complemental strand, 20493867 - 20493816
Alignment:
Q  220 atctcgcgataaaccgcatcaaccgaaccaatccaaaccgcattggtttggt 271  Q
    |||||| ||| |||||||||||| ||||||||||||||||||||||||||||    
T  20493867 atctcgagattaaccgcatcaactgaaccaatccaaaccgcattggtttggt 20493816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 276 - 379
Target Start/End: Complemental strand, 32954090 - 32953987
Alignment:
Q  276 atgactttttaaat-tcaatcgaaccaattcataccacatgcttctttatctcgcgatttggatgacttttatgctcaaaatcgaatcaaaccgtaccac 374  Q
    |||||||||||||  |||| ||||||||  || ||| ||||||| ||||||||  | ||||||||||||||||| |||||| |||| ||||||| |||||    
T  32954090 atgactttttaaaaatcaaccgaaccaaaccaaaccgcatgcttttttatctcagg-tttggatgacttttatgttcaaaaccgaaccaaaccgcaccac 32953992  T
Q  375 gaaca 379  Q
    |||||    
T  32953991 gaaca 32953987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 281 - 379
Target Start/End: Original strand, 36203479 - 36203577
Alignment:
Q  281 tttttaaattcaatcgaaccaattcataccacatgcttctttatctcgcgatttggatgacttttatgctcaaaatcgaatcaaaccgtaccacgaaca 379  Q
    |||| ||| |||| |||||||| ||| ||| ||||||| ||||||| ||| |||||||||||||||  ||||||| |||| |||| || ||| ||||||    
T  36203479 ttttaaaagtcaaccgaaccaaatcaaaccgcatgcttttttatcttgcggtttggatgacttttaacctcaaaaccgaaccaaatcgcaccgcgaaca 36203577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 231 - 271
Target Start/End: Original strand, 26345033 - 26345073
Alignment:
Q  231 aaccgcatcaaccgaaccaatccaaaccgcattggtttggt 271  Q
    ||||||| ||||||| |||||||||||||||||||||||||    
T  26345033 aaccgcaccaaccgatccaatccaaaccgcattggtttggt 26345073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 230 - 269
Target Start/End: Complemental strand, 6248180 - 6248141
Alignment:
Q  230 aaaccgcatcaaccgaaccaatccaaaccgcattggtttg 269  Q
    |||||||||||||| | |||||||||||||||||||||||    
T  6248180 aaaccgcatcaacctatccaatccaaaccgcattggtttg 6248141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 228 - 271
Target Start/End: Original strand, 40095393 - 40095436
Alignment:
Q  228 ataaaccgcatcaaccgaaccaatccaaaccgcattggtttggt 271  Q
    |||||||||| ||||||| |||||||||||| ||||||||||||    
T  40095393 ataaaccgcaccaaccgatccaatccaaaccacattggtttggt 40095436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 221 - 271
Target Start/End: Complemental strand, 33769990 - 33769940
Alignment:
Q  221 tctcgcgataaaccgcatcaaccgaaccaatccaaaccgcattggtttggt 271  Q
    |||||| | ||||| || |||| ||||||||||||||||||||||||||||    
T  33769990 tctcgcaaaaaaccacaacaactgaaccaatccaaaccgcattggtttggt 33769940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 271
Target Start/End: Original strand, 11074373 - 11074414
Alignment:
Q  230 aaaccgcatcaaccgaaccaatccaaaccgcattggtttggt 271  Q
    |||||| ||||||||| |||||||||||||||||| ||||||    
T  11074373 aaaccgtatcaaccgatccaatccaaaccgcattgatttggt 11074414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 271
Target Start/End: Complemental strand, 17651860 - 17651819
Alignment:
Q  230 aaaccgcatcaaccgaaccaatccaaaccgcattggtttggt 271  Q
    |||||||||||||| | |||| ||||||||||||||||||||    
T  17651860 aaaccgcatcaaccaatccaaaccaaaccgcattggtttggt 17651819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 271
Target Start/End: Complemental strand, 34914232 - 34914191
Alignment:
Q  230 aaaccgcatcaaccgaaccaatccaaaccgcattggtttggt 271  Q
    |||||||| ||||||| |||||||||||| ||||||||||||    
T  34914232 aaaccgcaacaaccgatccaatccaaaccacattggtttggt 34914191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 46 - 147
Target Start/End: Original strand, 42789404 - 42789507
Alignment:
Q  46 gtaatacatgactatattaaagcaaaataatatattgttgatattgaaaataaaagcttaggatctatgcagttcatgtata----tatagtcatatttt 141  Q
    |||||||||||||||| ||| |||| | || |||||||||  ||||||||||||||  || |||||| ||| ||||||||||    ||| ||||||||||    
T  42789404 gtaatacatgactatactaaggcaacacaa-atattgttgg-attgaaaataaaagtataagatctacgcaattcatgtataattgtatggtcatatttt 42789501  T
Q  142 atcatg 147  Q
    ||||||    
T  42789502 atcatg 42789507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 117; Significance: 2e-59; HSPs: 36)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 157 - 366
Target Start/End: Complemental strand, 32823774 - 32823566
Alignment:
Q  157 taaaatgtcctatgtttattttgtaacaagttggcaatattagagttaatgtaatannnnnnnatctcgcgataaaccgcatcaaccgaaccaatccaaa 256  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||  |||||||||||||||||    
T  32823774 taaaatgtcctatgtttattttgtaacaagttggcaatattagagttaatgtaatatttttt-atctcgcgataaaccgcacaaaccgaaccaatccaaa 32823676  T
Q  257 ccgcattggtttggtgtgaatgacttttt-aaattcaatcgaaccaattcataccacatgcttctttatctcgcgatttggatgacttttatgctcaaaa 355  Q
    |||||||| |||||| || |||||||||| ||| |||| ||||||||  || ||| ||||||| ||||||||||||||||||||||||||||||| ||||    
T  32823675 ccgcattgatttggtttggatgactttttaaaaatcaaccgaaccaa-ccaaaccgcatgcttttttatctcgcgatttggatgacttttatgctaaaaa 32823577  T
Q  356 tcgaatcaaac 366  Q
    ||||| |||||    
T  32823576 tcgaaccaaac 32823566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 56 - 360
Target Start/End: Original strand, 31982805 - 31983111
Alignment:
Q  56 actatattaaagcaaaataatatattgttgatattgaaaataaaagcttaggatctatgcagttcatgtatatatagtcatattttatcatgtnnnnnnn 155  Q
    |||||||||| ||| || |||||||||||| ||||||||||||||| |||||||||||||| ||||||||||     ||||||||||||||||           
T  31982805 actatattaacgcataacaatatattgttggtattgaaaataaaagtttaggatctatgcaattcatgtataa----tcatattttatcatgttaacagc 31982900  T
Q  156 n---taaaatgtcctatgtttattttgtaacaagttggcaatattagagttaatgta--atannnnnnnatctcgcgataaaccgcatcaaccgaaccaa 250  Q
        |||||||||||||||||||||||||| ||||||||||||||||||||||||||  |||       ||||||| |||||||||| ||||||||||||    
T  31982901 aaaataaaatgtcctatgtttattttgtaataagttggcaatattagagttaatgtaatatatttttttatctcgcaataaaccgcaccaaccgaaccaa 31983000  T
Q  251 tccaaaccgcattggtttggtgtgaatgacttttt-aaattcaatcgaaccaattcataccacatgcttctttatctcgcgatttggatgacttttatgc 349  Q
    ||||| || | |||||||||| || |||||||||| ||| ||||  |||||||  || ||  |||  || ||||||||||| ||||||| ||||||||||    
T  31983001 tccaacccacgttggtttggtttggatgactttttaaaaatcaactgaaccaaaccaaactgcatatttttttatctcgcggtttggataacttttatgc 31983100  T
Q  350 tcaaaatcgaa 360  Q
    |||||| ||||    
T  31983101 tcaaaaccgaa 31983111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 164 - 379
Target Start/End: Original strand, 18673109 - 18673324
Alignment:
Q  164 tcctatgtttattttgtaacaagttggcaatattagagttaatgtaatannnnnnnatctcgcgataaaccgcatcaaccgaaccaatccaaaccgcatt 263  Q
    |||||||||||||||| ||||||||| ||||||||||||||||||||||       |||||||||||||||||| ||||||||||||||||| || ||||    
T  18673109 tcctatgtttattttggaacaagttgtcaatattagagttaatgtaatatttttt-atctcgcgataaaccgcaccaaccgaaccaatccaagccacatt 18673207  T
Q  264 ggtttggtgtgaatgacttttt-aaattcaatcgaaccaattcataccacatgcttctttatctcgcgatttggatgacttttatgctcaaaatcgaatc 362  Q
    | |||||| || |||||||||| ||||||||  |||| ||  || | ||||||||| ||||||||||| |||||||||||||||||||||||| |||| |    
T  18673208 gttttggtttggatgactttttgaaattcaactgaactaaaccaaatcacatgcttttttatctcgcggtttggatgacttttatgctcaaaaccgaacc 18673307  T
Q  363 aaaccgtaccacgaaca 379  Q
    ||| || ||| ||||||    
T  18673308 aaatcgcaccgcgaaca 18673324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 157 - 368
Target Start/End: Original strand, 27054642 - 27054855
Alignment:
Q  157 taaaatgtcctatgtttattttgtaacaagttggcaatattagagttaatgtaatannnnnnn-atctcgcgataaaccgcatcaaccgaaccaatccaa 255  Q
    ||||||||  |||||||||||||||||||||||| |||||||||||||||||||||        |||||| |||||||||||  ||||||||||||||||    
T  27054642 taaaatgttatatgtttattttgtaacaagttggaaatattagagttaatgtaatattttttttatctcgtgataaaccgcacaaaccgaaccaatccaa 27054741  T
Q  256 accgcattggtttggtgtgaatgacttttt-aaattcaatcgaaccaattcataccacatgcttctttatctcgcgatttggatgacttttatgctcaaa 354  Q
    |||||||||||||||| || ||| |||||| ||| |||| ||||||||  || ||| ||||||| ||||||||||| |||||||||||||| ||||||||    
T  27054742 accgcattggtttggtttggatggctttttaaaaatcaaccgaaccaaaccaaaccgcatgcttttttatctcgcggtttggatgacttttttgctcaaa 27054841  T
Q  355 atcgaatcaaaccg 368  Q
    | | || |||||||    
T  27054842 accaaaccaaaccg 27054855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 88 - 366
Target Start/End: Complemental strand, 1335570 - 1335280
Alignment:
Q  88 attgaaaataaaagcttaggatctatgcagttcatgtata----tatagtcatattttatcatgtnnnnnnnn---taaaatgtcctatgtttattttgt 180  Q
    |||||||||||||| |||||||||||||| ||||||||||    |||||||||||||||||||||           ||||||||||||||||||||||||    
T  1335570 attgaaaataaaagtttaggatctatgcaattcatgtataattgtatagtcatattttatcatgtaaacaacaaaataaaatgtcctatgtttattttgt 1335471  T
Q  181 aacaagttggcaatattagagttaatgtaatannnnnnnatctcgcgataaaccgcatcaaccgaaccaatccaaaccgca-----ttggtttggtgtga 275  Q
    || |||||||||||||||||||||||||||||       | || ||||||||||||| ||||||||| ||||||| |||||     |||||||||| ||     
T  1335470 aataagttggcaatattagagttaatgtaatatttttttaacttgcgataaaccgcaccaaccgaactaatccaagccgcattgatttggtttggtttgg 1335371  T
Q  276 atgacttttt-aaattcaatcgaaccaattcataccacatgcttctttatctcgcgatttggatgacttttatgctcaaaatcgaatcaaac 366  Q
    | |||||||| ||| |||| ||||||||  || ||||  ||||| |||||||||  | ||||||||||||||||||||||| |||| |||||    
T  1335370 aggactttttaaaaatcaaccgaaccaaaccaaaccaggtgcttttttatctcg-tagttggatgacttttatgctcaaaaccgaaccaaac 1335280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 157 - 367
Target Start/End: Complemental strand, 13852485 - 13852269
Alignment:
Q  157 taaaatgtcctatgtttattttgtaacaagttggcaatattagagttaatgtaatannnnnnnatctcgcgataaaccgcatcaaccgaaccaatccaaa 256  Q
    ||||||||||||||||||||||||| ||||||| ||||||| ||||||||||||||       |||||| |||||||| ||  |||||||||||||||||    
T  13852485 taaaatgtcctatgtttattttgtaccaagttgacaatattggagttaatgtaatatttttttatctcgtgataaacctcacaaaccgaaccaatccaaa 13852386  T
Q  257 ccgcattggtttggtgtga-----atgactttttaaat-tcaatcgaaccaattcataccacatgcttctttatctcgcgatttggatgacttttatgct 350  Q
    ||||||||||||||| ||      |||||||||||||  |||| ||||||||  || ||| ||||||| ||||||||||  |||||||||||||||||||    
T  13852385 ccgcattggtttggtttggtttggatgactttttaaaaatcaaccgaaccaaaccaaaccgcatgcttttttatctcgcagtttggatgacttttatgct 13852286  T
Q  351 caaaatcgaatcaaacc 367  Q
    ||||| |||| ||||||    
T  13852285 caaaaccgaaccaaacc 13852269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 157 - 368
Target Start/End: Original strand, 24361405 - 24361616
Alignment:
Q  157 taaaatgtcctatgtttattttgtaacaagttggcaatattagagttaatgtaatannnnnnnatctcgcgataaaccgcatcaaccgaaccaatccaaa 256  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||       |||||  |||||||||||  |||||||||||||||||    
T  24361405 taaaatgtcctatgtttattttgtaacaagttgacaatattagagttaatgtaatatttttttatctcatgataaaccgcacaaaccgaaccaatccaaa 24361504  T
Q  257 ccgcattggtttggtgtgaatga-ctttttaaattcaatcgaaccaattcataccacatgcttctttatctcgcgatttggatgacttttatgctcaaaa 355  Q
    ||||||||||||||| || ||||  |||||||| ||||  |||||||  || |||||||| || |||||||| || ||| |||||||||| | |||||||    
T  24361505 ccgcattggtttggtttggatgatttttttaaaatcaactgaaccaaaccaaaccacatgtttttttatctcacggtttagatgactttt-ttctcaaaa 24361603  T
Q  356 tcgaatcaaaccg 368  Q
     |||| |||||||    
T  24361604 ccgaaccaaaccg 24361616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 157 - 379
Target Start/End: Original strand, 31876547 - 31876763
Alignment:
Q  157 taaaatgtcctatgtttattttgtaacaagttggcaatattagagttaatgtaatannnnnnnatctcgcgataaaccgcatcaaccgaaccaatccaaa 256  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||  ||  |||||||||||||    
T  31876547 taaaatgtcctatgattattttgtaacaagttggcaatattagagttaatgtaatatttttt-atctcgcgataaaccgcacaaattgaaccaatccaaa 31876645  T
Q  257 ccgcattggtttggtgtgaatgactttttaaat-tcaatcgaaccaattcataccacatgcttctttatctcgcgatttggatgacttttatgctcaaaa 355  Q
    |||||||||||||     ||||||||||||||  |||| |||||| |  || ||  ||||||| ||||| ||||| ||||||||||||||||||||||||    
T  31876646 ccgcattggtttg-----aatgactttttaaaaatcaaccgaaccgaaccaaactgcatgcttttttatttcgcggtttggatgacttttatgctcaaaa 31876740  T
Q  356 tcgaatcaaaccgtaccacgaaca 379  Q
     |||| ||||||| ||| ||||||    
T  31876741 ccgaa-caaaccgcaccgcgaaca 31876763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 157 - 285
Target Start/End: Original strand, 24361199 - 24361327
Alignment:
Q  157 taaaatgtcctatgtttattttgtaacaagttggcaatattagagttaatgtaatannnnnnnatctcgcgataaaccgcatcaaccgaaccaatccaaa 256  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||       |||||| |||||||||||  |||||||||||||||||    
T  24361199 taaaatgtcctatgtttattttgtaacaagttgacaatattagagttaatgtaatatttttttatctcgtgataaaccgcacaaaccgaaccaatccaaa 24361298  T
Q  257 ccgcattggtttggtgtgaatgacttttt 285  Q
    ||||||| ||||||| || |||| |||||    
T  24361299 ccgcattagtttggtttggatgatttttt 24361327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 33 - 212
Target Start/End: Complemental strand, 10069505 - 10069327
Alignment:
Q  33 gtttatgacataggtaatacatgactatattaaag-caaaataatatattgttgatattgaaaataaaagcttaggatctatgcagttcatgtatatata 131  Q
    |||||||||| ||||||||||||| |||||||| | || || |||||||||||| ||||||||||||||| || ||||||||||| ||||||||||        
T  10069505 gtttatgacacaggtaatacatgattatattaagggcagaacaatatattgttggtattgaaaataaaagtttgggatctatgca-ttcatgtata---- 10069411  T
Q  132 gtcatattttatcatgtnnnnnnnn---taaaatgtcctatgtttattttgtaacaagttggcaatattagagttaatgtaata 212  Q
    ||||||||||||||| |           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  10069410 gtcatattttatcatctaaacagcaaaataaaatgtcccatgtttattttgtaacaagttggcaatattagagttaatgtaata 10069327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 157 - 284
Target Start/End: Complemental strand, 22366627 - 22366500
Alignment:
Q  157 taaaatgtcctatgtttattttgtaacaagttggcaatattagagttaatgtaatannnnnnnatctcgcgataaaccgcatcaaccgaaccaatccaaa 256  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||        |||| |||||||||||||  |||| |||||||||||     
T  22366627 taaaatgtcctatgtttattttgtaacaaattggcaatattagagttaatgtaatttttttttatcttgcgataaaccgcacaaaccaaaccaatccaag 22366528  T
Q  257 ccgcattggtttggtgtgaatgactttt 284  Q
    ||||||||||||||| || |||||||||    
T  22366527 ccgcattggtttggtttggatgactttt 22366500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 185 - 379
Target Start/End: Original strand, 11206295 - 11206492
Alignment:
Q  185 agttggcaatattagagttaatgtaatannnnnnn--atctcgcgataaaccgcatcaaccgaaccaatccaaaccgcattggtttggtgtgaatgactt 282  Q
    |||||||||||||||||||||||||||          |||||||||| |||||||||||| |||||||||||||||||||||||||||| || |||||||    
T  11206295 agttggcaatattagagttaatgtaatttttttatttatctcgcgattaaccgcatcaactgaaccaatccaaaccgcattggtttggtttggatgactt 11206394  T
Q  283 ttt-aaattcaatcgaaccaattcataccacatgcttctttatctcgcgatttggatgacttttatgctcaaaatcgaatcaaaccgtaccacgaaca 379  Q
    ||| ||| |||| ||||||||  || ||| |||| || ||| ||||||| ||||||||| | |||||||  ||| |||| ||||||| ||| ||||||    
T  11206395 tttaaaaatcaaccgaaccaaaccaaaccgcatgtttttttctctcgcggtttggatgattattatgcttgaaaccgaaccaaaccgcaccgcgaaca 11206492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 157 - 237
Target Start/End: Complemental strand, 43429345 - 43429265
Alignment:
Q  157 taaaatgtcctatgtttattttgtaacaagttggcaatattagagttaatgtaatannnnnnnatctcgcgataaaccgca 237  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||    
T  43429345 taaaatgtcctatgtttattttgtaacaagttggcaatattagagttaatgtaatatttttttatctcgcgataaaccgca 43429265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 33 - 126
Target Start/End: Complemental strand, 36508631 - 36508538
Alignment:
Q  33 gtttatgacataggtaatacatgactatattaaagcaaaataatatattgttgatattgaaaataaaagcttaggatctatgcagttcatgtat 126  Q
    |||||||||| | ||||||||||| |||||||| |||||| |||||||||||| ||||||||||||||| |||||||||||||| || ||||||    
T  36508631 gtttatgacacatgtaatacatgattatattaaggcaaaacaatatattgttggtattgaaaataaaagtttaggatctatgcaattgatgtat 36508538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 157 - 368
Target Start/End: Complemental strand, 48675289 - 48675071
Alignment:
Q  157 taaaatgtcctatgtttattttgtaacaagttggcaatattagagttaatgtaata-nnnnnnnatctcgcgataaaccgcatcaaccgaaccaatccaa 255  Q
    ||||||||||||| ||||||||||||||| ||| |||||||||||||||| |||||        ||||||||||||||||||  ||||||||| ||||||    
T  48675289 taaaatgtcctatatttattttgtaacaaattgacaatattagagttaatataatattttttttatctcgcgataaaccgcacaaaccgaaccgatccaa 48675190  T
Q  256 accgca-----ttggtttggtgtgaatgactt-tttaaattcaatcgaaccaattcataccacatgcttctttatctcgcgatttggatgacttttatgc 349  Q
     |||||     |||||||||  || ||||||| || ||| |||| |||||||| ||| ||||| ||||| ||||||| ||| ||||| |||  ||||||     
T  48675189 gccgcattgatttggtttggcttggatgacttcttaaaaatcaaccgaaccaaatcaaaccacgtgcttttttatcttgcggtttgggtgaaatttatgt 48675090  T
Q  350 tcaaaatcgaatcaaaccg 368  Q
     ||||| |||| |||||||    
T  48675089 ccaaaaccgaagcaaaccg 48675071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 157 - 212
Target Start/End: Complemental strand, 5932821 - 5932766
Alignment:
Q  157 taaaatgtcctatgtttattttgtaacaagttggcaatattagagttaatgtaata 212  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  5932821 taaaatttcctatgtttattttgtaacaagttggcaatattagagttaatgtaata 5932766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 240 - 368
Target Start/End: Complemental strand, 47903336 - 47903207
Alignment:
Q  240 aaccgaaccaatccaaaccgcattggtttggtgtgaatgactttttaaat-tcaatcgaaccaattcataccacatgcttctttatctcgcgatttggat 338  Q
    |||| |||||||||||  | |||||||||||| || |||||||||||||  |||| ||||||||  || ||| ||||||| ||||||||||| |||||||    
T  47903336 aaccaaaccaatccaagtcacattggtttggtttggatgactttttaaaaatcaaccgaaccaaaccaaaccgcatgcttttttatctcgcggtttggat 47903237  T
Q  339 gacttttatgctcaaaatcgaatcaaaccg 368  Q
    || ||||||||| |||| |||| |||||||    
T  47903236 gatttttatgcttaaaaccgaaccaaaccg 47903207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 243 - 368
Target Start/End: Original strand, 7209266 - 7209392
Alignment:
Q  243 cgaaccaatccaaaccgcattggtttggtgtgaatgacttttt-aaattcaatcgaaccaattcataccacatgcttctttatctcgcgatttggatgac 341  Q
    |||||||||||||  |||||||||||||| || |||||||||| ||| |||| ||||||||  || |||  |||||| ||||||||| | ||||||||||    
T  7209266 cgaaccaatccaagacgcattggtttggtttggatgactttttaaaaatcaaccgaaccaaaccaaaccgtatgcttttttatctcgtggtttggatgac 7209365  T
Q  342 ttttatgctcaaaatcgaatcaaaccg 368  Q
    ||||||  |||||| |||| |||||||    
T  7209366 ttttatattcaaaaccgaaccaaaccg 7209392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 157 - 255
Target Start/End: Complemental strand, 7760281 - 7760183
Alignment:
Q  157 taaaatgtcctatgtttattttgtaacaagttggcaatattagagttaatgtaatannnnnnnatctcgcgataaaccgcatcaaccgaaccaatccaa 255  Q
    ||||||||| ||||||||||||||||||||| ||||||||||||||||||| ||||       || |||||||||||||||  |||| |||||| ||||    
T  7760281 taaaatgtcatatgtttattttgtaacaagtcggcaatattagagttaatgaaatatttttttatatcgcgataaaccgcacaaaccaaaccaaaccaa 7760183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 185 - 271
Target Start/End: Complemental strand, 12117750 - 12117662
Alignment:
Q  185 agttggcaatattagagttaatgtaatannnnnnn--atctcgcgataaaccgcatcaaccgaaccaatccaaaccgcattggtttggt 271  Q
    |||||||||||||||||||||||||||          |||||||||| |||||||||||| ||||||||||||||||||||||||||||    
T  12117750 agttggcaatattagagttaatgtaatttttttatttatctcgcgattaaccgcatcaactgaaccaatccaaaccgcattggtttggt 12117662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 185 - 271
Target Start/End: Complemental strand, 47069824 - 47069736
Alignment:
Q  185 agttggcaatattagagttaatgtaatannnnnnn--atctcgcgataaaccgcatcaaccgaaccaatccaaaccgcattggtttggt 271  Q
    |||||||||||||||||||||||||||          |||||||||| |||||||||||| ||||||||||||||||||||||||||||    
T  47069824 agttggcaatattagagttaatgtaatttttttatttatctcgcgattaaccgcatcaactgaaccaatccaaaccgcattggtttggt 47069736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 220 - 271
Target Start/End: Original strand, 3213186 - 3213237
Alignment:
Q  220 atctcgcgataaaccgcatcaaccgaaccaatccaaaccgcattggtttggt 271  Q
    |||||||||| |||||||||||| ||||||||||||||||||||||||||||    
T  3213186 atctcgcgattaaccgcatcaactgaaccaatccaaaccgcattggtttggt 3213237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 19 - 114
Target Start/End: Complemental strand, 7760452 - 7760357
Alignment:
Q  19 ggtatgttatgtcggtttatgacataggtaatacatgactatattaaagcaaaataatatattgttgatattgaaaataaaagcttaggatctatg 114  Q
    |||||||| || | |||||||| | | |||||||||||||||||||| ||| || |||| ||||||| ||||||||||||||| |||||| |||||    
T  7760452 ggtatgttctgccagtttatgatacatgtaatacatgactatattaaggcagaacaatacattgttggtattgaaaataaaagtttaggaactatg 7760357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 220 - 350
Target Start/End: Complemental strand, 36508055 - 36507924
Alignment:
Q  220 atctcgcgataaaccgcatcaaccgaaccaatccaaaccgcattggtttggtgtgaatgacttttt-aaattcaatcgaaccaattcataccacatgctt 318  Q
    ||||| ||||||||  || ||||||||||||||||| ||||||||||||||| || |||||||||| ||| |||| |||| ||| ||| ||  |||| ||    
T  36508055 atctcacgataaacgacaccaaccgaaccaatccaagccgcattggtttggtttggatgactttttaaaaatcaaccgaatcaaatcaaactgcatgatt 36507956  T
Q  319 ctttatctcgcgatttggatgacttttatgct 350  Q
     | |||||| | |||||||||||||| |||||    
T  36507955 ttctatctcacaatttggatgactttaatgct 36507924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 185 - 271
Target Start/End: Complemental strand, 10671976 - 10671888
Alignment:
Q  185 agttggcaatattagagttaatgtaatannnnnnn--atctcgcgataaaccgcatcaaccgaaccaatccaaaccgcattggtttggt 271  Q
    |||||||||||||||||||||||||||          |||||||||| ||| |||||||| ||||||||||||||||||||||||||||    
T  10671976 agttggcaatattagagttaatgtaatttttttatttatctcgcgattaactgcatcaactgaaccaatccaaaccgcattggtttggt 10671888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 185 - 379
Target Start/End: Original strand, 47204384 - 47204591
Alignment:
Q  185 agttggcaatattagagttaatgtaatannnnnnn--atctcgcgataaaccgcatcaaccgaaccaatccaaaccgca----------ttggtttggtg 272  Q
    |||||||||||||||||||||||||||          |||||||||| |||||||||||| |||||||| |||||||||          ||||||||||     
T  47204384 agttggcaatattagagttaatgtaatttttttatttatctcgcgattaaccgcatcaactgaaccaattcaaaccgcattgatttggtttggtttggtt 47204483  T
Q  273 tgaatgacttttt-aaattcaatcgaaccaattcataccacatgcttctttatctcgcgatttggatgacttttatgctcaaaatcgaatcaaaccgtac 371  Q
    || |||||||||| ||| |||| ||||||||  || ||| ||||||| ||| ||||||| ||||||||| | |||||||  ||| |||| ||||||| ||    
T  47204484 tggatgactttttaaaaatcaaccgaaccaaaccaaaccgcatgcttttttctctcgcggtttggatgattgttatgcttgaaaccgaaccaaaccgcac 47204583  T
Q  372 cacgaaca 379  Q
    | ||||||    
T  47204584 cgcgaaca 47204591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 227 - 356
Target Start/End: Original strand, 2408942 - 2409077
Alignment:
Q  227 gataaaccgcatcaaccgaaccaatccaaaccgcattggtttggtgt-----gaatgactttttaaat-tcaatcgaaccaattcataccacatgcttct 320  Q
    |||||||||||  |||| |||||||||||||||||||| |||||| |     |||| ||||||||||  ||||| ||| |||  || ||| |||| || |    
T  2408942 gataaaccgcacaaaccaaaccaatccaaaccgcattgatttggtttagtttgaataactttttaaaaatcaattgaatcaaaccaaaccgcatggtttt 2409041  T
Q  321 ttatctcgcgatttggatgacttttatgctcaaaat 356  Q
    ||||||| || |||||||||||||||||||||||||    
T  2409042 ttatctcacggtttggatgacttttatgctcaaaat 2409077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 220 - 378
Target Start/End: Complemental strand, 11216263 - 11216104
Alignment:
Q  220 atctcgcgataaaccgcatcaaccgaaccaatccaaaccgcattggtttggtgtgaatgactttttaaat-tcaatcgaaccaattcataccacatgctt 318  Q
    |||||||||||||| || ||||  |||||||| ||||| |||||| |||||| || |  ||||||||||  |||||| ||  || ||| |||||||| ||    
T  11216263 atctcgcgataaactgcgtcaattgaaccaattcaaactgcattgatttggtttggacaactttttaaaaatcaatcaaattaaatcaaaccacatgttt 11216164  T
Q  319 ctttatctcgcgatttggatgacttttatgctcaaaatcgaatcaaaccgtaccacgaac 378  Q
     |||||||| |  || | |||| ||||||||||||||||||| ||||| | |||||||||    
T  11216163 ttttatctcacagttcgaatgatttttatgctcaaaatcgaaccaaactgcaccacgaac 11216104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 313 - 379
Target Start/End: Original strand, 45898128 - 45898194
Alignment:
Q  313 atgcttctttatctcgcgatttggatgacttttatgctcaaaatcgaatcaaaccgtaccacgaaca 379  Q
    |||||| ||||||||||| |||||||||||||||||| ||||| |||| ||||||| ||| ||||||    
T  45898128 atgcttttttatctcgcggtttggatgacttttatgcacaaaaccgaaccaaaccgcaccgcgaaca 45898194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 157 - 212
Target Start/End: Complemental strand, 47903411 - 47903356
Alignment:
Q  157 taaaatgtcctatgtttattttgtaacaagttggcaatattagagttaatgtaata 212  Q
    ||||||||  |||||||||||||||||||  |||||||||||||||||| ||||||    
T  47903411 taaaatgtaatatgtttattttgtaacaacctggcaatattagagttaaagtaata 47903356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 312 - 385
Target Start/End: Complemental strand, 5932711 - 5932638
Alignment:
Q  312 catgcttctttatctcgcgatttggatgacttttatgctcaaaatcgaatcaaaccgtaccacgaacattccta 385  Q
    |||||||  |||||||||| ||  |||||||||||||||||||| |||||||||||| ||| | ||||| ||||    
T  5932711 catgctttcttatctcgcggttcagatgacttttatgctcaaaaccgaatcaaaccgcaccgcaaacatcccta 5932638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 320 - 380
Target Start/End: Complemental strand, 10069201 - 10069141
Alignment:
Q  320 tttatctcgcgatttggatgacttttatgctcaaaatcgaatcaaaccgtaccacgaacat 380  Q
    ||||| ||||| ||| |||||||||||||||||||| |||| ||||||| ||| |||||||    
T  10069201 tttatatcgcggtttagatgacttttatgctcaaaaccgaaccaaaccgcaccgcgaacat 10069141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 262 - 351
Target Start/End: Complemental strand, 43429242 - 43429152
Alignment:
Q  262 ttggtttggtgtgaatgactttttaaat-tcaatcgaaccaattcataccacatgcttctttatctcgcgatttggatgacttttatgctc 351  Q
    ||||||| || || |||||||||||||  |||| ||||||||  || ||| | ||| | ||||||||||| ||||||||||||||||||||    
T  43429242 ttggttttgtttggatgactttttaaaaatcaaccgaaccaaaccaaaccgcgtgcatttttatctcgcggtttggatgacttttatgctc 43429152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 271
Target Start/End: Original strand, 10338790 - 10338831
Alignment:
Q  230 aaaccgcatcaaccgaaccaatccaaaccgcattggtttggt 271  Q
    |||||||||||||||| ||||||||||||| |||| ||||||    
T  10338790 aaaccgcatcaaccgatccaatccaaaccgaattgatttggt 10338831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 276 - 379
Target Start/End: Complemental strand, 10671873 - 10671769
Alignment:
Q  276 atgacttttt-aaattcaatcgaaccaattcataccacatgcttctttatctcgcgatttggatgacttttatgctcaaaatcgaatcaaaccgtaccac 374  Q
    |||||||||| ||| |||| ||||||||  || ||| ||||||| ||| ||||||| ||||||||| | |||||||  ||| |||| ||||||| ||| |    
T  10671873 atgactttttaaaaatcaaccgaaccaaaccaaaccgcatgcttttttctctcgcggtttggatgattattatgcttgaaaccgaaccaaaccgcaccgc 10671774  T
Q  375 gaaca 379  Q
    |||||    
T  10671773 gaaca 10671769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 276 - 379
Target Start/End: Complemental strand, 47069721 - 47069617
Alignment:
Q  276 atgacttttt-aaattcaatcgaaccaattcataccacatgcttctttatctcgcgatttggatgacttttatgctcaaaatcgaatcaaaccgtaccac 374  Q
    |||||||||| ||| |||| ||||||||  || ||| ||||||| ||| ||||||| ||||||||| | |||||||  ||| |||| ||||||| ||| |    
T  47069721 atgactttttaaaaatcaaccgaaccaaaccaaaccgcatgcttttttctctcgcggtttggatgattattatgcttgaaaccgaaccaaaccgcaccgc 47069622  T
Q  375 gaaca 379  Q
    |||||    
T  47069621 gaaca 47069617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 112; Significance: 2e-56; HSPs: 33)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 19 - 271
Target Start/End: Complemental strand, 35359258 - 35358999
Alignment:
Q  19 ggtatgttatgtcggtttatgacataggtaatacatgactatattaaagcaaaataatatattgttgatattgaaaataaaagcttaggatctatgcagt 118  Q
    |||||||| || | |||||| ||| | |||||||||||||||||||| ||| || |||||||||||| ||||||||||||||| |||||||| ||| | |    
T  35359258 ggtatgttctgccagtttataacacaagtaatacatgactatattaacgcataaaaatatattgttggtattgaaaataaaagtttaggatcaatgaaat 35359159  T
Q  119 tcatgtata----tatagtcatattttatcatgtnnnnnnnn---taaaatgtcctatgtttattttgtaacaagttggcaatattagagttaatgtaat 211  Q
    |||||||||    |||||||||||||||||||||           ||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  35359158 tcatgtataattgtatagtcatattttatcatgtaaacaacaaaataaaatgtcctatgtttatgttgtaacaagttggcaatattagagttaatgtaat 35359059  T
Q  212 annnnnnnatctcgcgataaaccgcatcaaccgaaccaatccaaaccgcattggtttggt 271  Q
    |       |||||||||||||||||||||||||||| ||||||| ||| |||||||||||    
T  35359058 acttttttatctcgcgataaaccgcatcaaccgaactaatccaagccgtattggtttggt 35358999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 157 - 367
Target Start/End: Complemental strand, 42544830 - 42544619
Alignment:
Q  157 taaaatgtcctatgtttattttgtaacaagttggcaatattagagttaatgtaatannnnnnnatctcgcgataaaccgcatcaaccgaaccaatccaaa 256  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||  |||||||||||||||||    
T  42544830 taaaatgttctatgtttattttgtaacaagttggcaatattagagttaatgtaatatttttttatctcgcgataaaccgcacaaaccgaaccaatccaaa 42544731  T
Q  257 ccgcattggtttggtgtgaatgactt-tttaaattcaatcgaaccaattcataccacatgcttctttatctcgcgatttggatgacttttatgctcaaaa 355  Q
    ||||||||||||||| || ||||||| || ||| |||| ||||||||  || ||| ||||||| ||||||||||| ||| |||||||||| |||||||||    
T  42544730 ccgcattggtttggtttggatgacttcttaaaaatcaaccgaaccaaaccaaaccgcatgcttttttatctcgcggtttagatgacttttttgctcaaaa 42544631  T
Q  356 tcgaatcaaacc 367  Q
     |||| ||||||    
T  42544630 ccgaagcaaacc 42544619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 157 - 368
Target Start/End: Original strand, 333189 - 333400
Alignment:
Q  157 taaaatgtcctatgtttattttgtaacaagttggcaatattagagttaatgtaatannnnnnnatctcgcgataaaccgcatcaaccgaaccaatccaaa 256  Q
    ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||       ||||||||||||||||||  |||| ||||||| |||     
T  333189 taaaatgtcatatgtttattttgtaacaagttgacaatattagagttaatgtaatatttttt-atctcgcgataaaccgcacaaaccaaaccaattcaag 333287  T
Q  257 ccgcattggtttggtgtgaatgactttttaaat-tcaatcgaaccaattcataccacatgcttctttatctcgcgatttggatgacttttatgctcaaaa 355  Q
    | ||||||||||||| || |||||||||||||  |||||||||||||  ||   | ||||||| | ||||||||| ||||||||||||||||||||||||    
T  333288 ctgcattggtttggtttggatgactttttaaaaatcaatcgaaccaaaccaattcgcatgcttttctatctcgcggtttggatgacttttatgctcaaaa 333387  T
Q  356 tcgaatcaaaccg 368  Q
    ||||| |||||||    
T  333388 tcgaaccaaaccg 333400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 157 - 379
Target Start/End: Original strand, 12680981 - 12681198
Alignment:
Q  157 taaaatgtcctatgtttattttgtaacaagttggcaatattagagttaatgtaatannnnnnnatctcgcgataaaccgcatcaaccgaaccaatccaaa 256  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||       ||||| |||||||| |||  |||| ||||||||||||    
T  12680981 taaaatatcctatgtttattttgtaacaagttggcaatattagagttaatgtaatatttttt-atctcacgataaactgcacaaacctaaccaatccaaa 12681079  T
Q  257 ccgcattggtttggtgtgaatgactttttaaat-tcaatcgaaccaattcataccacatgcttctttatctcgcgatttggatgacttttatgctcaaaa 355  Q
    ||||||||||||||| || |||| ||||||||  |||| ||||||||     ||||||||||| ||||||||||| | || |||||||||||||||||||    
T  12681080 ccgcattggtttggtttggatgaatttttaaaaatcaaccgaaccaa-----accacatgcttttttatctcgcggtctgaatgacttttatgctcaaaa 12681174  T
Q  356 tcgaatcaaaccgtaccacgaaca 379  Q
     ||||  |||||| ||| ||||||    
T  12681175 ccgaactaaaccgcaccgcgaaca 12681198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 19 - 368
Target Start/End: Original strand, 17085012 - 17085360
Alignment:
Q  19 ggtatgttatgtcggtttatgacataggtaatacatgactatattaaagcaaaataatatattgttgatattgaaaataaaagcttaggatctatgcagt 118  Q
    |||||||| || | |||||||||| | |||||||||||||||||||| ||| || |||||||| | | ||||||||||||||| |||||||||||||| |    
T  17085012 ggtatgttctgccagtttatgacacatgtaatacatgactatattaaggcagaacaatatattatgg-tattgaaaataaaagtttaggatctatgcaat 17085110  T
Q  119 tcatgtatatatagtcatattttatcatgtnnnnnnnn---taaaatgtcctatgtttattttgtaacaagttggcaatattagagttaatgtaatannn 215  Q
    |||||||||    |||||||||||| ||||           ||||||||| | |||||||||||||| |||| |||||||||||||||||  |||||       
T  17085111 tcatgtata----gtcatattttatgatgtaaacaacaaaataaaatgtcttgtgtttattttgtaagaagtcggcaatattagagttaacataatattt 17085206  T
Q  216 nnnnatctcgcgataaaccgcatcaaccgaaccaatccaaaccgcattggtttggtgtgaatgactttttaaat-tcaatcgaaccaattcataccacat 314  Q
        ||||| ||||||| |||| ||||||||| ||||||| || |||||||||| |  | |||||||||||||  |||| ||||||||   | | | |||    
T  17085207 ttttatctcacgataaatcgcaccaaccgaacgaatccaagccacattggtttgattgggatgactttttaaaaatcaaccgaaccaaactaaatcgcat 17085306  T
Q  315 gcttctttatctcgcgatttggatgacttttatgctcaaaatcgaatcaaaccg 368  Q
    |||| ||||||||| | ||||||||||||||||||||||||  ||| |||||||    
T  17085307 gcttttttatctcgtggtttggatgacttttatgctcaaaactgaaccaaaccg 17085360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 157 - 367
Target Start/End: Original strand, 2226789 - 2227006
Alignment:
Q  157 taaaatgtcctatgtttattttgtaacaagttggcaatattagagttaatgtaata-nnnnnnnatctcgcgataaaccgcatcaaccgaaccaatccaa 255  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||  ||||||||||||||||    
T  2226789 taaaatgtcctatgtttattttgtaacaagttggcaatattagagttaatgtaatattttttttatctcgcgataaaccgcacaaaccgaaccaatccaa 2226888  T
Q  256 accgc-----attggtttggtgtgaatgacttttt-aaattcaatcgaaccaattcataccacatgcttctttatctcgcgatttggatgacttttatgc 349  Q
    |||||     ||||||||||| || |||| ||||| ||| |||| ||||||||  || ||||| | ||| ||||||||||| ||||||||  ||||||||    
T  2226889 accgcattagattggtttggtttggatgagtttttaaaaatcaaccgaaccaaaccaaaccacgttcttttttatctcgcggtttggatgttttttatgc 2226988  T
Q  350 tcaaaatcgaatcaaacc 367  Q
    |||||| |||| ||||||    
T  2226989 tcaaaaccgaaccaaacc 2227006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 157 - 354
Target Start/End: Original strand, 12166074 - 12166273
Alignment:
Q  157 taaaatgtcctatgtttattttgtaacaagttggcaatattagagttaatgtaatannnnnnn-atctcgcgataaaccgcatcaaccgaaccaatccaa 255  Q
    ||||||||| ||||||||||||||||||||||| |||| |||||||||||||||||        |||||| |||||||| ||  |||| |||||||||||    
T  12166074 taaaatgtcatatgtttattttgtaacaagttgacaatgttagagttaatgtaatattttttttatctcgtgataaaccacacaaaccaaaccaatccaa 12166173  T
Q  256 accgcattggtttggtgtgaatgacttttt-aaattcaatcgaaccaattcataccacatgcttctttatctcgcgatttggatgacttttatgctcaaa 354  Q
     ||||||||||||||| || |||||||||| ||| |||| ||||||||  || ||  ||||||| ||||||||||||||| |||||||||||||||||||    
T  12166174 gccgcattggtttggtttggatgactttttaaaaatcaaccgaaccaaaccaaactgcatgcttttttatctcgcgattttgatgacttttatgctcaaa 12166273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 157 - 351
Target Start/End: Original strand, 36177006 - 36177211
Alignment:
Q  157 taaaatgtcctatgtttattttgtaacaagttggcaatattagagttaatgtaatannnnnnnatctcgcgataaaccgcatcaaccgaaccaatccaaa 256  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||| |||||||||||||  |||| |||||||||||     
T  36177006 taaaatgtcctatgtttattttgtaacaagttggcaatattagagttaatgtaatatttttttatcttgcgataaaccgcacaaacccaaccaatccaag 36177105  T
Q  257 ccgcattggtttg----------gtgtgaatgacttttt-aaattcaatcgaaccaattcataccacatgcttctttatctcgcgatttggatgactttt 345  Q
    |||||||||||||          || || |||||||||| ||| |||| ||||||||  || ||| ||||| | ||||||||||| ||||||||||||||    
T  36177106 ccgcattggtttggtttggttttgtttggatgactttttaaaaatcaaccgaaccaaaccaaaccgcatgcatttttatctcgcggtttggatgactttt 36177205  T
Q  346 atgctc 351  Q
    ||||||    
T  36177206 atgctc 36177211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 164 - 360
Target Start/End: Complemental strand, 38433868 - 38433665
Alignment:
Q  164 tcctatgtttattttgtaacaagttggcaatattagagttaatgtaata-nnnnnnnatctcgcgataaaccgcatcaaccgaaccaatccaaaccgca- 261  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||  |||||||||||||||| |||||     
T  38433868 tcctatgtttattttgtaacaagttggcaatattagagttaatgtaatattttttttatctcgcgataaaccgcacaaaccgaaccaatccaagccgcat 38433769  T
Q  262 ----ttggtttggtgtgaatgacttttt-aaattcaatcgaaccaattcataccacatgcttctttatctcgcgatttggatgacttttatgctcaaaat 356  Q
        |||||||||| || | |||||||| ||| |||| ||||||||   | ||| |||| || ||||||||||| |||| |||||||||||||||||||     
T  38433768 tggtttggtttggtttggaggactttttaaaaatcaaccgaaccaaactaaaccgcatgattttttatctcgcggtttgaatgacttttatgctcaaaac 38433669  T
Q  357 cgaa 360  Q
    ||||    
T  38433668 cgaa 38433665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 157 - 271
Target Start/End: Complemental strand, 9161159 - 9161046
Alignment:
Q  157 taaaatgtcctatgtttattttgtaacaagttggcaatattagagttaatgtaatannnnnnnatctcgcgataaaccgcatcaaccgaaccaatccaaa 256  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||       |||| |||||||||||||  |||||||||||||||||    
T  9161159 taaaatgtcctatgtttattttgtgacaagttggcaatattagagttaatgtaata-ttttttatcttgcgataaaccgcacaaaccgaaccaatccaaa 9161061  T
Q  257 ccgcattggtttggt 271  Q
    |||||||||||||||    
T  9161060 ccgcattggtttggt 9161046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 157 - 379
Target Start/End: Original strand, 30265700 - 30265925
Alignment:
Q  157 taaaatgtcctatgtttattttgtaacaagttggcaatattagagttaatgtaa--tannnnnnnatctcgcgataaaccgcatcaaccgaaccaatcca 254  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||  |        |||||||||| |||||||  |||||||| ||| ||    
T  30265700 taaaatgtcctatgtttattttgtaataagttggcaatattagagttaatgtaatttttttttttatctcgcgatgaaccgcacaaaccgaactaattca 30265799  T
Q  255 aaccgcattggtttggtgtgaatgacttttt-aaattcaatcgaaccaattcataccacatgcttctttatctcgcgatttggatgacttttatgctcaa 353  Q
    | ||||||||||||||| |  |||||||||| ||| |||| ||||||||  || ||  |||| || ||||||| ||| ||| ||||| ||||||||||||    
T  30265800 agccgcattggtttggttttgatgactttttaaaaatcaaccgaaccaaaccaaactgcatgtttttttatcttgcggtttagatgatttttatgctcaa 30265899  T
Q  354 aatcgaatcaaaccgtaccacgaaca 379  Q
    || | || ||||||| ||| ||||||    
T  30265900 aaccaaaccaaaccgcaccgcgaaca 30265925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 220 - 379
Target Start/End: Original strand, 27886390 - 27886550
Alignment:
Q  220 atctcgcgataaaccgcatcaaccgaaccaatccaaaccgcattggtttggtgtgaatgacttttt-aaattcaatcgaaccaattcataccacatgctt 318  Q
    |||||||||| |||||||||||| |||||||||||||||||||||||||||| || |||||||||| ||| |||| ||||||||  || ||| |||||||    
T  27886390 atctcgcgattaaccgcatcaactgaaccaatccaaaccgcattggtttggtttggatgactttttaaaaatcaaccgaaccaaaccaaaccgcatgctt 27886489  T
Q  319 ctttatctcgcgatttggatgacttttatgctcaaaatcgaatcaaaccgtaccacgaaca 379  Q
     ||| ||||||| ||||||||| | |||||||  ||| |||| ||||||| ||| ||||||    
T  27886490 ttttctctcgcggtttggatgattattatgcttgaaaccgaaccaaaccgcaccgcgaaca 27886550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 164 - 368
Target Start/End: Original strand, 9988769 - 9988978
Alignment:
Q  164 tcctatgtttattttgtaacaagttggcaatattagagttaatgtaatannnnnnnatctcgcgataaaccgcatcaaccgaaccaatccaaaccgcatt 263  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||| | |||||||||||| || |||||||    
T  9988769 tcctatgtttattttgtaacaagttggcaatattagagttaatgtaatatttttttatctcgcgataaaccgca-ccaccgaaccaatctaagccgcatt 9988867  T
Q  264 g-----gtttggtgtga-----atgactttttaaattcaatcgaaccaattcataccacatgcttctttatctcgcgatttggatgacttttatgctcaa 353  Q
    |     ||||||| |||     |||||||||||||   |||| |||| | ||| |||||||| || ||||||||| | ||||||||||||||||| ||||    
T  9988868 ggttttgtttggtttgatttggatgactttttaaa---aatc-aaccgaatcaaaccacatgtttttttatctcgtggtttggatgacttttatgttcaa 9988963  T
Q  354 aatcgaatcaaaccg 368  Q
    || ||||||| ||||    
T  9988964 aaccgaatcataccg 9988978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 157 - 271
Target Start/End: Original strand, 32521126 - 32521242
Alignment:
Q  157 taaaatgtcctatgtttattttgtaacaagttggcaatattagagttaatgtaata--nnnnnnnatctcgcgataaaccgcatcaaccgaaccaatcca 254  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||||| ||||||||||||  |||||||||||||||    
T  32521126 taaaatgtcctatgtttattttgtaacaagttggcaatattagagttaatgtaatatttttttttatctcacgataaaccgcacaaaccgaaccaatcca 32521225  T
Q  255 aaccgcattggtttggt 271  Q
    ||| |||||| ||||||    
T  32521226 aactgcattgatttggt 32521242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 167 - 271
Target Start/End: Original strand, 36103527 - 36103631
Alignment:
Q  167 tatgtttattttgtaacaagttggcaatattagagttaatgtaatannnnnnnatctcgcgataaaccgcatcaaccgaaccaatccaaaccgcattggt 266  Q
    ||||||||||||||||||||||||||||||||||||||||||||||       |||||||| |||||||||  |||||||| ||||||||| |||||| |    
T  36103527 tatgtttattttgtaacaagttggcaatattagagttaatgtaatatttttacatctcgcggtaaaccgcacaaaccgaacgaatccaaactgcattgat 36103626  T
Q  267 ttggt 271  Q
    |||||    
T  36103627 ttggt 36103631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 220 - 379
Target Start/End: Complemental strand, 30002120 - 30001960
Alignment:
Q  220 atctcgcgataaaccgcatcaaccgaaccaatccaaaccgcattggtttggtgtgaatgacttttt-aaattcaatcgaaccaattcataccacatgctt 318  Q
    |||||| ||| |||||||||||| |||||||||||||||||||||||||||| || |||||||||| |||  ||| ||||||||  || ||| |||||||    
T  30002120 atctcgtgattaaccgcatcaactgaaccaatccaaaccgcattggtttggtttggatgactttttaaaaaacaaccgaaccaaaccaaaccgcatgctt 30002021  T
Q  319 ctttatctcgcgatttggatgacttttatgctcaaaatcgaatcaaaccgtaccacgaaca 379  Q
     ||| ||||||| ||||||| | | |||||||  ||| |||| ||||||| ||| ||||||    
T  30002020 ttttctctcgcggtttggattattattatgcttgaaaccgaaccaaaccgcaccgcgaaca 30001960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 157 - 288
Target Start/End: Complemental strand, 10174249 - 10174126
Alignment:
Q  157 taaaatgtcctatgtttattttgtaacaagttggcaatattagagttaatgtaata-nnnnnnnatctcgcgataaaccgcatcaaccgaaccaatccaa 255  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||         ||||||||||||||||    
T  10174249 taaaatgtcatatgtttattttgtaacaagttggcaatattagagttaatgtaatattttttttatctcgcgata---------aaccgaaccaatccaa 10174159  T
Q  256 accgcattggtttggtgtgaatgactttttaaa 288  Q
    |||||||||||||||| || || ||||||||||    
T  10174158 accgcattggtttggtttggataactttttaaa 10174126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 185 - 379
Target Start/End: Original strand, 667551 - 667748
Alignment:
Q  185 agttggcaatattagagttaatgtaatannnnnnn--atctcgcgataaaccgcatcaaccgaaccaatccaaaccgcattggtttggtgtgaatgactt 282  Q
    |||||||||||||||||||||||||||          ||||||||||  || |||||||| |||||||||||||||||||||||||||| || |||||||    
T  667551 agttggcaatattagagttaatgtaatttttttatttatctcgcgatttactgcatcaactgaaccaatccaaaccgcattggtttggtttggatgactt 667650  T
Q  283 ttt-aaattcaatcgaaccaattcataccacatgcttctttatctcgcgatttggatgacttttatgctcaaaatcgaatcaaaccgtaccacgaaca 379  Q
    ||| ||| |||| ||||||||  || |||  ||| || | | ||||||| ||||||||| | |||||||  ||| |||| ||||||| ||| ||||||    
T  667651 tttaaaaatcaaccgaaccaaaccaaaccgtatgtttttctctctcgcggtttggatgattattatgcttgaaaccgaaccaaaccgcaccgcgaaca 667748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 185 - 271
Target Start/End: Complemental strand, 15068616 - 15068528
Alignment:
Q  185 agttggcaatattagagttaatgtaatannnnnnn--atctcgcgataaaccgcatcaaccgaaccaatccaaaccgcattggtttggt 271  Q
    |||||||||||||||||||||||||||          |||||||||| |||||||||||| ||||||||||||||||||||||||||||    
T  15068616 agttggcaatattagagttaatgtaatttttttatttatctcgcgattaaccgcatcaactgaaccaatccaaaccgcattggtttggt 15068528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 220 - 271
Target Start/End: Complemental strand, 8409109 - 8409058
Alignment:
Q  220 atctcgcgataaaccgcatcaaccgaaccaatccaaaccgcattggtttggt 271  Q
    |||||||||| |||||||||||| ||||||||||||||||||||||||||||    
T  8409109 atctcgcgattaaccgcatcaactgaaccaatccaaaccgcattggtttggt 8409058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 220 - 271
Target Start/End: Complemental strand, 11917524 - 11917473
Alignment:
Q  220 atctcgcgataaaccgcatcaaccgaaccaatccaaaccgcattggtttggt 271  Q
    |||||||||| |||||||||||| ||||||||||||||||||||||||||||    
T  11917524 atctcgcgattaaccgcatcaactgaaccaatccaaaccgcattggtttggt 11917473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 220 - 271
Target Start/End: Complemental strand, 701339 - 701288
Alignment:
Q  220 atctcgcgataaaccgcatcaaccgaaccaatccaaaccgcattggtttggt 271  Q
    |||||||||| |||||||||||| ||||||||||||||||||||| ||||||    
T  701339 atctcgcgattaaccgcatcaactgaaccaatccaaaccgcattgatttggt 701288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 157 - 204
Target Start/End: Complemental strand, 23780910 - 23780863
Alignment:
Q  157 taaaatgtcctatgtttattttgtaacaagttggcaatattagagtta 204  Q
    ||||||||||||||||||||| ||||||||||||||||||| ||||||    
T  23780910 taaaatgtcctatgtttatttggtaacaagttggcaatatttgagtta 23780863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 157 - 204
Target Start/End: Complemental strand, 23867863 - 23867816
Alignment:
Q  157 taaaatgtcctatgtttattttgtaacaagttggcaatattagagtta 204  Q
    ||||||||||||||||||||| ||||||||||||||||||| ||||||    
T  23867863 taaaatgtcctatgtttatttggtaacaagttggcaatatttgagtta 23867816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 313 - 379
Target Start/End: Complemental strand, 23780839 - 23780773
Alignment:
Q  313 atgcttctttatctcgcgatttggatgacttttatgctcaaaatcgaatcaaaccgtaccacgaaca 379  Q
    |||||| ||||||||||| ||||||||||||||||||| |||| |||| ||||||| ||| ||||||    
T  23780839 atgcttttttatctcgcggtttggatgacttttatgcttaaaaccgaaccaaaccgcaccgcgaaca 23780773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 313 - 379
Target Start/End: Complemental strand, 23867792 - 23867726
Alignment:
Q  313 atgcttctttatctcgcgatttggatgacttttatgctcaaaatcgaatcaaaccgtaccacgaaca 379  Q
    |||||| ||||||||||| ||||||||||||||||||| |||| |||| ||||||| ||| ||||||    
T  23867792 atgcttttttatctcgcggtttggatgacttttatgcttaaaaccgaaccaaaccgcaccgcgaaca 23867726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 230 - 277
Target Start/End: Complemental strand, 36567820 - 36567773
Alignment:
Q  230 aaaccgcatcaaccgaaccaatccaaaccgcattggtttggtgtgaat 277  Q
    |||| ||| ||||||| ||||||||||||||||||||||||| |||||    
T  36567820 aaactgcaccaaccgatccaatccaaaccgcattggtttggtttgaat 36567773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 368
Target Start/End: Complemental strand, 701287 - 701179
Alignment:
Q  262 ttggtttggtgtgaatgacttttt--aaattcaatcgaaccaattcataccacatgcttctttatctcgcgatttggatgacttttatgctcaaaatcga 359  Q
    |||||||||| || ||||||||||  ||| |||| ||||||||  || |||||||| || ||| ||||||| ||||||||| | |||||||  ||| |||    
T  701287 ttggtttggtttggatgactttttaaaaaatcaaccgaaccaaaccaaaccacatgtttttttctctcgcggtttggatgattattatgcttgaaaccga 701188  T
Q  360 atcaaaccg 368  Q
    | |||||||    
T  701187 accaaaccg 701179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 271
Target Start/End: Complemental strand, 1681224 - 1681183
Alignment:
Q  230 aaaccgcatcaaccgaaccaatccaaaccgcattggtttggt 271  Q
    |||||||| |||||||||||||||||| | ||||||||||||    
T  1681224 aaaccgcaacaaccgaaccaatccaaagctcattggtttggt 1681183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 271
Target Start/End: Original strand, 27572019 - 27572060
Alignment:
Q  230 aaaccgcatcaaccgaaccaatccaaaccgcattggtttggt 271  Q
    |||||||| ||||||| |||| ||||||||||||||||||||    
T  27572019 aaaccgcaccaaccgatccaacccaaaccgcattggtttggt 27572060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 271
Target Start/End: Complemental strand, 41454972 - 41454931
Alignment:
Q  230 aaaccgcatcaaccgaaccaatccaaaccgcattggtttggt 271  Q
    |||||||| |||| || |||||||||||||||||||||||||    
T  41454972 aaaccgcaccaacagatccaatccaaaccgcattggtttggt 41454931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 276 - 379
Target Start/End: Complemental strand, 11917458 - 11917354
Alignment:
Q  276 atgacttttt-aaattcaatcgaaccaattcataccacatgcttctttatctcgcgatttggatgacttttatgctcaaaatcgaatcaaaccgtaccac 374  Q
    |||||||||| ||| |||| ||||||||  || ||| ||||||| ||| ||||||| ||||||||| | |||||||  ||| |||| ||||||| ||| |    
T  11917458 atgactttttaaaaatcaaccgaaccaaaccaaaccgcatgcttttttctctcgcggtttggatgattattatgcttgaaaccgaaccaaaccgcaccgc 11917359  T
Q  375 gaaca 379  Q
    |||||    
T  11917358 gaaca 11917354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 276 - 379
Target Start/End: Complemental strand, 15068513 - 15068409
Alignment:
Q  276 atgacttttt-aaattcaatcgaaccaattcataccacatgcttctttatctcgcgatttggatgacttttatgctcaaaatcgaatcaaaccgtaccac 374  Q
    |||||||||| ||| |||| ||||||||  || | | ||||||| ||| ||||||| ||||||||| | ||||||| |||| |||| ||||||| ||| |    
T  15068513 atgactttttaaaaatcaaccgaaccaaaccaaatcgcatgcttttttctctcgcggtttggatgattattatgcttaaaaccgaaccaaaccgcaccgc 15068414  T
Q  375 gaaca 379  Q
    |||||    
T  15068413 gaaca 15068409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 107; Significance: 2e-53; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 157 - 368
Target Start/End: Original strand, 6004299 - 6004510
Alignment:
Q  157 taaaatgtcctatgtttattttgtaacaagttggcaatattagagttaatgtaatannnnnnnatctcgcgataaaccgcatcaaccgaaccaatccaaa 256  Q
    ||||||| |||||||||||||||||| |||||||||||||||||||||||||||||       ||||||||||||||||||  ||||||| |||||||||    
T  6004299 taaaatgccctatgtttattttgtaataagttggcaatattagagttaatgtaatatttttt-atctcgcgataaaccgcacaaaccgaatcaatccaaa 6004397  T
Q  257 ccgcattggtttggtgtgaatgacttttt-aaattcaatcgaaccaattcataccacatgcttctttatctcgcgatttggatgacttttatgctcaaaa 355  Q
    ||||||||||||||| || |||||||||| ||| |||| ||||||||  || ||| ||||||| ||||||||||| ||||||||||||||||||| ||||    
T  6004398 ccgcattggtttggtttggatgactttttaaaaatcaaccgaaccaaaccaaaccgcatgcttttttatctcgcggtttggatgacttttatgctgaaaa 6004497  T
Q  356 tcgaatcaaaccg 368  Q
     |||| |||||||    
T  6004498 ccgaaccaaaccg 6004510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 157 - 385
Target Start/End: Complemental strand, 32880473 - 32880243
Alignment:
Q  157 taaaatgtcctatgtttattttgtaacaagttggcaatattagagttaatgtaatannnnnnn-atctcgcgataaaccgcatcaaccgaaccaatccaa 255  Q
    |||||||||||||||||||||| |||||||||| ||||||||||||||||||||||        ||||||||||||||||||  |||||||||||| |||    
T  32880473 taaaatgtcctatgtttattttataacaagttgacaatattagagttaatgtaatattttttttatctcgcgataaaccgcacaaaccgaaccaattcaa 32880374  T
Q  256 accgcattggtttggtgtgaatgactttttaaat-tcaatcgaaccaattcataccacatgcttctttatctcgcgatttggatgacttttatgctcaaa 354  Q
    |||| ||||||||||| || |||||||||||||  |||| |||||||| ||| ||||||||||| ||||||||||| |||||| ||||||||||||||||    
T  32880373 accgtattggtttggtttgtatgactttttaaaaatcaaccgaaccaaatcaaaccacatgcttttttatctcgcggtttggaggacttttatgctcaaa 32880274  T
Q  355 atcgaatcaaaccgtaccacgaacattccta 385  Q
      |||| ||||||| ||| | |||| |||||    
T  32880273 gccgaaccaaaccgcaccgcaaacactccta 32880243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 34 - 379
Target Start/End: Original strand, 9827569 - 9827912
Alignment:
Q  34 tttatgacataggtaatacatgactatattaaagcaaaataatatattgttgatattgaaaataaaagcttaggatctatgcagttcatgtatatatagt 133  Q
    ||||||| |||  |||||||||||||||||||  || || |||||||||||| ||||||||||||| | ||| |||||||||| ||||||||||| ||      
T  9827569 tttatgatatacataatacatgactatattaagtcagaacaatatattgttggtattgaaaataaatgtttaagatctatgcaattcatgtatattta-- 9827666  T
Q  134 catattttatcatgtnnnnnnnn---taaaatgtcctatgtttattttgtaacaagttggcaatattagagttaatgtaatannnnnnnatctcgcgata 230  Q
      |||| ||||||||           ||||||||||||||||||||||||| |||||| ||||||||||||||||||||||        |||||||||||    
T  9827667 --tattatatcatgtaaacaacaaaataaaatgtcctatgtttattttgtatcaagttcgcaatattagagttaatgtaat--ttttttatctcgcgata 9827762  T
Q  231 aaccgcatcaaccgaaccaatccaaaccgcattggtttggtgtgaatgactttttaaat-tcaatcgaaccaattcataccacatgcttctttatctcgc 329  Q
    ||||||| |||| |||||||||||| ||| ||||||||||| || |||||||||||||  |||| | |||||| |||   | |||||||  ||||||||     
T  9827763 aaccgcaccaactgaaccaatccaagccgtattggtttggtttggatgactttttaaaaatcaacctaaccaaatcaagtcgcatgcttaattatctcgt 9827862  T
Q  330 gatttggatgacttttatgctcaaaatcgaatcaaaccgtaccacgaaca 379  Q
    | ||||||||||||||||||| |||| |||| ||| ||| ||| ||||||    
T  9827863 ggtttggatgacttttatgcttaaaaccgaaccaagccgcaccgcgaaca 9827912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 172 - 368
Target Start/End: Original strand, 50562496 - 50562693
Alignment:
Q  172 ttattttgtaacaagttggcaatattagagttaatgtaatannnnnnnatctcgcgataaaccgcatcaaccgaaccaatccaaaccgcattggtttggt 271  Q
    ||||||||||| |||||||||||||||||||||||||||||       ||||||||||||||||||  |||||||||||||||| ||| ||||||||| |    
T  50562496 ttattttgtaataagttggcaatattagagttaatgtaatatttttttatctcgcgataaaccgcacaaaccgaaccaatccaagccgaattggtttgat 50562595  T
Q  272 gtgaatgacttttt-aaattcaatcgaaccaattcataccacatgcttctttatctcgcgatttggatgacttttatgctcaaaatcgaatcaaaccg 368  Q
      | |||| ||||| ||| |||| ||||||||  || ||||||||||| |||||||||   ||| ||||||||||||||| ||||||||| |||||||    
T  50562596 tgggatgaatttttaaaaatcaaccgaaccaaaccaaaccacatgcttttttatctcgtagtttagatgacttttatgcttaaaatcgaaccaaaccg 50562693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 157 - 366
Target Start/End: Original strand, 21586752 - 21586964
Alignment:
Q  157 taaaatgtcctatgtttattttgtaacaagttggcaata-ttagagttaatgtaa-tannnnnnnatctcgcgataaaccgcatcaaccgaaccaatcca 254  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |        |||||||||||||| |||  |||||||||||||||    
T  21586752 taaaatgtcctatgtttattttgtaacaagttggcaatatttagagttaatgtaattttttttttatctcgcgataaactgcacaaaccgaaccaatcca 21586851  T
Q  255 aaccgcattggtttggtgtgaatgacttttt-aaattcaatcgaaccaattcataccacatgcttctttatctcgcgatttggatgacttttatgctcaa 353  Q
    | | ||||||||||||| || |||||||||| ||| ||||  ||| |||  || ||  ||||||| ||||||||||| ||||||||||||||| ||||||    
T  21586852 agctgcattggtttggtttggatgactttttaaaaatcaactgaatcaaaccaaactgcatgcttttttatctcgcggtttggatgacttttaagctcaa 21586951  T
Q  354 aatcgaatcaaac 366  Q
    || |||| |||||    
T  21586952 aaccgaaccaaac 21586964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 185 - 379
Target Start/End: Complemental strand, 34794739 - 34794543
Alignment:
Q  185 agttggcaatattagagttaatgtaatannnnnnn-atctcgcgataaaccgcatcaaccgaaccaatccaaaccgcattggtttggtgtgaatgacttt 283  Q
    |||||||||||||||||||||||||||         |||||||||| |||||||||||| |||||||||||||||||||||||||||| || ||||||||    
T  34794739 agttggcaatattagagttaatgtaattttttatttatctcgcgattaaccgcatcaactgaaccaatccaaaccgcattggtttggtttggatgacttt 34794640  T
Q  284 tt-aaattcaatcgaaccaattcataccacatgcttctttatctcgcgatttggatgacttttatgctcaaaatcgaatcaaaccgtaccacgaaca 379  Q
    || ||| |||| ||||||||  || | | ||||||| ||| ||||||| ||||||||| | |||||||  ||| |||| ||||||| ||| ||||||    
T  34794639 ttaaaaatcaaccgaaccaaaccaaatcgcatgcttttttctctcgcggtttggatgattattatgcttgaaaccgaaccaaaccgcaccgcgaaca 34794543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 157 - 366
Target Start/End: Original strand, 35532063 - 35532257
Alignment:
Q  157 taaaatgtcctatgtttattttgtaacaagttggcaatattagagttaatgtaatannnnnnnatctcgcgataaaccgcatcaaccgaaccaatccaaa 256  Q
    ||||||||| |||||||||||||||| |||||||||||||||||||||||| ||||       ||||||||||||||||||  |||| || ||||||||     
T  35532063 taaaatgtcttatgtttattttgtaataagttggcaatattagagttaatgaaata-ttttttatctcgcgataaaccgcacaaaccaaatcaatccaat 35532161  T
Q  257 ccgcattggtttggtgtgaatgactttttaaattcaatcgaaccaattcataccacatgcttctttatctcgcgatttggatgacttttatgctcaaaat 356  Q
    ||||||||||||||     |||| ||||||||   |||| ||||||     ||| ||||||| |||||||||| |||||||||||||||||||||||||     
T  35532162 ccgcattggtttgg-----atgaatttttaaa---aatc-aaccaa-----accgcatgcttttttatctcgcaatttggatgacttttatgctcaaaac 35532247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 185 - 379
Target Start/End: Original strand, 51149594 - 51149791
Alignment:
Q  185 agttggcaatattagagttaatgtaatannnnnnn--atctcgcgataaaccgcatcaaccgaaccaatccaaaccgcattggtttggtgtgaatgactt 282  Q
    |||||||||||||||||||||||||||          |||||||||| |||||||||||| |||||||||||||||||||||||||||| || || ||||    
T  51149594 agttggcaatattagagttaatgtaatttttttatttatctcgcgattaaccgcatcaactgaaccaatccaaaccgcattggtttggtttggatcactt 51149693  T
Q  283 ttt-aaattcaatcgaaccaattcataccacatgcttctttatctcgcgatttggatgacttttatgctcaaaatcgaatcaaaccgtaccacgaaca 379  Q
    ||| ||| |||| ||||||||  || ||| ||||||| ||| ||||||| ||||||||| | |||||||  ||| |||| ||||||| ||| ||||||    
T  51149694 tttaaaaatcaaccgaaccaaaccaaaccgcatgcttttttctctcgcggtttggatgattattatgcttgaaaccgaaccaaaccgcaccgcgaaca 51149791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 185 - 379
Target Start/End: Original strand, 35402137 - 35402339
Alignment:
Q  185 agttggcaatattagagttaatgtaatannnnnnn--atctcgcgataaaccgcatcaaccgaaccaatccaaaccgcattggtttggtgtga-----at 277  Q
    |||||||||||||||||||||||||||          |||||||||| |||||||||||| |||||||||||||||||||||||||||| ||      ||    
T  35402137 agttggcaatattagagttaatgtaatttttttatttatctcgcgattaaccgcatcaactgaaccaatccaaaccgcattggtttggtttggtttggat 35402236  T
Q  278 gactttttaaat-tcaatcgaaccaattcataccacatgcttctttatctcgcgatttggatgacttttatgctcaaaatcgaatcaaaccgtaccacga 376  Q
    |||||||||||  |||| ||||||||  || ||| |||| || ||| ||||||||||||||||| | |||||||  ||| |||| ||||||| ||| |||    
T  35402237 gactttttaaaaatcaaccgaaccaaaccaaaccgcatgtttttttctctcgcgatttggatgattattatgcttgaaaccgaaccaaaccgcaccgcga 35402336  T
Q  377 aca 379  Q
    |||    
T  35402337 aca 35402339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 158 - 271
Target Start/End: Complemental strand, 43030601 - 43030489
Alignment:
Q  158 aaaatgtcctatgtttattttgtaacaagttggcaatattagagttaatgtaatannnnnnnatctcgcgataaaccgcatcaaccgaaccaatccaaac 257  Q
    |||||||| ||||||||||||||||||| |||||||||||  |||||||||||||       ||||||||||||||| ||  |||||||||||| |||||    
T  43030601 aaaatgtcttatgtttattttgtaacaaattggcaatattgtagttaatgtaata-ttttttatctcgcgataaaccacacaaaccgaaccaattcaaac 43030503  T
Q  258 cgcattggtttggt 271  Q
     |||||||||||||    
T  43030502 tgcattggtttggt 43030489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 157 - 367
Target Start/End: Complemental strand, 39098115 - 39097906
Alignment:
Q  157 taaaatgtcctatgtttattttgtaacaagttggcaatattagagttaatgtaatannnnnnnatctcgcgataaaccgcatcaaccgaaccaatccaaa 256  Q
    ||||||||| ||||||||||||||||||||||| |||| ||| ||||| |||||||       |||||||||||||| | |  | ||||||||||||||     
T  39098115 taaaatgtcatatgtttattttgtaacaagttgccaatgttaaagttattgtaatatttttttatctcgcgataaactgtacaacccgaaccaatccaat 39098016  T
Q  257 ccgcattggtttggtgtgaatgacttttt-aaattcaatcgaaccaattcataccacatgcttctttatctc----gcgatttggatgacttttatgctc 351  Q
      ||||||||||||     | |||||||| ||| ||||  ||||||| ||| ||| |||| || ||||||||    ||  ||||||||||||||||||||    
T  39098015 atgcattggtttgg-----acgactttttaaaaatcaactgaaccaaatcaaaccgcatg-ttttttatctcgcatgcagtttggatgacttttatgctc 39097922  T
Q  352 aaaatcgaatcaaacc 367  Q
    ||||||||| ||||||    
T  39097921 aaaatcgaaccaaacc 39097906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 185 - 271
Target Start/End: Original strand, 4669574 - 4669662
Alignment:
Q  185 agttggcaatattagagttaatgtaatannnnnnn--atctcgcgataaaccgcatcaaccgaaccaatccaaaccgcattggtttggt 271  Q
    |||||||||||||||||||||||||||          |||||||||| |||||||||||| ||||||||||||||||||||||||||||    
T  4669574 agttggcaatattagagttaatgtaatttttttatttatctcgcgattaaccgcatcaactgaaccaatccaaaccgcattggtttggt 4669662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 185 - 271
Target Start/End: Complemental strand, 33361109 - 33361021
Alignment:
Q  185 agttggcaatattagagttaatgtaatannnnnnn--atctcgcgataaaccgcatcaaccgaaccaatccaaaccgcattggtttggt 271  Q
    |||||||||||||||||||||||||||          |||||||||| |||||||||||| ||||||||||||||||||||||||||||    
T  33361109 agttggcaatattagagttaatgtaatttttttatttatctcgcgattaaccgcatcaactgaaccaatccaaaccgcattggtttggt 33361021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 220 - 271
Target Start/End: Complemental strand, 10369330 - 10369279
Alignment:
Q  220 atctcgcgataaaccgcatcaaccgaaccaatccaaaccgcattggtttggt 271  Q
    |||||||||| |||||||||||| ||||||||||||||||||||||||||||    
T  10369330 atctcgcgattaaccgcatcaactgaaccaatccaaaccgcattggtttggt 10369279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 157 - 208
Target Start/End: Original strand, 27642074 - 27642125
Alignment:
Q  157 taaaatgtcctatgtttattttgtaacaagttggcaatattagagttaatgt 208  Q
    ||||||||||||||| ||||||||||||||||| ||||||||||||||||||    
T  27642074 taaaatgtcctatgtctattttgtaacaagttgacaatattagagttaatgt 27642125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 157 - 208
Target Start/End: Complemental strand, 33002694 - 33002643
Alignment:
Q  157 taaaatgtcctatgtttattttgtaacaagttggcaatattagagttaatgt 208  Q
    |||||| |||| ||||||||||||||||||||| ||||||||||||||||||    
T  33002694 taaaatatcctgtgtttattttgtaacaagttgacaatattagagttaatgt 33002643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 244 - 328
Target Start/End: Original strand, 48032847 - 48032931
Alignment:
Q  244 gaaccaatccaaaccgcattggtttggtgtgaatgacttttt-aaattcaatcgaaccaattcataccacatgcttctttatctcg 328  Q
    |||||||||||||||||||||||||||| || |||| ||||| ||| |||| ||||||||  || ||| ||||||| |||||||||    
T  48032847 gaaccaatccaaaccgcattggtttggtttggatgaatttttaaaaatcaaccgaaccaa-ccaaaccgcatgcttttttatctcg 48032931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 230 - 271
Target Start/End: Complemental strand, 51191808 - 51191767
Alignment:
Q  230 aaaccgcatcaaccgaaccaatccaaaccgcattggtttggt 271  Q
    |||||||| |||||||||||||||||||||||| ||||||||    
T  51191808 aaaccgcaacaaccgaaccaatccaaaccgcatcggtttggt 51191767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 221 - 271
Target Start/End: Complemental strand, 20038497 - 20038447
Alignment:
Q  221 tctcgcgataaaccgcatcaaccgaaccaatccaaaccgcattggtttggt 271  Q
    |||||| | |||||||| |||  ||||||||||||||||||||||||||||    
T  20038497 tctcgcaaaaaaccgcaacaattgaaccaatccaaaccgcattggtttggt 20038447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 271
Target Start/End: Original strand, 38651973 - 38652014
Alignment:
Q  230 aaaccgcatcaaccgaaccaatccaaaccgcattggtttggt 271  Q
    |||||||||||||||| |||| |||||||||||| |||||||    
T  38651973 aaaccgcatcaaccgatccaacccaaaccgcattagtttggt 38652014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 230 - 270
Target Start/End: Original strand, 17144704 - 17144744
Alignment:
Q  230 aaaccgcatcaaccgaaccaatccaaaccgcattggtttgg 270  Q
    |||||||||||||||| |||| ||||||| |||||||||||    
T  17144704 aaaccgcatcaaccgatccaacccaaaccacattggtttgg 17144744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 310 - 374
Target Start/End: Complemental strand, 35142917 - 35142853
Alignment:
Q  310 cacatgcttctttatctcgcgatttggatgacttttatgctcaaaatcgaatcaaaccgtaccac 374  Q
    ||||||||||||||||||||| || | || || ||||  |||||||| ||||||||| |||||||    
T  35142917 cacatgcttctttatctcgcggttcgaataacatttagcctcaaaattgaatcaaactgtaccac 35142853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 276 - 379
Target Start/End: Complemental strand, 43030469 - 43030365
Alignment:
Q  276 atgactttttaaat-tcaatcgaaccaattcataccacatgcttctttatctcgcgatttggatgacttttatgctcaaaatcgaatcaaaccgtaccac 374  Q
    |||||||||||||  |||| ||||||||  || ||  ||| ||| ||||||| |||||| | |||||||||||||||||||   |||||||||| ||| |    
T  43030469 atgactttttaaaaatcaaccgaaccaaaccaaactgcatacttttttatcttgcgattcgcatgacttttatgctcaaaactaaatcaaaccgcaccgc 43030370  T
Q  375 gaaca 379  Q
    |||||    
T  43030369 gaaca 43030365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 106; Significance: 6e-53; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 157 - 379
Target Start/End: Original strand, 69441 - 69674
Alignment:
Q  157 taaaatgtcctatgtttattttgtaacaagttggcaatattagagttaatgtaatannnnnnnatctcgcgataaaccgcatcaaccgaaccaatccaaa 256  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||       ||||||||||||||||||| ||||||||||||||||     
T  69441 taaaatgtcctatgtttattttgtaacaagttggcaatattagagttaatataatatttttttatctcgcgataaaccgcataaaccgaaccaatccaag 69540  T
Q  257 ccgca----------ttggtttggtgtgaatgacttttt-aaattcaatcgaaccaattcataccacatgcttctttatctcgcgatttggatgactttt 345  Q
    || ||          |||||||||| || |||||||||| ||| |||| ||||||||  || ||||||||||| ||||||||||| ||||||||||||||    
T  69541 ccacattgatttggtttggtttggtttggatgactttttaaaaatcaaccgaaccaaaccaaaccacatgcttttttatctcgcggtttggatgactttt 69640  T
Q  346 atgctcaaaatcgaatcaaaccgtaccacgaaca 379  Q
    ||||||||||||||| ||||||| ||| ||||||    
T  69641 atgctcaaaatcgaaccaaaccgcaccgcgaaca 69674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 98; Significance: 4e-48; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 157 - 379
Target Start/End: Original strand, 35040127 - 35040344
Alignment:
Q  157 taaaatgtcctatgtttattttgtaacaagttggcaatattagagttaatgtaatannnnnnnatctcgcgataaaccgcatcaaccgaaccaatccaaa 256  Q
    ||||||| |||||||||||||||||| ||||||||||||||||||| |||||||||       ||||||||||||||||||  |||||||||||||||||    
T  35040127 taaaatgccctatgtttattttgtaataagttggcaatattagagtcaatgtaatatttttt-atctcgcgataaaccgcacaaaccgaaccaatccaaa 35040225  T
Q  257 ccgcattggtttggtgtgaatgactttttaaat-tcaatcgaaccaattcataccacatgcttctttatctcgcgatttggatgacttttatgctcaaaa 355  Q
    ||||||||||||||     |||||||||||||  |||| | ||||||  || ||| ||||||| ||||||||||| ||||||||||||||||||||||||    
T  35040226 ccgcattggtttgg-----atgactttttaaaaatcaaccaaaccaaaccaaaccgcatgcttttttatctcgcggtttggatgacttttatgctcaaaa 35040320  T
Q  356 tcgaatcaaaccgtaccacgaaca 379  Q
     |||| ||||||| ||| ||||||    
T  35040321 ccgaaccaaaccgcaccgcgaaca 35040344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 157 - 379
Target Start/End: Complemental strand, 15859905 - 15859674
Alignment:
Q  157 taaaatgtcctatgtttattttgtaacaagttggcaatattagagttaatgtaatannnnnnnatctcgcgataaaccgcatcaaccgaaccaatccaaa 256  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||       ||||||||||||||||||  |||||||||||||||||    
T  15859905 taaaatgtcctatgtttattttctaacaagttggcaatattagagttaatgtaatattttttcatctcgcgataaaccgcacaaaccgaaccaatccaaa 15859806  T
Q  257 ccgcattggtttggtg--------tgaatgact-ttttaaattcaatcgaaccaattcataccacatgcttctttatctcgcgatttggatgacttttat 347  Q
    ||||||||||||||||        || |||||| ||| ||| |||| |||| |||  || ||| ||||||| || |||||||| |||||| |||||||||    
T  15859805 ccgcattggtttggtggtttggtttggatgactatttaaaaatcaaccgaatcaaaccaaaccgcatgctttttaatctcgcggtttggaagacttttat 15859706  T
Q  348 gctcaaaatcgaatcaaaccgtaccacgaaca 379  Q
    |||||||| |||| ||||| | ||| ||||||    
T  15859705 gctcaaaaccgaaccaaacggcaccgcgaaca 15859674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 157 - 368
Target Start/End: Complemental strand, 10591026 - 10590810
Alignment:
Q  157 taaaatgtcctatgtttattttgta-acaagttggcaatattagagttaatgtaatannnnnnn---atctcgcgataaaccgcatcaaccgaaccaatc 252  Q
    ||||||||| ||||||||||||||| | |||||||||||||||||||||||||||||          |||||| |||||||||||  |||||||||||||    
T  10591026 taaaatgtcatatgtttattttgtatataagttggcaatattagagttaatgtaatattttttttttatctcgtgataaaccgcacaaaccgaaccaatc 10590927  T
Q  253 caaaccgcattggtttggtgtgaatgacttttt-aaattcaatcgaaccaattcataccacatgcttctttatctcgcgatttggatgacttttatgctc 351  Q
    ||| |||||||||||||||  | |||||||||| ||| |||| ||||||||  || ||| ||||||| ||||||||||  ||||||||||||||||||||    
T  10590926 caagccgcattggtttggttgggatgactttttaaaaatcaaccgaaccaaaccaaaccgcatgcttttttatctcgcagtttggatgacttttatgctc 10590827  T
Q  352 aaaatcgaatcaaaccg 368  Q
    |||| |||| |||||||    
T  10590826 aaaaccgaaccaaaccg 10590810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 157 - 367
Target Start/End: Original strand, 10390932 - 10391144
Alignment:
Q  157 taaaatgtcctatgtttattttgtaacaagttggcaatattagagttaatgtaatannnnnnnatctcgcgataaaccgcatcaaccgaaccaatccaaa 256  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||       |||||| |||||||||||  | ||||||||||||||     
T  10390932 taaaatgtcttatgtttattttgtaacaagttggcaatattagagttaatgtaatatttttttatctcgtgataaaccgcacaagccgaaccaatccaag 10391031  T
Q  257 ccgcattggtttggtgtgaatgactttttaa--attcaatcgaaccaattcataccacatgcttctttatctcgcgatttggatgacttttatgctcaaa 354  Q
    || | |||||||||| || |||||||||| |  | ||||  |||||||  || ||  ||||||| ||||||||||| || | ||||||||||||||||||    
T  10391032 ccacgttggtttggtttggatgacttttttagaaatcaagtgaaccaaaccaaacagcatgcttttttatctcgcggttcgaatgacttttatgctcaaa 10391131  T
Q  355 atcgaatcaaacc 367  Q
    | |||| ||||||    
T  10391132 accgaaccaaacc 10391144  T

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Target: chr6; HSP #5
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 157 - 368
Target Start/End: Original strand, 10494281 - 10494504
Alignment:
Q  157 taaaatgtcctatgtttattttgtaacaagttggcaatattagagttaatgtaatannnnnnn-atctcgcgataaaccgcatcaaccgaaccaatccaa 255  Q
    |||||| ||||||||||||||||||| ||||||||||||||| ||||||||||| |        ||||||||||||||||||||||||||||||||| ||    
T  10494281 taaaatttcctatgtttattttgtaataagttggcaatattatagttaatgtaaaaaaaaaattatctcgcgataaaccgcatcaaccgaaccaatctaa 10494380  T
Q  256 accgcattggtttggtgtga----------atgactttttaaat-tcaatcgaaccaattcataccacatgcttctttatctcgcgatttggatgacttt 344  Q
     |||||||||||| || ||           |||||||||||||  |||| |||||||| ||| ||| ||||||| ||||||||||| |||||||||||||    
T  10494381 gccgcattggtttagtttggtttagtttggatgactttttaaaaatcaaccgaaccaaatcaaaccccatgcttttttatctcgcggtttggatgacttt 10494480  T
Q  345 tatgctcaaaatcgaatcaaaccg 368  Q
    ||||||||||| | || |||||||    
T  10494481 tatgctcaaaaccaaaccaaaccg 10494504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 157 - 379
Target Start/End: Original strand, 5287814 - 5288038
Alignment:
Q  157 taaaatgtcctatgtttattttgtaacaagttggcaatattagagttaatgtaatannnnnnn-atctcgcgataaaccgcatcaaccgaaccaatccaa 255  Q
    ||||||| | |||||||||||||| | ||||||||||||||||||||||||||||         |||| |||||||||||||  ||||||||||||||||    
T  5287814 taaaatgacatatgtttattttgttataagttggcaatattagagttaatgtaattttttttttatcttgcgataaaccgcactaaccgaaccaatccaa 5287913  T
Q  256 accgcattggtttggtgtgaatgacttttt-aaattcaatcgaaccaattcataccacatgcttctttatctcgcgatttggatgacttttatgctcaaa 354  Q
     ||| |||||||| || || |||||||||| ||| |||| ||||||||  || ||  |||| || ||||||||||  ||||||||||||  |||||||||    
T  5287914 gccgtattggtttcgtttggatgactttttaaaaatcaaccgaaccaaaccaaactgcatgtttatttatctcgcagtttggatgacttaaatgctcaaa 5288013  T
Q  355 atcgaatcaaaccgtaccacgaaca 379  Q
    | |||| ||||||| ||| ||||||    
T  5288014 accgaaccaaaccgcaccgcgaaca 5288038  T

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Target: chr6; HSP #7
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 185 - 379
Target Start/End: Complemental strand, 12270702 - 12270505
Alignment:
Q  185 agttggcaatattagagttaatgtaatannnnnnn--atctcgcgataaaccgcatcaaccgaaccaatccaaaccgcattggtttggtgtgaatgactt 282  Q
    |||||||||||||||||||||||||||          |||||||||| |||||||||||| |||||||||||||||||||||||||||| || |||||||    
T  12270702 agttggcaatattagagttaatgtaatttttttatttatctcgcgattaaccgcatcaactgaaccaatccaaaccgcattggtttggtttggatgactt 12270603  T
Q  283 ttt-aaattcaatcgaaccaattcataccacatgcttctttatctcgcgatttggatgacttttatgctcaaaatcgaatcaaaccgtaccacgaaca 379  Q
    ||| ||| |||| ||||||||  || ||| ||||||| ||| ||||||| ||||||||| | ||||| |  ||| |||| ||||||| ||| ||||||    
T  12270602 tttaaaaatcaaccgaaccaaaccaaaccgcatgcttttttctctcgcggtttggatgattattatgtttgaaaccgaaccaaaccgcaccgcgaaca 12270505  T

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Target: chr6; HSP #8
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 157 - 271
Target Start/End: Original strand, 13801883 - 13801997
Alignment:
Q  157 taaaatgtcctatgtttattttgtaacaagttggcaatattagagttaatgtaatannnnnnnatctcgcgataaaccgcatcaaccgaaccaatccaaa 256  Q
    |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||       ||||| || ||||||||   |||||||||||||||||    
T  13801883 taaaatgttctatgtttattttgtaacaaattggcaatattagagttaatgtaatatttttttatctcacgctaaaccgctcaaaccgaaccaatccaaa 13801982  T
Q  257 ccgcattggtttggt 271  Q
    |||||||||||||||    
T  13801983 ccgcattggtttggt 13801997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 157 - 368
Target Start/End: Complemental strand, 25136948 - 25136731
Alignment:
Q  157 taaaatgtcctatgtttattttgtaacaagttggcaatattagagttaatgtaatannnnnnnatctcgcgataaaccgcatcaaccgaaccaatccaaa 256  Q
    ||||||||||||||||| ||||||||||||||| |||||||||||||||||| |||       |||| |||||||||||||  ||||||||||||| |||    
T  25136948 taaaatgtcctatgtttgttttgtaacaagttgacaatattagagttaatgtcatatttttatatcttgcgataaaccgcacaaaccgaaccaatctaaa 25136849  T
Q  257 ccgcattggtttggtgtga-----atgactttttaaattc-aatcgaaccaattcataccacatgcttctttatctcgcgatttggatgacttttatgct 350  Q
    | ||||||||||||| ||      ||||||||||||| || || ||||||||  |  ||| ||||||| ||||| || |  ||||||| |||| ||||||    
T  25136848 ctgcattggtttggtttggtttggatgactttttaaaatccaaccgaaccaaaccgaaccgcatgcttttttatttcactgtttggatcacttgtatgct 25136749  T
Q  351 caaaatcgaatcaaaccg 368  Q
    ||||| |||| |||||||    
T  25136748 caaaaccgaaccaaaccg 25136731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 161 - 368
Target Start/End: Complemental strand, 33550496 - 33550279
Alignment:
Q  161 atgtcctatgtttattttgtaacaagttggcaatattagagttaatgtaatannnnnnnatctcgcgataaaccgcatcaaccgaaccaatccaaaccgc 260  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||       ||| ||||||||||||||  || |||| |||||||||||||    
T  33550496 atgtcctatgtttattttgtaacaagttggcaattttagagttaatgtaata-ttttttatcccgcgataaaccgcacaaatcgaatcaatccaaaccgc 33550398  T
Q  261 a----------ttggtttggtgtgaatgacttttt-aaattcaatcgaaccaattcataccacatgcttctttatctcgcgatttggatgacttttatgc 349  Q
    |          |||||||||| || |||||||||| ||| |||| ||||||||   | ||  |||| || |||||| | || ||||||||||||||||||    
T  33550397 attggtttggtttggtttggtttggatgactttttaaaaatcaaccgaaccaaactaaacatcatgtttttttatccctcggtttggatgacttttatgc 33550298  T
Q  350 tcaaaatcgaatcaaaccg 368  Q
    |||||| ||||||||||||    
T  33550297 tcaaaaccgaatcaaaccg 33550279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 220 - 379
Target Start/End: Original strand, 5874116 - 5874286
Alignment:
Q  220 atctcgcgataaaccgcatcaaccgaaccaatccaaaccgcattggtttggtgtga----------atgacttttt-aaattcaatcgaaccaattcata 308  Q
    |||||||||| |||||||||||| |||||||||||||||||||||||||||| ||           |||||||||| ||| |||| ||||||||  || |    
T  5874116 atctcgcgattaaccgcatcaactgaaccaatccaaaccgcattggtttggtttggtttggtttggatgactttttaaaaatcaaccgaaccaaaccaaa 5874215  T
Q  309 ccacatgcttctttatctcgcgatttggatgacttttatgctcaaaatcgaatcaaaccgtaccacgaaca 379  Q
    || ||||||| ||| ||||||| ||||||||| | |||||||  ||| |||| ||||||| ||| ||||||    
T  5874216 ccgcatgcttttttctctcgcggtttggatgattattatgcttgaaaccgaaccaaaccgcaccgcgaaca 5874286  T

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Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 229 - 271
Target Start/End: Original strand, 13810842 - 13810884
Alignment:
Q  229 taaaccgcatcaaccgaaccaatccaaaccgcattggtttggt 271  Q
    |||||||||  ||||||||||||||||||||||||||||||||    
T  13810842 taaaccgcacaaaccgaaccaatccaaaccgcattggtttggt 13810884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 262 - 355
Target Start/End: Original strand, 13810885 - 13810979
Alignment:
Q  262 ttggtttggtgtgaatgactttttaaat-tcaatcgaaccaattcataccacatgcttctttatctcgcgatttggatgacttttatgctcaaaa 355  Q
    |||||||||| || |||||||||||||  ||||  |||||||  || |||  |||||| ||||||||||| |||||||||||||| |||||||||    
T  13810885 ttggtttggtttggatgactttttaaaaatcaactgaaccaaaccaaaccgtatgcttttttatctcgcggtttggatgacttttttgctcaaaa 13810979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 271
Target Start/End: Complemental strand, 28610721 - 28610680
Alignment:
Q  230 aaaccgcatcaaccgaaccaatccaaaccgcattggtttggt 271  Q
    |||| ||| ||||||||||||||||||||||||| |||||||    
T  28610721 aaactgcaacaaccgaaccaatccaaaccgcattagtttggt 28610680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 91; Significance: 6e-44; HSPs: 2)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 157 - 368
Target Start/End: Complemental strand, 128818 - 128596
Alignment:
Q  157 taaaatgtcctatgtttattttgtaacaagttggcaatattagagttaatgtaatannnnnnnatctcgcgataaaccgcatcaaccgaaccaatccaaa 256  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||       ||||||||||||||||||  ||||||||||||||||     
T  128818 taaaatgtcctatgtttattttgttacaagttggcaatattagagttaatgtaatatttttttatctcgcgataaaccgcacaaaccgaaccaatccaag 128719  T
Q  257 ccgca----------ttggtttggtgtgaatgacttttt-aaattcaatcgaaccaattcataccacatgcttctttatctcgcgatttggatgactttt 345  Q
    |||||          |||||| ||| || |||||||||| ||| ||||  |||||||  || ||||||||||| ||||||| ||| ||||||||||||||    
T  128718 ccgcattgatttggtttggttcggtttggatgactttttaaaaatcaacagaaccaaaccaaaccacatgcttttttatcttgcggtttggatgactttt 128619  T
Q  346 atgctcaaaatcgaatcaaaccg 368  Q
    ||||||||||||||| |||||||    
T  128618 atgctcaaaatcgaaccaaaccg 128596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 157 - 379
Target Start/End: Complemental strand, 106211 - 105978
Alignment:
Q  157 taaaatgtcctatgtttattttgtaacaagttggcaatattagagttaatgtaatannnnnnnatctcgcgataaaccgcatcaaccgaaccaatccaaa 256  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||       ||||| ||||||||||||  |||||||||||| |||     
T  106211 taaaatttcctatgtttattttgtaacaagttggcaatattagagttaatgtaatatttttttatctctcgataaaccgcacaaaccgaaccaattcaag 106112  T
Q  257 ccgca----------ttggtttggtgtgaatgac-tttttaaattcaatcgaaccaattcataccacatgcttctttatctcgcgatttggatgactttt 345  Q
    |||||          |||||| ||| || ||||| |||| ||| |||| ||||||||  || ||||||||||| ||||||| ||| ||||||||||||||    
T  106111 ccgcattgatttggtttggttcggtttggatgacattttaaaaatcaaccgaaccaaaccaaaccacatgcttttttatcttgcggtttggatgactttt 106012  T
Q  346 atgctcaaaatcgaatcaaaccgtaccacgaaca 379  Q
     |||||||||||||| ||||||| ||| ||||||    
T  106011 ttgctcaaaatcgaaccaaaccgcaccgcgaaca 105978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0308 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: scaffold0308
Description:

Target: scaffold0308; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 220 - 379
Target Start/End: Original strand, 5857 - 6017
Alignment:
Q  220 atctcgcgataaaccgcatcaaccgaaccaatccaaaccgcattggtttggtgtgaatgacttttt-aaattcaatcgaaccaattcataccacatgctt 318  Q
    |||||||||| |||||||||||| |||||||||||||||||||||||||||| || |||||||||| ||| |||| ||||||||  || ||| |||||||    
T  5857 atctcgcgattaaccgcatcaactgaaccaatccaaaccgcattggtttggtttggatgactttttaaaaatcaaccgaaccaaaccaaaccgcatgctt 5956  T
Q  319 ctttatctcgcgatttggatgacttttatgctcaaaatcgaatcaaaccgtaccacgaaca 379  Q
     ||| ||||||| ||||||||| | |||||||  |||||||| ||||||| ||| ||||||    
T  5957 ttttctctcgcggtttggatgattattatgcttgaaatcgaaccaaaccgcaccgcgaaca 6017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 157 - 271
Target Start/End: Original strand, 40481 - 40595
Alignment:
Q  157 taaaatgtcctatgtttattttgtaacaagttggcaatattagagttaatgtaatannnnnnnatctcgcgataaaccgcatcaaccgaaccaatccaaa 256  Q
    ||||| ||| |||||||||||||||||||||||| ||||||||||| |||||||||       ||||||||||||||||||   | ||||||||||||||    
T  40481 taaaacgtcttatgtttattttgtaacaagttggtaatattagagtcaatgtaatatttttttatctcgcgataaaccgcacatatcgaaccaatccaaa 40580  T
Q  257 ccgcattggtttggt 271  Q
    |||||||||||||||    
T  40581 ccgcattggtttggt 40595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 320 - 379
Target Start/End: Original strand, 40660 - 40719
Alignment:
Q  320 tttatctcgcgatttggatgacttttatgctcaaaatcgaatcaaaccgtaccacgaaca 379  Q
    |||||||| || ||||||||||| |||||||||||| |||| ||||||| ||| ||||||    
T  40660 tttatctcacggtttggatgactattatgctcaaaaccgaaccaaaccgcaccgcgaaca 40719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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