View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1946_low_5 (Length: 701)
Name: NF1946_low_5
Description: NF1946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1946_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 293; Significance: 1e-164; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 145 - 567
Target Start/End: Complemental strand, 38077301 - 38076875
Alignment:
| Q |
145 |
gcaaattaaaatttaattcaactgannnnnnngacacataatccaagtgattaggcttatgagttttctaaataaccaagtgtttggagtctagcataag |
244 |
Q |
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| T |
38077301 |
gcaaattaaaatttaattcaactgatttttt-gactcataatccaagtgattacgcttatgagttttctaaataaccaagtgtttggagtctagcataag |
38077203 |
T |
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| Q |
245 |
tggttgttgcgtaatgtaata-----ttattgagcggtgtaatattgacgtaacattcatcgatgtagtttgatatatatctctctccatttatgtgtct |
339 |
Q |
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| T |
38077202 |
tg-ttgttgcgtaatgtaatactgtattattgagcggtgtaatattgacgtaacattcattgatgtagtttgatatatctctctctccatttatgtgtct |
38077104 |
T |
|
| Q |
340 |
cctatctgtgtatgtttgtcaacaactcaaaaggtacannnnnnn-ggacaaaaactcaaaacttatctatcatgtagttattttttggttagatannnn |
438 |
Q |
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| T |
38077103 |
catgtctgtgtatgtttgtcaacaactcaaaaggtacattttttttggacaaaaactcaaaacttatctatcatgtagttattttttggttagatatttt |
38077004 |
T |
|
| Q |
439 |
nnnaaccaagttcaccttaagaaaaccatttaatttattatgtttaaatttaaactcaaatccacgacataattatagggtatttgaaaagtaattacct |
538 |
Q |
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| T |
38077003 |
tttaaccaagttcaccttaagaaaaccatttaatttattacgtttaaatttaaactcaaatcgacgacataattatagggtatttgaaaagtaattacct |
38076904 |
T |
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| Q |
539 |
atctttgttgaacattatttttatatttc |
567 |
Q |
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| T |
38076903 |
atctttgttgaacattatttttatatttc |
38076875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 7 - 118
Target Start/End: Complemental strand, 38077403 - 38077292
Alignment:
| Q |
7 |
tcgaagaatatta-taaatataaacaacatatgctttatcccctnnnnnnnncataatgtttttattaatctctcatcaacctcttcaagttgcaggctt |
105 |
Q |
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||||| ||||||| |||||||||||||||||||||||||||||| |||| |||||| |||||||||||||||||||||||||||||||||||| |
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| T |
38077403 |
tcgaacaatattaataaatataaacaacatatgctttatcccctaaaaaaaacata-tgttttaattaatctctcatcaacctcttcaagttgcaggctt |
38077305 |
T |
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| Q |
106 |
gcagcaaattaaa |
118 |
Q |
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||||||||||||| |
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| T |
38077304 |
gcagcaaattaaa |
38077292 |
T |
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