View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1946_low_51 (Length: 400)

Name: NF1946_low_51
Description: NF1946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1946_low_51
NF1946_low_51
[»] chr6 (12 HSPs)
chr6 (84-386)||(9153431-9153733)
chr6 (84-386)||(9174972-9175274)
chr6 (189-317)||(9178087-9178215)
chr6 (189-288)||(9148878-9148977)
chr6 (84-135)||(9149018-9149069)
chr6 (84-135)||(9177995-9178046)
chr6 (37-75)||(9149120-9149158)
chr6 (37-75)||(9177906-9177944)
chr6 (32-81)||(2455819-2455868)
chr6 (264-313)||(34625729-34625778)
chr6 (264-300)||(2820379-2820415)
chr6 (84-120)||(9151052-9151088)
[»] chr8 (4 HSPs)
chr8 (284-331)||(24205844-24205891)
chr8 (264-310)||(1979410-1979456)
chr8 (25-75)||(30277263-30277313)
chr8 (51-79)||(42197180-42197208)
[»] chr4 (4 HSPs)
chr4 (257-300)||(32369920-32369963)
chr4 (85-121)||(3637304-3637340)
chr4 (264-300)||(35212742-35212778)
chr4 (264-300)||(36768864-36768900)
[»] chr2 (3 HSPs)
chr2 (31-82)||(43205317-43205368)
chr2 (25-78)||(1742047-1742100)
chr2 (31-75)||(29419869-29419913)
[»] chr3 (6 HSPs)
chr3 (264-310)||(36301991-36302037)
chr3 (284-321)||(11658802-11658839)
chr3 (51-80)||(49465949-49465978)
chr3 (31-75)||(30923916-30923960)
chr3 (264-300)||(49636841-49636877)
chr3 (85-121)||(51929849-51929885)
[»] chr5 (1 HSPs)
chr5 (53-81)||(4948569-4948597)
[»] chr1 (2 HSPs)
chr1 (31-75)||(33976694-33976738)
chr1 (31-75)||(35925698-35925742)


Alignment Details
Target: chr6 (Bit Score: 275; Significance: 1e-154; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 84 - 386
Target Start/End: Complemental strand, 9153733 - 9153431
Alignment:
Q  84 tagtgtttatgctaatatataaactcaaataagtcaatggaacgggcccttagttggttcggcctgataattatttttaagttagttggtgatttgctta 183  Q
    ||||||||||||||||||||||||||| ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9153733 tagtgtttatgctaatatataaactcatataagtcaatccaacgggcccttagttggttcggcctgataattatttttaagttagttggtgatttgctta 9153634  T
Q  184 taacctctaaagcactgacacttttaattaaaggcatatccaatgtccaatatcgatacaacattgataaatgtgatttttgattacattcatttaatta 283  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||    
T  9153633 taacctctaaagcactgacacttttaattaaaggcatatccaatgtccaatatcgatacaacattgatatatgtgattgttgattacattcatttaatta 9153534  T
Q  284 attttctcaaattattaacgatgttgatgtctcagtgttgtgtccaatgtccggctgcttgataggttatattataagcacttatactacaagcttatgt 383  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||    
T  9153533 attttctcaaattattaacgatgttgatgtctcagtgttgtgtccaatgtccggctgcttcataggttatattataagcgcttatactacaagcttatgt 9153434  T
Q  384 ctc 386  Q
    |||    
T  9153433 ctc 9153431  T

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Target: chr6; HSP #2
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 84 - 386
Target Start/End: Original strand, 9174972 - 9175274
Alignment:
Q  84 tagtgtttatgctaatatataaactcaaataagtcaatggaacgggcccttagttggttcggcctgataattatttttaagttagttggtgatttgctta 183  Q
    ||||||||||||||||||||||||||| ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9174972 tagtgtttatgctaatatataaactcatataagtcaatccaacgggcccttagttggttcggcctgataattatttttaagttagttggtgatttgctta 9175071  T
Q  184 taacctctaaagcactgacacttttaattaaaggcatatccaatgtccaatatcgatacaacattgataaatgtgatttttgattacattcatttaatta 283  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  9175072 taacctctaaagcactgacacttttaattaaaggcatatccaatgtccaatatcgatacaacattgataaatgtgattgttgattacattcatttaatta 9175171  T
Q  284 attttctcaaattattaacgatgttgatgtctcagtgttgtgtccaatgtccggctgcttgataggttatattataagcacttatactacaagcttatgt 383  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||    
T  9175172 attttctcaaattattaacaatgttgatgtctcagtgttgtgtccaatgtccggctgcttcataggttatattataagcgcttatactacaagcttatgt 9175271  T
Q  384 ctc 386  Q
    |||    
T  9175272 ctc 9175274  T

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Target: chr6; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 189 - 317
Target Start/End: Original strand, 9178087 - 9178215
Alignment:
Q  189 tctaaagcactgacacttttaattaaaggcatatccaatgtccaatatcgatacaacattgataaatgtgatttttgattacattcatttaattaatttt 288  Q
    |||||||||| ||||||||||||| ||||| ||||   ||||||||| |||||||||||||||| ||||||||   ||||  ||||| ||||||||||||    
T  9178087 tctaaagcaccgacacttttaattgaaggcgtatctggtgtccaataccgatacaacattgatacatgtgattgccgattctattcaattaattaatttt 9178186  T
Q  289 ctcaaattattaacgatgttgatgtctca 317  Q
     |||| || |||||| |||||||||||||    
T  9178187 ttcaatttgttaacgttgttgatgtctca 9178215  T

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Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 189 - 288
Target Start/End: Complemental strand, 9148977 - 9148878
Alignment:
Q  189 tctaaagcactgacacttttaattaaaggcatatccaatgtccaatatcgatacaacattgataaatgtgatttttgattacattcatttaattaatttt 288  Q
    ||||||| || ||||||||||||| ||||| ||||   ||||||||| |||||||||||||||| ||||||||   ||||| ||||| |||||| |||||    
T  9148977 tctaaagtaccgacacttttaattgaaggcgtatctggtgtccaataccgatacaacattgatacatgtgattgccgattatattcaattaattgatttt 9148878  T

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Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 84 - 135
Target Start/End: Complemental strand, 9149069 - 9149018
Alignment:
Q  84 tagtgtttatgctaatatataaactcaaataagtcaatggaacgggccctta 135  Q
    |||||||||||||||||||||||||||||||||||| | |||| ||||||||    
T  9149069 tagtgtttatgctaatatataaactcaaataagtcagttgaacaggccctta 9149018  T

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Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 84 - 135
Target Start/End: Original strand, 9177995 - 9178046
Alignment:
Q  84 tagtgtttatgctaatatataaactcaaataagtcaatggaacgggccctta 135  Q
    |||||||||||||||||||||||||||||||||||| | |||| ||||||||    
T  9177995 tagtgtttatgctaatatataaactcaaataagtcagttgaacaggccctta 9178046  T

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Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 37 - 75
Target Start/End: Complemental strand, 9149158 - 9149120
Alignment:
Q  37 ataacctatcagagagagtttatggaaataagttgaaaa 75  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  9149158 ataacctatcatagagagtttatggaaataagttgaaaa 9149120  T

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Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 37 - 75
Target Start/End: Original strand, 9177906 - 9177944
Alignment:
Q  37 ataacctatcagagagagtttatggaaataagttgaaaa 75  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  9177906 ataacctatcatagagagtttatggaaataagttgaaaa 9177944  T

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Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 81
Target Start/End: Original strand, 2455819 - 2455868
Alignment:
Q  32 ttttcataacctatcagagagagtttatggaaataagttgaaaatagttt 81  Q
    ||||||||| |||||   ||||| ||||||||||||||||||||||||||    
T  2455819 ttttcataagctatcttggagagcttatggaaataagttgaaaatagttt 2455868  T

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Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 313
Target Start/End: Complemental strand, 34625778 - 34625729
Alignment:
Q  264 tgattacattcatttaattaattttctcaaattattaacgatgttgatgt 313  Q
    |||||||||||| |||||| ||||||||||||||||| || ||| |||||    
T  34625778 tgattacattcaattaattcattttctcaaattattatcggtgtcgatgt 34625729  T

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Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 264 - 300
Target Start/End: Original strand, 2820379 - 2820415
Alignment:
Q  264 tgattacattcatttaattaattttctcaaattatta 300  Q
    |||||||||||||||| || |||||||||||||||||    
T  2820379 tgattacattcatttattttattttctcaaattatta 2820415  T

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Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 84 - 120
Target Start/End: Complemental strand, 9151088 - 9151052
Alignment:
Q  84 tagtgtttatgctaatatataaactcaaataagtcaa 120  Q
    ||||||||||| || ||||||||||||||||||||||    
T  9151088 tagtgtttatggtagtatataaactcaaataagtcaa 9151052  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 284 - 331
Target Start/End: Original strand, 24205844 - 24205891
Alignment:
Q  284 attttctcaaattattaacgatgttgatgtctcagtgttgtgtccaat 331  Q
    ||||||||||||| ||| || ||||||||| |||||||||||||||||    
T  24205844 attttctcaaatttttagcggtgttgatgtatcagtgttgtgtccaat 24205891  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 264 - 310
Target Start/End: Complemental strand, 1979456 - 1979410
Alignment:
Q  264 tgattacattcatttaattaattttctcaaattattaacgatgttga 310  Q
    |||||||||| | |||||||||||||||||||||||| || ||||||    
T  1979456 tgattacatttaattaattaattttctcaaattattaccggtgttga 1979410  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 75
Target Start/End: Complemental strand, 30277313 - 30277263
Alignment:
Q  25 taagccgttttcataacctatcagagagagtttatggaaataagttgaaaa 75  Q
    ||||| |||||||||| |||||  |||||||||||||||||||| ||||||    
T  30277313 taagctgttttcataagctatcctagagagtttatggaaataagctgaaaa 30277263  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 51 - 79
Target Start/End: Original strand, 42197180 - 42197208
Alignment:
Q  51 agagtttatggaaataagttgaaaatagt 79  Q
    |||||||||||||||||||||||||||||    
T  42197180 agagtttatggaaataagttgaaaatagt 42197208  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 257 - 300
Target Start/End: Original strand, 32369920 - 32369963
Alignment:
Q  257 tgatttttgattacattcatttaattaattttctcaaattatta 300  Q
    ||||| ||||||||||||| |||||| |||||||||||||||||    
T  32369920 tgattattgattacattcaattaattcattttctcaaattatta 32369963  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 85 - 121
Target Start/End: Complemental strand, 3637340 - 3637304
Alignment:
Q  85 agtgtttatgctaatatataaactcaaataagtcaat 121  Q
    |||||||||||||||| |||| |||||||||||||||    
T  3637340 agtgtttatgctaatagataagctcaaataagtcaat 3637304  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 264 - 300
Target Start/End: Original strand, 35212742 - 35212778
Alignment:
Q  264 tgattacattcatttaattaattttctcaaattatta 300  Q
    |||||||||||| ||| ||||||||||||||||||||    
T  35212742 tgattacattcaattatttaattttctcaaattatta 35212778  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 264 - 300
Target Start/End: Original strand, 36768864 - 36768900
Alignment:
Q  264 tgattacattcatttaattaattttctcaaattatta 300  Q
    |||||||||||| |||||||||| |||||||||||||    
T  36768864 tgattacattcaattaattaattctctcaaattatta 36768900  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 31 - 82
Target Start/End: Original strand, 43205317 - 43205368
Alignment:
Q  31 gttttcataacctatcagagagagtttatggaaataagttgaaaatagtttg 82  Q
    |||||||||| ||||||  ||||| |||||||||||||||||||| ||||||    
T  43205317 gttttcataagctatcacggagagcttatggaaataagttgaaaacagtttg 43205368  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 78
Target Start/End: Complemental strand, 1742100 - 1742047
Alignment:
Q  25 taagccgttttcataacctatcagagagagtttatggaaataagttgaaaatag 78  Q
    ||||| |||||||||| ||||||   ||||||||||||||||||||||| ||||    
T  1742100 taagctgttttcataatctatcatgaagagtttatggaaataagttgaagatag 1742047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 31 - 75
Target Start/End: Original strand, 29419869 - 29419913
Alignment:
Q  31 gttttcataacctatcagagagagtttatggaaataagttgaaaa 75  Q
    |||||||||  |||||  |||||||||||||||||||||||||||    
T  29419869 gttttcatatgctatcctagagagtttatggaaataagttgaaaa 29419913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 264 - 310
Target Start/End: Complemental strand, 36302037 - 36301991
Alignment:
Q  264 tgattacattcatttaattaattttctcaaattattaacgatgttga 310  Q
    |||||||||||| |||||| ||||||||| ||||||| |||||||||    
T  36302037 tgattacattcaattaatttattttctcacattattaccgatgttga 36301991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 284 - 321
Target Start/End: Complemental strand, 11658839 - 11658802
Alignment:
Q  284 attttctcaaattattaacgatgttgatgtctcagtgt 321  Q
    |||||||||||||||||||||||||| ||| |||||||    
T  11658839 attttctcaaattattaacgatgttggtgtgtcagtgt 11658802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 80
Target Start/End: Complemental strand, 49465978 - 49465949
Alignment:
Q  51 agagtttatggaaataagttgaaaatagtt 80  Q
    ||||||||||||||||||||||||||||||    
T  49465978 agagtttatggaaataagttgaaaatagtt 49465949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 31 - 75
Target Start/End: Complemental strand, 30923960 - 30923916
Alignment:
Q  31 gttttcataacctatcagagagagtttatggaaataagttgaaaa 75  Q
    ||||||||||||||||  ||||||||||| |||||||| ||||||    
T  30923960 gttttcataacctatcctagagagtttatagaaataagctgaaaa 30923916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 264 - 300
Target Start/End: Original strand, 49636841 - 49636877
Alignment:
Q  264 tgattacattcatttaattaattttctcaaattatta 300  Q
    |||||||||||| |||||| |||||||||||||||||    
T  49636841 tgattacattcaattaattcattttctcaaattatta 49636877  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 85 - 121
Target Start/End: Original strand, 51929849 - 51929885
Alignment:
Q  85 agtgtttatgctaatatataaactcaaataagtcaat 121  Q
    |||||||||||||||| |||| |||||||||||||||    
T  51929849 agtgtttatgctaatagataagctcaaataagtcaat 51929885  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 53 - 81
Target Start/End: Complemental strand, 4948597 - 4948569
Alignment:
Q  53 agtttatggaaataagttgaaaatagttt 81  Q
    |||||||||||||||||||||||||||||    
T  4948597 agtttatggaaataagttgaaaatagttt 4948569  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 31 - 75
Target Start/End: Original strand, 33976694 - 33976738
Alignment:
Q  31 gttttcataacctatcagagagagtttatggaaataagttgaaaa 75  Q
    |||||| |||||||||  |||||| ||||||||||||||||||||    
T  33976694 gttttcttaacctatcctagagagcttatggaaataagttgaaaa 33976738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 31 - 75
Target Start/End: Original strand, 35925698 - 35925742
Alignment:
Q  31 gttttcataacctatcagagagagtttatggaaataagttgaaaa 75  Q
    |||| ||||| ||||||  ||||||||||||||||||||||||||    
T  35925698 gtttccataagctatcatggagagtttatggaaataagttgaaaa 35925742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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