View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1946_low_53 (Length: 393)
Name: NF1946_low_53
Description: NF1946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1946_low_53 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 33 - 392
Target Start/End: Complemental strand, 43503309 - 43502950
Alignment:
| Q |
33 |
gtgtatttattacgacatacaatacaattgtggtaataaaataaaagtaaggaggagtggagagaggtaggtaacaatacctggtttgaagaaaacagag |
132 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43503309 |
gtgtatttattacgacatacaatacaattgtggtaataaaataaaagtaaggaggagtggagagaggtaggtaacaatacctggtttgaagaaaacagag |
43503210 |
T |
|
| Q |
133 |
aggccaaagtcaatagctttaagagagaaatcgtcatctttgttaaccaacaaaaagttttcaggcttgagatctctatgcataacaccaagggaatgac |
232 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43503209 |
aggccaaagtcaatagctttaagagagaaatcgtcatctttgttaaccaacaaaaagttttcaggcttgagatctctatgcataacaccaagggaatgac |
43503110 |
T |
|
| Q |
233 |
aggcctcaacaacaccaacaataattctggtcaactcagcagccttcctctcggtataatgacctctctggatgatacgatcgaagagctcgccaccaga |
332 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43503109 |
aggcctcgacaacaccaacaataattctggtcaactcagcagccttcctctcggtataatgacctctctggatgatacgatcgaagagctcgccaccaga |
43503010 |
T |
|
| Q |
333 |
acaaagctccatgacaatatggacatagagagcatcctcataggcacccttgatggtaac |
392 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43503009 |
acaaagctccatgacaatatggacatagagagcatcctcataggcacccttgatggtaac |
43502950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 181 - 254
Target Start/End: Original strand, 43464984 - 43465057
Alignment:
| Q |
181 |
aacaaaaagttttcaggcttgagatctctatgcataacaccaagggaatgacaggcctcaacaacaccaacaat |
254 |
Q |
| |
|
||||| || ||||||||||| |||||||| ||||| |||||||| |||||||| | |||||||||||||||||| |
|
|
| T |
43464984 |
aacaagaaattttcaggcttaagatctctgtgcatgacaccaagagaatgacatgtctcaacaacaccaacaat |
43465057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 196 - 251
Target Start/End: Complemental strand, 18400184 - 18400129
Alignment:
| Q |
196 |
ggcttgagatctctatgcataacaccaagggaatgacaggcctcaacaacaccaac |
251 |
Q |
| |
|
||||| || ||||||||||| |||||||| ||||||||||| |||||||||||||| |
|
|
| T |
18400184 |
ggcttaaggtctctatgcatcacaccaagagaatgacaggcttcaacaacaccaac |
18400129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 255
Target Start/End: Complemental strand, 23256023 - 23255974
Alignment:
| Q |
206 |
ctctatgcataacaccaagggaatgacaggcctcaacaacaccaacaata |
255 |
Q |
| |
|
||||||||||||||||||| |||||||| || |||||||| |||||||| |
|
|
| T |
23256023 |
ctctatgcataacaccaagagaatgacaagcttcaacaacctcaacaata |
23255974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 222
Target Start/End: Original strand, 36383323 - 36383364
Alignment:
| Q |
181 |
aacaaaaagttttcaggcttgagatctctatgcataacacca |
222 |
Q |
| |
|
||||||||||| |||||||||||||| |||||||| |||||| |
|
|
| T |
36383323 |
aacaaaaagttctcaggcttgagatccctatgcatcacacca |
36383364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University