View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1946_low_54 (Length: 387)
Name: NF1946_low_54
Description: NF1946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1946_low_54 |
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Alignment Details
Target: chr6 (Bit Score: 324; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 1 - 369
Target Start/End: Original strand, 7562632 - 7563002
Alignment:
| Q |
1 |
acccacaagtcatatgactcatatatataacattaataatttagtcatttacgtgttacatatgacggcgagcatggtccataatttcttcgtttcattt |
100 |
Q |
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| T |
7562632 |
acccataagtcatatgactcatatatataacattaataatttagtcatttacgtgttacatatgacggcgagcatggtccataatttcttcgtttcattt |
7562731 |
T |
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| Q |
101 |
tccattcaacaaaccatat--aaatatgtctttaactcaagtcattcttatttcacttccaacattattcacaactccttcattttcttgttccatcaaa |
198 |
Q |
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| T |
7562732 |
tccattcaacaaaccatatataaatatgtctttaactcaagtcattcttatttcacttccaactttattcacaactccttcattttcttgttccatcaaa |
7562831 |
T |
|
| Q |
199 |
accatgacaaattttgagttcccaacaaatttttctaatgaactacccaacgacgttgttttctgcggaaaagtcataacacgcaaaactgaaacacaag |
298 |
Q |
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| T |
7562832 |
tccatgacaaattttgagttccccacaaatttttctaatgaattaccaaacgacgttgttttctgcggaaaagtcataacacgcaaaactgaaccacaag |
7562931 |
T |
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| Q |
299 |
taaacaaagacaacaccacggttgttgccggtatccggtcgctgtccgtcaaggaaaaccggtaccgaagg |
369 |
Q |
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| T |
7562932 |
caaacaaagacaacaccacggttgttgccggtatccggtcgctgtccgtcaaggaaaaccggaaccgaagg |
7563002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 44 - 369
Target Start/End: Original strand, 7558546 - 7558871
Alignment:
| Q |
44 |
gtcatttacgtgttacatatgacggcgagcatggtccataatttcttcgtttcattttccattcaacaaaccatataaatatgtctttaactcaagtcat |
143 |
Q |
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| T |
7558546 |
gtcattaacgtgttacacatgaaaacgaccatggcccataatttcttcgtttcattttcctttgaacaaaccatataaatatgtctttaattcaagtcat |
7558645 |
T |
|
| Q |
144 |
tcttatttcacttccaacattattcacaactccttcattttcttgttccatcaaaaccatgacaaattttgagttcccaacaaatttttctaatgaacta |
243 |
Q |
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| T |
7558646 |
ttttatttcacttccaacattattcacagctccttcattttcttgttccatcaaaaccatgacaaattttgagttcccaacaaatttttctaatgaacta |
7558745 |
T |
|
| Q |
244 |
cccaacgacgttgttttctgcggaaaagtcataacacgcaaaactgaaacacaagtaaacaaagacaacaccacggttgttgccggtatccggtcgctgt |
343 |
Q |
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| T |
7558746 |
cccaacgacattgttttctgcggaaaagtcataacacgcaaaactgaaacacaagtaaacaaagacaacaccacggttgttgccggtatccggtcgctgt |
7558845 |
T |
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| Q |
344 |
ccgtcaaggaaaaccggtaccgaagg |
369 |
Q |
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|||||||||||||||||||||||||| |
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| T |
7558846 |
ccgtcaaggaaaaccggtaccgaagg |
7558871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 209 - 362
Target Start/End: Original strand, 7567892 - 7568049
Alignment:
| Q |
209 |
attttgagttcccaacaaatttttctaatgaactacccaacgacgttgttttctgcggaaaagtcataacacgcaaaactga----aacacaagtaaaca |
304 |
Q |
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||||||| |||||| || |||||||| ||||||||| || ||||||||||||||| |||||||||||||||| |||||| | | ||||| ||||| |
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| T |
7567892 |
attttgaattcccagtaactttttctagtgaactaccaaatgacgttgttttctgcagaaaagtcataacacgtaaaactaactaaaccacaaacaaaca |
7567991 |
T |
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| Q |
305 |
aagacaacaccacggttgttgccggtatccggtcgctgtccgtcaaggaaaaccggta |
362 |
Q |
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| T |
7567992 |
aagacgacaccacaattgttgccggtatccggtcactgtccgtcaaggaaaaccggta |
7568049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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