View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1946_low_56 (Length: 381)
Name: NF1946_low_56
Description: NF1946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1946_low_56 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 10 - 332
Target Start/End: Original strand, 41429812 - 41430136
Alignment:
| Q |
10 |
taatactaggtggaaatccgtgcgtgcaaggatttgattataatgtgttaagacccttcnnnnnnn--gtgttaagaacattttagttaataaaataata |
107 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
41429812 |
taatattaggtggaaatccgtgcgtgcaaggatttgattataatgtgttaagacccttaaaaaaaaaagtgttaagaacattttagttaataaaataata |
41429911 |
T |
|
| Q |
108 |
tattgatcgatggatttaaatggtaaaattacaaacaaattcaaacataaattgacaacatataacatttataatgcactatgtggttaatgcagttcac |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
41429912 |
tattgatcgatggatttaaatggtaaaattacaaacaaattcaaacataaattgacaacatataacatttataatccactatgtggttaatgcagttcac |
41430011 |
T |
|
| Q |
208 |
ttgaagattaataaatttaaaaatgtattgcaactcgttatatgcctatttaaacactcgaatacttagaaattgcaaagatgaattattaatttaatat |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41430012 |
ttgaagattaataaatttaaaaatgtattgcaactcgttatatgcctatttaaacactcgaatacttagaaattgcaaagatgaattattaatttaatat |
41430111 |
T |
|
| Q |
308 |
aattagagagacggtagaaataact |
332 |
Q |
| |
|
|||||||||||| |||| ||||||| |
|
|
| T |
41430112 |
aattagagagactgtaggaataact |
41430136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University