View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1946_low_59 (Length: 371)
Name: NF1946_low_59
Description: NF1946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1946_low_59 |
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Alignment Details
Target: chr7 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 18 - 339
Target Start/End: Complemental strand, 12823629 - 12823308
Alignment:
| Q |
18 |
aatgtatacttattccaattgcaattttatgtttaattcttcttaaatttttattattacatttgttgtgtttgtctttaagatatgatatgtgtgacct |
117 |
Q |
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| T |
12823629 |
aatgtatacatattccaattgcaattttatgtttaattctttttaaatttttattattacatttgttgtgtttgtctttaagatatgatatgtgtgacct |
12823530 |
T |
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| Q |
118 |
ggctgaaaaaatttctagccatcatcacattcttcacgacatgtgaagtccaccaaaatgtcttcaaaatgaatgtaacaagttctgccttgattgcaat |
217 |
Q |
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| T |
12823529 |
ggctgaaaaaatttctagccatcatcacattcttcacaacatgcgaagtccaccaaaatgtcttcgaaatgaatgtaacaagttctgccttgattgcact |
12823430 |
T |
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| Q |
218 |
gataatatctaatgtagatgttacataaaatcggatcacaaagatcatcgagtaatccaagtaggtgttgtttagtttgatagctagatctatatgatat |
317 |
Q |
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| T |
12823429 |
gataatgtcttatgtagatgttgcataaaatcaggtcacaaaaatcatcgagtaatccaagtaggtgttgtttagtttgatagctagatttatatgatat |
12823330 |
T |
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| Q |
318 |
ctcaattatatatatgtctttg |
339 |
Q |
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| T |
12823329 |
ctcaatgatatatctgtctttg |
12823308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 323
Target Start/End: Original strand, 12823011 - 12823081
Alignment:
| Q |
253 |
tcacaaagatcatcgagtaatccaagtaggtgttgtttagtttgatagctagatctatatgatatctcaat |
323 |
Q |
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| T |
12823011 |
tcacatagatcatcgagtaatccaaatcggtgttgtttgatttgacaggaagatctatgtgatatgtcaat |
12823081 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 54; Significance: 6e-22; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 183 - 312
Target Start/End: Complemental strand, 24932184 - 24932055
Alignment:
| Q |
183 |
aaaatgaatgtaacaagttctgccttgattgcaatgataatatctaatgtagatgttacataaaatcggatcacaaagatcatcgagtaatccaagtagg |
282 |
Q |
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||||||| || |||||||||||||| ||||||||||| ||| | |||| ||| || |||||||| |||||||||||| ||||||||||||||||| |
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| T |
24932184 |
aaaatgagtgcaacaagttctgcctcgattgcaatgacaatccattatgtggatcttgcataaaatattgtcacaaagatcaccgagtaatccaagtagg |
24932085 |
T |
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| Q |
283 |
tgttgtttagtttgatagctagatctatat |
312 |
Q |
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| T |
24932084 |
tgttgtttaattttatagttagatctatat |
24932055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 183 - 312
Target Start/End: Complemental strand, 25681673 - 25681544
Alignment:
| Q |
183 |
aaaatgaatgtaacaagttctgccttgattgcaatgataatatctaatgtagatgttacataaaatcggatcacaaagatcatcgagtaatccaagtagg |
282 |
Q |
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| T |
25681673 |
aaaatgagtgcaacaagttctgcctcgattgcaatgacaatccattatgtggatcttgcataaaatattgtcacaaagatcaccgagtaatccaagtagg |
25681574 |
T |
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| Q |
283 |
tgttgtttagtttgatagctagatctatat |
312 |
Q |
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| T |
25681573 |
tgctgtttaattttatagttagatctatat |
25681544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 238 - 311
Target Start/End: Complemental strand, 35130599 - 35130526
Alignment:
| Q |
238 |
ttacataaaatcggatcacaaagatcatcgagtaatccaagtaggtgttgtttagtttgatagctagatctata |
311 |
Q |
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|||||||||||| |||||||||||||||||||||||| ||| |||||||||| |||||| |||||||||| |
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| T |
35130599 |
ttacataaaatctcatcacaaagatcatcgagtaatcctagtgagtgttgtttaaagtgataggtagatctata |
35130526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 241 - 312
Target Start/End: Complemental strand, 35654247 - 35654176
Alignment:
| Q |
241 |
cataaaatcggatcacaaagatcatcgagtaatccaagtaggtgttgtttagtttgatagctagatctatat |
312 |
Q |
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| T |
35654247 |
cataaaatctcatcacaaagatcatcgagtaatccaagtgagtgttctttaaagggatagctagatctatat |
35654176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 253 - 317
Target Start/End: Complemental strand, 35678355 - 35678291
Alignment:
| Q |
253 |
tcacaaagatcatcgagtaatccaagtaggtgttgtttagtttgatagctagatctatatgatat |
317 |
Q |
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|||||||||||||| |||||||||||| ||| |||||| |||||| |||||||| ||| |||| |
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| T |
35678355 |
tcacaaagatcatctagtaatccaagtgagtgctgtttaatttgattactagatctgtataatat |
35678291 |
T |
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