View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1946_low_60 (Length: 371)
Name: NF1946_low_60
Description: NF1946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1946_low_60 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 130; Significance: 3e-67; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 195 - 352
Target Start/End: Original strand, 8011976 - 8012132
Alignment:
| Q |
195 |
tttctcttctttcattcaccctcaaaacttaacaaacacctcaattttgtgtaatcataagctacaaacagaatggaacagtttccacagttttgtagtc |
294 |
Q |
| |
|
|||||||||||||||||||| |||||||||| |||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8011976 |
tttctcttctttcattcacc-tcaaaacttagcaaagacctcaattttgtgttatcataagctacaaacagaatggaacagtttccacagttttgtagtc |
8012074 |
T |
|
| Q |
295 |
acataaagagagaaaaatgctgcaaaaattgcaaaataaacaatttcttgaggcactt |
352 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
8012075 |
acataaagagaaaaaaatgctgcaaaaattgcaaaataaacaatttcttgaagcactt |
8012132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 18 - 99
Target Start/End: Original strand, 8011798 - 8011879
Alignment:
| Q |
18 |
ctcaaaagtcaaatctacttacacaaaactacaaattccaaaacccttttgtgtaaagattgtaacttttctcttagtacta |
99 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |
|
|
| T |
8011798 |
ctcaaaagtcaaatctacttacacaaaactacaaattccaaaacccttttgtgtaaagattgtgttttttctcttactacta |
8011879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University