View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1946_low_63 (Length: 369)
Name: NF1946_low_63
Description: NF1946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1946_low_63 |
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| [»] chr6 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 11 - 369
Target Start/End: Original strand, 4191135 - 4191491
Alignment:
| Q |
11 |
acggaaacttttggtggtgattgagagtgatcaaggagcatttactgcagaagagcgtgaagctgcaaagaaagagtgttttgaggctgctcaagctggg |
110 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
4191135 |
acggaaacttttggttgtgattgagagtgatcaaggagcatttactgcagaagagcgtgaagctgcaaagaaag--tgttttgaggctgctcaagctggg |
4191232 |
T |
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| Q |
111 |
gagaccaaatggagaatggcggggaggatgaggataaagatgaccccctctctgatgagcattatggttatccaaaagctgaatcagataagtgggcatc |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4191233 |
gagaccaaatggagaatggcggggaggatgaggataaagatgaccccctctctgatgagcattatggttatccaaaagctgaatcagataagtgggcatc |
4191332 |
T |
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| Q |
211 |
ctgcatcagaattcttgatccaaaaacaggaaatacaacctgtcttttggagcttcaggatattgaggctgcattcagcgtatgcacagtaaattttcat |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |
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| T |
4191333 |
ctgcatcagaattcttgatccaaaaacaggaaatacaacctgtcttttggagcttcaggataatgaggctgcattcagcggatgcacagtaaattttcat |
4191432 |
T |
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| Q |
311 |
gataaagaatacggaactcttttagccgttggcacagcaaagggactgcaatttacgcc |
369 |
Q |
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| T |
4191433 |
gataaagaatacggaactcttttagacgttggcacagcaaagggactgcaatttacgcc |
4191491 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 11 - 369
Target Start/End: Original strand, 52210673 - 52211050
Alignment:
| Q |
11 |
acggaaacttttggtggtgattgagagtgatcaaggagcatttactgcagaagagcgtgaagctgcaaagaaagagtgttttgaggctgctcaagctggg |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52210673 |
acggaaacttttggtggtgattgagagtgatcaaggagcatttactgcagaagagcgtgaagctgcaaagaaagagtgttttgaggctgctcaagctggg |
52210772 |
T |
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| Q |
111 |
ga-------------------gaccaaatggagaatggcggggaggatgaggataaagatgaccccctctctgatgagcattatggttatccaaaagctg |
191 |
Q |
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| T |
52210773 |
gaaaatgggacagaaagtgcagaccaaatggagaatggcggggaggatgaggataaagatgaccccctctctgatgagcattatggttatccaaaagctg |
52210872 |
T |
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| Q |
192 |
aatcagataagtgggcatcctgcatcagaattcttgatccaaaaacaggaaatacaacctgtcttttggagcttcaggatattgaggctgcattcagcgt |
291 |
Q |
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| T |
52210873 |
aatcagataagtgggcatcctgcatcagaattcttgatccaaaaacaggaaatacaacctgtcttttggagcttcaggataatgaggctgcattcagcgt |
52210972 |
T |
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| Q |
292 |
atgcacagtaaattttcatgataaagaatacggaactcttttagccgttggcacagcaaagggactgcaatttacgcc |
369 |
Q |
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| T |
52210973 |
atgcacagtaaattttcatgataaagaatacggaactcttttagccgttggcacagcaaagggactgcaatttacgcc |
52211050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 11 - 366
Target Start/End: Complemental strand, 47716635 - 47716261
Alignment:
| Q |
11 |
acggaaacttttggtggtgattgagagtgatcaaggagcatttactgcagaagagcgtgaagctgcaaagaaagagtgttttgaggctgctcaagctggg |
110 |
Q |
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|||||||||| ||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| |||||||||||||||||||||||| |||||| |
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| T |
47716635 |
acggaaacttctggtggtgattgagagtgatcaaggagcacttacagcagaagagcgtgaagctgcaaggaaagagtgttttgaggctgctcatgctggg |
47716536 |
T |
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| Q |
111 |
ga-------------------gaccaaatggagaatggcggggaggatgaggataaagatgaccccctctctgatgagcattatggttatccaaaagctg |
191 |
Q |
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|| || |||||||||||||| ||||||||||||||||| || || |||||||||| ||||||||||||||||||||| ||| |
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| T |
47716535 |
gaaaataagactggaagtgaagatcaaatggagaatggtggggaggatgaggataacgacgattccctctctgacgagcattatggttatccaaaatctg |
47716436 |
T |
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| Q |
192 |
aatcagataagtgggcatcctgcatcagaattcttgatccaaaaacaggaaatacaacctgtcttttggagcttcaggatattgaggctgcattcagcgt |
291 |
Q |
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||||||||||||||| ||||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||| | |||||||||||||||| | |
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| T |
47716435 |
aatcagataagtgggtatcctgcatcagagttcttgatccaaggacaggaaatacgacctgtcttttggagcttcaggagaatgaggctgcattcagcat |
47716336 |
T |
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| Q |
292 |
atgcacagtaaattttcatgataaagaatacggaactcttttagccgttggcacagcaaagggactgcaatttac |
366 |
Q |
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|||||| |||||||||||||| || ||||||||||| |||||||| ||||| ||||| ||||||||||| ||||| |
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| T |
47716335 |
atgcactgtaaattttcatgacaaggaatacggaacccttttagctgttggtacagctaagggactgcagtttac |
47716261 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 15 - 366
Target Start/End: Original strand, 47857452 - 47857822
Alignment:
| Q |
15 |
aaacttttggtggtgattgagagtgatcaaggagcatttactgcagaagagcgtgaagctgcaaagaaagagtgttttgaggctgctcaagctgggga-- |
112 |
Q |
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|||||| ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |||||||||||||||||||||||| ||||||| |
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| T |
47857452 |
aaacttctggtggtgattgagagtgatcaaggagcacttactgcaaaagagcgtgaagctgcaaggaaagagtgttttgaggctgctcagactggggaaa |
47857551 |
T |
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| Q |
113 |
-----------------gaccaaatggagaatggcggggaggatgaggataaagatgaccccctctctgatgagcattatggttatccaaaagctgaatc |
195 |
Q |
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| T |
47857552 |
atgcgactggaagtgaagatcaaatggagaatgatggggaggatgaggatcaaggcgattccctctctgacgagcattacggctatccaaaatctgaatc |
47857651 |
T |
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| Q |
196 |
agataagtgggcatcctgcatcagaattcttgatccaaaaacaggaaatacaacctgtcttttggagcttcaggatattgaggctgcattcagcgtatgc |
295 |
Q |
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||||||||||| ||||||||||||| |||||||||||| ||||||||||| || |||||| ||||||||||||| | |||||||||||||||| ||||| |
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| T |
47857652 |
agataagtgggtatcctgcatcagagttcttgatccaaggacaggaaatacgacatgtcttctggagcttcaggagaatgaggctgcattcagcatatgc |
47857751 |
T |
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| Q |
296 |
acagtaaattttcatgataaagaatacggaactcttttagccgttggcacagcaaagggactgcaatttac |
366 |
Q |
| |
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|| |||||||||||||| || || |||||||| |||||||| ||||||||||||||||| ||||| ||||| |
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| T |
47857752 |
accgtaaattttcatgacaaggagtacggaacccttttagctgttggcacagcaaaggggctgcagtttac |
47857822 |
T |
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