View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1946_low_65 (Length: 367)

Name: NF1946_low_65
Description: NF1946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1946_low_65
NF1946_low_65
[»] chr4 (2 HSPs)
chr4 (39-359)||(45970149-45970470)
chr4 (45-359)||(45974690-45975006)


Alignment Details
Target: chr4 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 39 - 359
Target Start/End: Original strand, 45970149 - 45970470
Alignment:
Q  39 atgcaaatctccacgaaaatgttggcattatttggttcatttctcccagtgttgtcaaacggctgttatagcagcattacagtactaaagcgttaagaga 138  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45970149 atgcaaatctccacgaaaatgttggcattatttggttcatttctcccagtgttgtcaaacggctgttatagcagcattacagtactaaagcgttaagaga 45970248  T
Q  139 attagaacatattgctctttttccgtgatacactatttagtaaaaaactcgaataaggttcacagtagcgccgcaatagcaggaacaatattcactgtga 238  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45970249 attagaacatattgctctttttccgtgaaacactatttagtaaaaaactcgaataaggttcacagtagcgccgcaatagcaggaacaatattcactgtga 45970348  T
Q  239 acctaaatagcatgtcgcgtaacataattttaatgtagcgctattgataagagtttggtaacagtgatttcttccttaataa-gttcacggtattaacat 337  Q
    |||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||| |||||||||||||||| |||||||||||||||||    
T  45970349 acctaaatagcatgccgcgtaacataattttaatgtagcactattgataagagtttggttacagttatttcttccttaataaggttcacggtattaacat 45970448  T
Q  338 cctgaccaatggtacctatgct 359  Q
    ||||||||||||||||||||||    
T  45970449 cctgaccaatggtacctatgct 45970470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 45 - 359
Target Start/End: Original strand, 45974690 - 45975006
Alignment:
Q  45 atctccacgaaaatgttggcattatttggttcatttctcccagtgttgtcaaacggctgttatagcagcattacagtactaaagcgttaagagaattaga 144  Q
    |||||||  |||| |||||||| ||||||||||||||||| |||||||||||||  ||| ||||||||| |||  ||  || ||| | ||||||||| ||    
T  45974690 atctccataaaaaagttggcatcatttggttcatttctccgagtgttgtcaaacaactgctatagcagcgtta--gtcttatagcat-aagagaatttga 45974786  T
Q  145 acatattgctctttttccgtgatacactatttagtaaaaaact----cgaataaggttcacagtagcgccgcaatagcaggaacaatattcactgtgaac 240  Q
    ||||||||||||||||||||||||| |||||| ||||||||||    | |||||| |||| ||||||||| |  ||||||||| ||  |||| |||||||    
T  45974787 acatattgctctttttccgtgatacgctattttgtaaaaaactttgtcaaataagattcatagtagcgcccctgtagcaggaaaaaggttcaatgtgaac 45974886  T
Q  241 ctaaatagcatgtcgcgtaacataattttaatgtagcgctattgataagagtttggtaacagtgatttcttccttaataa-gttcacggtattaacatcc 339  Q
    |||||||||||||||||||||| ||||||||  |||| |||||| | || ||||| |||||||| ||||| ||||||||| |||||||||||||||||||    
T  45974887 ctaaatagcatgtcgcgtaacagaattttaacatagcactattgttcagcgtttgataacagtggtttctcccttaataaggttcacggtattaacatcc 45974986  T
Q  340 tgaccaatggtacctatgct 359  Q
    ||||| |||| |||||||||    
T  45974987 tgacctatggcacctatgct 45975006  T

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