View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1946_low_67 (Length: 363)

Name: NF1946_low_67
Description: NF1946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1946_low_67
NF1946_low_67
[»] chr6 (1 HSPs)
chr6 (1-78)||(12185522-12185599)
[»] chr4 (1 HSPs)
chr4 (215-247)||(25727370-25727402)
[»] chr3 (1 HSPs)
chr3 (219-247)||(14779415-14779443)
[»] chr2 (1 HSPs)
chr2 (107-143)||(30255788-30255824)


Alignment Details
Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 12185599 - 12185522
Alignment:
Q  1 ttttgcggcagctcgcctatgtttttgactttgctgtcattgtacaaactctaactgaccttccttaacacaccttat 78  Q
    ||||||||||| || |||||||||||| |||||||||| ||||||||||||||  ||||||||||||||||| |||||    
T  12185599 ttttgcggcagttctcctatgtttttggctttgctgtctttgtacaaactctagttgaccttccttaacacatcttat 12185522  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 215 - 247
Target Start/End: Original strand, 25727370 - 25727402
Alignment:
Q  215 cagaccgttccaataaaattggaggctcggctc 247  Q
    ||||||||||||||||||||||| |||||||||    
T  25727370 cagaccgttccaataaaattggaagctcggctc 25727402  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 219 - 247
Target Start/End: Complemental strand, 14779443 - 14779415
Alignment:
Q  219 ccgttccaataaaattggaggctcggctc 247  Q
    |||||||||||||||||||||||||||||    
T  14779443 ccgttccaataaaattggaggctcggctc 14779415  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 107 - 143
Target Start/End: Original strand, 30255788 - 30255824
Alignment:
Q  107 tttatatatctcattttaacttgttataaaaataaaa 143  Q
    |||||||||||||||||| ||||||| ||||||||||    
T  30255788 tttatatatctcattttagcttgttaaaaaaataaaa 30255824  T

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