View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1946_low_68 (Length: 363)
Name: NF1946_low_68
Description: NF1946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1946_low_68 |
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Alignment Details
Target: chr8 (Bit Score: 292; Significance: 1e-164; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 1 - 351
Target Start/End: Complemental strand, 37936823 - 37936470
Alignment:
| Q |
1 |
tatgattttcttccctttgattcgtggatttgtatttgtaacaccattctttatttaaaaaatgataaatctataactctgaatgtctacagaaatgttt |
100 |
Q |
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| T |
37936823 |
tatgattttcttccctttgattcatggatttgtatttgtaacaccattcgttatttaaaaaatgataaatctataactctgaatgtctacagaaatgttt |
37936724 |
T |
|
| Q |
101 |
gtaacaatgcataaaaaagttagtaagtaaagttttgtaaatgaaaatgcaaaagttacacacattggacataagttttgaaggcatttttcacaaaata |
200 |
Q |
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| T |
37936723 |
gtaacaatgcataaaaaagttagtaagttaagttttgtaaatgaaaatgcaaaagttacacacattgcacataagttttgaaggcatttttcacaaaata |
37936624 |
T |
|
| Q |
201 |
ttcaaaaatttaagttgttcggtgaatgtggtatatcctttatcagtacatcatac---aatgactcgcccatgttttctaattcccacnnnnnnnnctt |
297 |
Q |
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| T |
37936623 |
ttcaaaaatttaagttgtttggtgaatgtggtatatccttgatcagtacatcatacaataatgactcgcccatgttttctaattcccacttttttttctt |
37936524 |
T |
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| Q |
298 |
tattcggattcttaggtggcaatttcaagaggtttaaatgggattggacttgcc |
351 |
Q |
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| T |
37936523 |
tattcggattcttaggtggcaatttcaagaggtttaaatgggattggacttgcc |
37936470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 309 - 347
Target Start/End: Complemental strand, 37925345 - 37925307
Alignment:
| Q |
309 |
ttaggtggcaatttcaagaggtttaaatgggattggact |
347 |
Q |
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| T |
37925345 |
ttaggtggcaatttcaagaggattaaatggcattggact |
37925307 |
T |
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