View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1946_low_69 (Length: 357)
Name: NF1946_low_69
Description: NF1946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1946_low_69 |
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| [»] scaffold0186 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 280; Significance: 1e-157; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 13 - 340
Target Start/End: Original strand, 29488128 - 29488455
Alignment:
| Q |
13 |
aatatgaaaatgactaactttataaatatctagcactagccagttctcactcgacaacttgggattttttacaatcatggcaaacgaggtaattctgtta |
112 |
Q |
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|||||||||| ||| |||| ||||||| |||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
29488128 |
aatatgaaaacgacccacttcataaataactagcactagccagttctcactcggcaacttaggattttttacaatcatggcaaacgaggtaattctgtta |
29488227 |
T |
|
| Q |
113 |
gatacatgggctagcatgtttggtatgagagcaagaattgcattagctgaaaagagtgttaaatatgagtacaaagaagaagatcttagaaataagagtc |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
29488228 |
gatacatgggctagcatgtttggtatgagagcaagaattgcattagctgaaaagagtgttaaatatgagtacaaagaagaagatctcagaaataagagtc |
29488327 |
T |
|
| Q |
213 |
ctttacttcttcaaatgaatccaattcataagaagattccagttcttatccataatggaaaatccatttgcgaatctgcaattattgtgcaatacataga |
312 |
Q |
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||||||||||||||||||| |||||||| || |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
29488328 |
ctttacttcttcaaatgaacccaattcacaacaagattccagttcttatccataatggaaaatccatttgtgaatctgcaattattgtgcaatacataga |
29488427 |
T |
|
| Q |
313 |
tgaagtttggaatgataaagcttcattc |
340 |
Q |
| |
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|||||||||||||||||||||||||||| |
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| T |
29488428 |
tgaagtttggaatgataaagcttcattc |
29488455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 42 - 340
Target Start/End: Complemental strand, 30256917 - 30256617
Alignment:
| Q |
42 |
ctagcactagccagttctcactcgacaacttgggattt---tttacaatcatggcaaacgaggtaattctgttagatacatgggctagcatgtttggtat |
138 |
Q |
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|||||||||| ||||||||||||||| |||| |||||| ||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| |
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| T |
30256917 |
ctagcactagtcagttctcactcgactacttaggatttgtttttacaatcatggcaaacgaggtaattctgtcagatacatgggctagcgtgtttggtat |
30256818 |
T |
|
| Q |
139 |
gagagcaagaattgcattagctgaaaagagtgttaaatatgagtacaaagaagaagatcttagaaataagagtcctttacttcttcaaatgaatccaatt |
238 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
30256817 |
gagagcaagaattgcattagctgaaaagagtgttaaatatgagtacaaagaagaagatcttagaaataagagtcctttacttcttc-aatgaatccaatt |
30256719 |
T |
|
| Q |
239 |
cataagaagattccagttcttatccataatggaaaatccatttgcgaatctgcaattattgtgcaatacatagatgaagtttggaatgataaagcttcat |
338 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30256718 |
cacaagaagattccagttcttatccataatggaaaatccatttgtgaatctgcaattattgtgcaatacatagatgaagtttggaatgataaagcttcat |
30256619 |
T |
|
| Q |
339 |
tc |
340 |
Q |
| |
|
|| |
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|
| T |
30256618 |
tc |
30256617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 87 - 340
Target Start/End: Original strand, 29502400 - 29502653
Alignment:
| Q |
87 |
tcatggcaaacgaggtaattctgttagatacatgggctagcatgtttggtatgagagcaagaattgcattagctgaaaagagtgttaaatatgagtacaa |
186 |
Q |
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||||||||||||| || ||||||| ||||||||| |||||||||||| ||||||| | ||||||||||||||||| ||||||||||| |||| || |
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| T |
29502400 |
tcatggcaaacgaagtggttctgttggatacatggtttagcatgtttgggatgagagttaagattgcattagctgaaaaaagtgttaaatacgagtgtaa |
29502499 |
T |
|
| Q |
187 |
agaagaagatcttagaaataagagtcctttacttcttcaaatgaatccaattcataagaagattccagttcttatccataatggaaaatccatttgcgaa |
286 |
Q |
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||||||| |||| |||||||||||||||||||||||| ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
29502500 |
agaagaaaatctcagaaataagagtcctttacttcttgaaatgaacccaattcacaagaagattccagttcttatccataatggaaaatccatttgtgaa |
29502599 |
T |
|
| Q |
287 |
tctgcaattattgtgcaatacatagatgaagtttggaatgataaagcttcattc |
340 |
Q |
| |
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|||||||| |||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
29502600 |
tctgcaatcattgtgcagtacatagatgaagtttggaatgataaagcttcattc |
29502653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 82 - 340
Target Start/End: Original strand, 29490294 - 29490552
Alignment:
| Q |
82 |
tacaatcatggcaaacgaggtaattctgttagatacatgggctagcatgtttggtatgagagcaagaattgcattagctgaaaagagtgttaaatatgag |
181 |
Q |
| |
|
|||||||||||||||||||||| || |||| |||||||||| |||||||||||||||||| | ||||||||||||||||||||| | ||| |||||||| |
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| T |
29490294 |
tacaatcatggcaaacgaggtagttttgttggatacatgggttagcatgtttggtatgagggttagaattgcattagctgaaaagggagttcaatatgag |
29490393 |
T |
|
| Q |
182 |
tacaaagaagaagatcttagaaataagagtcctttacttcttcaaatgaatccaattcataagaagattccagttcttatccataatggaaaatccattt |
281 |
Q |
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|||||||||||| |||||||| |||| |||||| |||||||||| |||||||||||||||||||| |||||||||||||| |||||||||||| | ||| |
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| T |
29490394 |
tacaaagaagaaaatcttagagataaaagtcctatacttcttcagatgaatccaattcataagaaaattccagttcttattcataatggaaaacctgttt |
29490493 |
T |
|
| Q |
282 |
gcgaatctgcaattattgtgcaatacatagatgaagtttggaatgataaagcttcattc |
340 |
Q |
| |
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| ||||| || |||||||| || || |||||||| |||||||||||||||||| ||||| |
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| T |
29490494 |
gtgaatcagctattattgtccagtatatagatgaggtttggaatgataaagctccattc |
29490552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 206 - 328
Target Start/End: Complemental strand, 29505581 - 29505459
Alignment:
| Q |
206 |
aagagtcctttacttcttcaaatgaatccaattcataagaagattccagttcttatccataatggaaaatccatttgcgaatctgcaattattgtgcaat |
305 |
Q |
| |
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|||||||||||||| || ||||||||||||||||| ||||| ||||||||||| ||||||||||| ||||||||||| || || || |||||| ||| |
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| T |
29505581 |
aagagtcctttactcctacaaatgaatccaattcacaagaaaattccagttctaatccataatggcaaatccatttgtgagtcactaaatattgttgaat |
29505482 |
T |
|
| Q |
306 |
acatagatgaagtttggaatgat |
328 |
Q |
| |
|
| || ||||| |||||||||||| |
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| T |
29505481 |
atattgatgaggtttggaatgat |
29505459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 156 - 327
Target Start/End: Complemental strand, 29511271 - 29511100
Alignment:
| Q |
156 |
tagctgaaaagagtgttaaatatgagtacaaagaagaagatcttagaaataagagtcctttacttcttcaaatgaatccaattcataagaagattccagt |
255 |
Q |
| |
|
||||||||||| || | || |||||||||||||||||||| | || || ||||| ||||| | | |||||||| || |||||||||| || ||||| |
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|
| T |
29511271 |
tagctgaaaagggtatcaagcatgagtacaaagaagaagatttaaggaacaagagccctttgttgttacaaatgaaccctgttcataagaaaatcccagt |
29511172 |
T |
|
| Q |
256 |
tcttatccataatggaaaatccatttgcgaatctgcaattattgtgcaatacatagatgaagtttggaatga |
327 |
Q |
| |
|
|||||| |||||||| ||||| ||||| |||||| |||| ||| ||||| || ||||||||||||||||| |
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| T |
29511171 |
tcttattcataatggtaaatcaatttgtgaatctttaattgctgttcaatatattgatgaagtttggaatga |
29511100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 237 - 327
Target Start/End: Complemental strand, 29549205 - 29549115
Alignment:
| Q |
237 |
ttcataagaagattccagttcttatccataatggaaaatccatttgcgaatctgcaattattgtgcaatacatagatgaagtttggaatga |
327 |
Q |
| |
|
|||| ||||| || || |||||||| |||||||||||| ||||||| |||||| |||| ||| ||||| || ||||||||||||||||| |
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|
| T |
29549205 |
ttcagaagaaaatccctgttcttattcataatggaaaacccatttgtgaatctttaattgctgttcaatatattgatgaagtttggaatga |
29549115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0186 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: scaffold0186
Description:
Target: scaffold0186; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 128 - 274
Target Start/End: Complemental strand, 9357 - 9211
Alignment:
| Q |
128 |
atgtttggtatgagagcaagaattgcattagctgaaaagagtgttaaatatgagtacaaagaagaagatcttagaaataagagtcctttacttcttcaaa |
227 |
Q |
| |
|
|||||||||||||||||||| || ||||| |||||||| | | || ||||||||||| |||||||||||| ||| ||||| | | ||| | ||| |
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|
| T |
9357 |
atgtttggtatgagagcaaggatagcattggctgaaaaaggcataaagtatgagtacaaggaagaagatcttgaaaacaagagccaaatgcttttgaaaa |
9258 |
T |
|
| Q |
228 |
tgaatccaattcataagaagattccagttcttatccataatggaaaa |
274 |
Q |
| |
|
|||| |||||||| ||||||||||| |||||||||||||| |||||| |
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|
| T |
9257 |
tgaacccaattcacaagaagattcctgttcttatccataagggaaaa |
9211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 128 - 274
Target Start/End: Complemental strand, 18874854 - 18874708
Alignment:
| Q |
128 |
atgtttggtatgagagcaagaattgcattagctgaaaagagtgttaaatatgagtacaaagaagaagatcttagaaataagagtcctttacttcttcaaa |
227 |
Q |
| |
|
|||||||||||||||||||| || ||||| |||||||| | | || ||||| ||||| |||||||||||| ||| ||||| | | ||| | ||| |
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| T |
18874854 |
atgtttggtatgagagcaaggatagcattggctgaaaaaggcataaagtatgaatacaaggaagaagatcttgaaaacaagagccaaatgcttttgaaaa |
18874755 |
T |
|
| Q |
228 |
tgaatccaattcataagaagattccagttcttatccataatggaaaa |
274 |
Q |
| |
|
|||| |||||||| ||||||||||| |||||||||||||| |||||| |
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| T |
18874754 |
tgaacccaattcacaagaagattcctgttcttatccataagggaaaa |
18874708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 242 - 301
Target Start/End: Original strand, 49721337 - 49721396
Alignment:
| Q |
242 |
aagaagattccagttcttatccataatggaaaatccatttgcgaatctgcaattattgtg |
301 |
Q |
| |
|
|||||||| |||||||| ||| ||||||| ||| ||||||| |||||||||||||||||| |
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|
| T |
49721337 |
aagaagatcccagttctcatcaataatggcaaacccatttgtgaatctgcaattattgtg |
49721396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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