View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1946_low_7 (Length: 666)
Name: NF1946_low_7
Description: NF1946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1946_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 320; Significance: 1e-180; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 288 - 647
Target Start/End: Complemental strand, 3820699 - 3820340
Alignment:
| Q |
288 |
catcaacttttattgatgaaaaacttttatatataaataaaatcaaagagattataatttaacaaaatcactttaactcaacatgatttcatcaatctca |
387 |
Q |
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| T |
3820699 |
catcaacttttattgatcaaaaacttttatatataaataaaatcaaagagattataatttaacaaaatcacgttaactcaatgtgatttcatcaatctca |
3820600 |
T |
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| Q |
388 |
taattcacaaccaaacaaaacatgctatataagcatctnnnnnnnntctaaattgcctattgaaaatctttgtttagccatattaggcctagactaggcc |
487 |
Q |
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| T |
3820599 |
taattcacaaccaaacaaaacatgctatataagcatctaaaaaaaatctaaattgcctattgaaaatctttgtttagccatattaggcctagactaggcc |
3820500 |
T |
|
| Q |
488 |
atatgcatcaataagatagccttttttcatgtgacaatcaccccctaccactaataccaatctcaaacctaatggttttgaattaaccatgtgttcctaa |
587 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3820499 |
atatgcatcaataagatagccttttttcatgtgacaatcaccccctaccactaataccaatctcaaacctaatggttttgaattaaccatgtgttcctaa |
3820400 |
T |
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| Q |
588 |
aatgcagcttagaaacgtcgaaaaagatgttgcaaagaaatgtctgaatggtagggcttg |
647 |
Q |
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| T |
3820399 |
aatgcagcttagaaacgtcgaaaaagatgttgcaaagaaatgtctgaatggtagggcttg |
3820340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 17 - 227
Target Start/End: Complemental strand, 3820970 - 3820760
Alignment:
| Q |
17 |
atgaagagttgattgaatgttgaaaagtcgtaagaggagagagagaatgaagagttgattggatgttcaaaagttaatgatgtctaaatatcattgttga |
116 |
Q |
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| T |
3820970 |
atgaagagttgattgaatgttgaaaagtcgtaagaggagagagagaatgaagagttgattggatgttcaaaagttaatgatgtctaaatatcattgttga |
3820871 |
T |
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| Q |
117 |
tttacaatttgtnnnnnnntattctatatttatttattataataagaaataaaaagtgaaaattagaaccatgcataagatataatgaatgcttaaaatc |
216 |
Q |
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| T |
3820870 |
tttacaatttgtaaaaaaatattctatatttatttattataataagaaataaaaagtgaaaattagaaccatgcataagatataatgaatgcttaaaatc |
3820771 |
T |
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| Q |
217 |
agctttacgtg |
227 |
Q |
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||| ||||||| |
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| T |
3820770 |
agccttacgtg |
3820760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 53 - 90
Target Start/End: Complemental strand, 3820980 - 3820943
Alignment:
| Q |
53 |
gagagagagaatgaagagttgattggatgttcaaaagt |
90 |
Q |
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| T |
3820980 |
gagagagagaatgaagagttgattgaatgttgaaaagt |
3820943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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