View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1946_low_70 (Length: 356)

Name: NF1946_low_70
Description: NF1946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1946_low_70
NF1946_low_70
[»] chr4 (19 HSPs)
chr4 (150-227)||(4622798-4622875)
chr4 (26-77)||(4622952-4623003)
chr4 (150-228)||(4634232-4634311)
chr4 (150-228)||(9661802-9661881)
chr4 (164-228)||(1657656-1657721)
chr4 (164-228)||(16991835-16991900)
chr4 (157-228)||(11817028-11817100)
chr4 (188-227)||(44021652-44021691)
chr4 (186-229)||(46729004-46729047)
chr4 (301-343)||(4622682-4622724)
chr4 (186-228)||(41486561-41486603)
chr4 (169-225)||(14542601-14542658)
chr4 (164-228)||(28588524-28588589)
chr4 (164-226)||(54420800-54420863)
chr4 (186-228)||(3673609-3673651)
chr4 (192-225)||(4959664-4959697)
chr4 (157-228)||(3168996-3169068)
chr4 (189-229)||(18935648-18935688)
chr4 (150-228)||(43156725-43156805)
[»] chr5 (14 HSPs)
chr5 (150-228)||(31645778-31645857)
chr5 (150-228)||(6887264-6887343)
chr5 (164-228)||(34894002-34894067)
chr5 (150-228)||(33486656-33486735)
chr5 (164-228)||(28618567-28618632)
chr5 (187-228)||(29310435-29310476)
chr5 (186-228)||(41554472-41554514)
chr5 (156-224)||(41988139-41988208)
chr5 (186-228)||(19646127-19646169)
chr5 (193-230)||(2415393-2415430)
chr5 (156-228)||(41357993-41358066)
chr5 (157-228)||(8812238-8812310)
chr5 (156-228)||(15710495-15710570)
chr5 (186-226)||(37424979-37425019)
[»] chr1 (13 HSPs)
chr1 (150-225)||(27469821-27469897)
chr1 (150-228)||(22344998-22345077)
chr1 (156-230)||(52839378-52839453)
chr1 (164-226)||(6212974-6213037)
chr1 (150-215)||(14717341-14717407)
chr1 (185-227)||(44514077-44514119)
chr1 (164-228)||(30853869-30853934)
chr1 (156-228)||(38646539-38646612)
chr1 (158-228)||(13691844-13691916)
chr1 (186-230)||(52839507-52839551)
chr1 (187-228)||(5832220-5832261)
chr1 (164-228)||(33703595-33703660)
chr1 (192-228)||(44562835-44562871)
[»] chr7 (17 HSPs)
chr7 (150-228)||(40775216-40775295)
chr7 (185-228)||(28015341-28015384)
chr7 (159-226)||(41748589-41748657)
chr7 (186-228)||(24045318-24045360)
chr7 (186-228)||(47749720-47749762)
chr7 (186-227)||(16263373-16263414)
chr7 (164-228)||(24470358-24470423)
chr7 (164-228)||(24475306-24475371)
chr7 (192-225)||(47156388-47156421)
chr7 (186-226)||(23732481-23732521)
chr7 (189-228)||(30992909-30992948)
chr7 (167-228)||(38649444-38649506)
chr7 (157-213)||(23177683-23177740)
chr7 (192-225)||(25855309-25855342)
chr7 (164-225)||(43483558-43483619)
chr7 (164-228)||(49166890-49166955)
chr7 (186-230)||(35141837-35141881)
[»] chr3 (14 HSPs)
chr3 (150-228)||(1165482-1165561)
chr3 (164-228)||(20201144-20201209)
chr3 (164-228)||(20203326-20203391)
chr3 (150-228)||(22844000-22844079)
chr3 (150-228)||(42106060-42106139)
chr3 (150-228)||(43029632-43029711)
chr3 (167-228)||(50460160-50460222)
chr3 (156-228)||(1220301-1220374)
chr3 (164-228)||(41882494-41882559)
chr3 (164-228)||(50519753-50519818)
chr3 (150-228)||(913404-913483)
chr3 (170-228)||(1806546-1806605)
chr3 (164-229)||(43839602-43839667)
chr3 (164-228)||(22286835-22286900)
[»] chr2 (25 HSPs)
chr2 (150-228)||(3390381-3390460)
chr2 (150-228)||(25771394-25771473)
chr2 (167-228)||(6089859-6089921)
chr2 (150-228)||(27024225-27024304)
chr2 (150-228)||(40125338-40125417)
chr2 (158-227)||(3464916-3464986)
chr2 (157-227)||(25237413-25237484)
chr2 (158-215)||(31263053-31263111)
chr2 (186-228)||(37883639-37883681)
chr2 (164-228)||(10589001-10589066)
chr2 (185-226)||(15674062-15674103)
chr2 (164-228)||(25516457-25516522)
chr2 (164-228)||(41176825-41176890)
chr2 (164-228)||(44167795-44167860)
chr2 (189-228)||(7640442-7640481)
chr2 (185-228)||(16880045-16880088)
chr2 (186-228)||(26491289-26491331)
chr2 (164-229)||(43566840-43566905)
chr2 (164-228)||(3602948-3603013)
chr2 (192-225)||(9715634-9715667)
chr2 (185-226)||(17037737-17037778)
chr2 (164-228)||(25623131-25623196)
chr2 (164-228)||(27191421-27191486)
chr2 (164-228)||(27841235-27841300)
chr2 (186-227)||(42105839-42105880)
[»] chr8 (13 HSPs)
chr8 (164-228)||(31874047-31874112)
chr8 (157-228)||(9269977-9270049)
chr8 (164-227)||(13864322-13864386)
chr8 (150-225)||(16937428-16937504)
chr8 (157-228)||(23766698-23766770)
chr8 (186-228)||(10042747-10042789)
chr8 (169-225)||(44295284-44295341)
chr8 (150-228)||(15665488-15665567)
chr8 (167-228)||(9992631-9992693)
chr8 (186-224)||(27534489-27534527)
chr8 (186-228)||(37658952-37658994)
chr8 (164-228)||(36545867-36545932)
chr8 (168-212)||(39067816-39067860)
[»] chr6 (9 HSPs)
chr6 (156-228)||(32457601-32457674)
chr6 (150-228)||(16913277-16913356)
chr6 (189-228)||(19759777-19759816)
chr6 (164-226)||(33194568-33194631)
chr6 (186-228)||(12576564-12576606)
chr6 (187-228)||(32804281-32804322)
chr6 (165-225)||(34020582-34020643)
chr6 (188-228)||(548951-548991)
chr6 (150-228)||(20844956-20845036)
[»] scaffold0045 (1 HSPs)
scaffold0045 (164-226)||(9736-9799)
[»] scaffold1294 (1 HSPs)
scaffold1294 (150-225)||(729-805)
[»] scaffold0012 (1 HSPs)
scaffold0012 (150-213)||(244583-244647)


Alignment Details
Target: chr4 (Bit Score: 70; Significance: 2e-31; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 150 - 227
Target Start/End: Complemental strand, 4622875 - 4622798
Alignment:
Q  150 cgtcagcaaaactttagtttcttcttcttcatcaataaagaggggtgatttaaggtcaatttttgatccaaaatcacc 227  Q
    ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4622875 cgtcaccaaaactctagtttcttcttcttcatcaataaagaggggtgatttaaggtcaatttttgatccaaaatcacc 4622798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 26 - 77
Target Start/End: Complemental strand, 4623003 - 4622952
Alignment:
Q  26 atgtcatcatgaccaccaataatactgtgtgagcttggtcattaatcttgaa 77  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4623003 atgtcatcatgaccaccaataatactgtgtgagcttggtcattaatcttgaa 4622952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 150 - 228
Target Start/End: Original strand, 4634232 - 4634311
Alignment:
Q  150 cgtcagcaaaactttagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 228  Q
    ||||| ||||||  ||||||||||| ||||||| || |||||||||||||||||||||||||||||| ||||||||||||    
T  4634232 cgtcaccaaaaccctagtttcttctccttcatccatcaaagaggggtgatttaaggtcaatttttgacccaaaatcaccc 4634311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 150 - 228
Target Start/End: Original strand, 9661802 - 9661881
Alignment:
Q  150 cgtcagcaaaactttagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 228  Q
    ||||| ||||||  ||||||||||| ||||||| || |||||||||||||||| ||||||||||||| ||||||||||||    
T  9661802 cgtcaccaaaaccctagtttcttctccttcatccatcaaagaggggtgatttagggtcaatttttgacccaaaatcaccc 9661881  T

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Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 164 - 228
Target Start/End: Complemental strand, 1657721 - 1657656
Alignment:
Q  164 tagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 228  Q
    ||||||||||| ||||||| || |||||| ||||||||| ||||||||||||| ||||||||||||    
T  1657721 tagtttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcaccc 1657656  T

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Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 164 - 228
Target Start/End: Original strand, 16991835 - 16991900
Alignment:
Q  164 tagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 228  Q
    ||||||||||| ||||||| || |||||| ||||||||| ||||||||||||| ||||||||||||    
T  16991835 tagtttcttctccttcatccatcaaagagcggtgatttagggtcaatttttgacccaaaatcaccc 16991900  T

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Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 157 - 228
Target Start/End: Original strand, 11817028 - 11817100
Alignment:
Q  157 aaaactttagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 228  Q
    ||||||||| |||||||||||||||| || ||||||||||| |||| ||| || |||||| ||||||||||||    
T  11817028 aaaactttaatttcttcttcttcatccatcaaagaggggtggtttagggttaagttttgacccaaaatcaccc 11817100  T

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Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 188 - 227
Target Start/End: Complemental strand, 44021691 - 44021652
Alignment:
Q  188 agaggggtgatttaaggtcaatttttgatccaaaatcacc 227  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  44021691 agaggggtggtttaaggtcaatttttgatccaaaatcacc 44021652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 186 - 229
Target Start/End: Complemental strand, 46729047 - 46729004
Alignment:
Q  186 aaagaggggtgatttaaggtcaatttttgatccaaaatcaccct 229  Q
    |||||||||||||||| ||||||||||||| |||||||||||||    
T  46729047 aaagaggggtgatttagggtcaatttttgacccaaaatcaccct 46729004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 301 - 343
Target Start/End: Complemental strand, 4622724 - 4622682
Alignment:
Q  301 gtgatttcgtcgtcctagtgcgacgtgggtgtgtttgtcgtct 343  Q
    |||||||||||||| |||||||||||||| |||||||||||||    
T  4622724 gtgatttcgtcgtcttagtgcgacgtgggagtgtttgtcgtct 4622682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 228
Target Start/End: Original strand, 41486561 - 41486603
Alignment:
Q  186 aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 228  Q
    |||||||||| ||||| ||||||||||||||||||||||||||    
T  41486561 aaagaggggttatttagggtcaatttttgatccaaaatcaccc 41486603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 169 - 225
Target Start/End: Complemental strand, 14542658 - 14542601
Alignment:
Q  169 tcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatca 225  Q
    |||||| ||||||| || |||||||||||||||| ||||||||||||| |||||||||    
T  14542658 tcttctccttcatccatcaaagaggggtgatttagggtcaatttttgacccaaaatca 14542601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 164 - 228
Target Start/End: Original strand, 28588524 - 28588589
Alignment:
Q  164 tagtttcttcttcttcatcaataa-agaggggtgatttaaggtcaatttttgatccaaaatcaccc 228  Q
    ||||||||||| ||||||| || | ||| |||||||||| ||||||||||||| ||||||||||||    
T  28588524 tagtttcttctccttcatccatcatagaagggtgatttagggtcaatttttgacccaaaatcaccc 28588589  T

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Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 164 - 226
Target Start/End: Complemental strand, 54420863 - 54420800
Alignment:
Q  164 tagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcac 226  Q
    ||||||||||| ||||||| |  ||||| |||||||||| ||||||||||||| ||||||||||    
T  54420863 tagtttcttctccttcatccaccaaagatgggtgatttagggtcaatttttgacccaaaatcac 54420800  T

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Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 228
Target Start/End: Original strand, 3673609 - 3673651
Alignment:
Q  186 aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 228  Q
    |||||||||||||||| ||||||||||||| || |||||||||    
T  3673609 aaagaggggtgatttagggtcaatttttgaccccaaatcaccc 3673651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 225
Target Start/End: Complemental strand, 4959697 - 4959664
Alignment:
Q  192 gggtgatttaaggtcaatttttgatccaaaatca 225  Q
    |||||||||| |||||||||||||||||||||||    
T  4959697 gggtgatttagggtcaatttttgatccaaaatca 4959664  T

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Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 157 - 228
Target Start/End: Original strand, 3168996 - 3169068
Alignment:
Q  157 aaaactttagtttcttcttcttcat-caataaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 228  Q
    |||||| |||||| ||||||||||| ||  |||||| |||||||||  ||||||| |||| ||||||||||||    
T  3168996 aaaactctagttttttcttcttcattcaccaaagagaggtgatttagagtcaattattgacccaaaatcaccc 3169068  T

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Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 189 - 229
Target Start/End: Original strand, 18935648 - 18935688
Alignment:
Q  189 gaggggtgatttaaggtcaatttttgatccaaaatcaccct 229  Q
    ||||||||||||||||||||||||||| | | |||||||||    
T  18935648 gaggggtgatttaaggtcaatttttgacctagaatcaccct 18935688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 150 - 228
Target Start/End: Original strand, 43156725 - 43156805
Alignment:
Q  150 cgtcagcaaaactttagtttcttcttcttcatcaat-aaagaggggtgatttaagg-tcaatttttgatccaaaatcaccc 228  Q
    ||||| ||||||||   |||||||| ||||||| |  |||||||||||||||| || ||||||||||| ||||||||||||    
T  43156725 cgtcaccaaaacttagttttcttctccttcatccaccaaagaggggtgatttacgggtcaatttttgacccaaaatcaccc 43156805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 150 - 228
Target Start/End: Original strand, 31645778 - 31645857
Alignment:
Q  150 cgtcagcaaaactttagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 228  Q
    ||||| ||||||  ||||||||||| ||||||| || |||||||||||||||| ||||||||||||||||||||||||||    
T  31645778 cgtcaccaaaaccctagtttcttctccttcatccattaaagaggggtgatttagggtcaatttttgatccaaaatcaccc 31645857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 150 - 228
Target Start/End: Complemental strand, 6887343 - 6887264
Alignment:
Q  150 cgtcagcaaaactttagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 228  Q
    ||||| ||||||| ||||||||||| ||||||| || |||||||||||||||| ||||||||||| | ||||||||||||    
T  6887343 cgtcaccaaaactctagtttcttctccttcatccatcaaagaggggtgatttagggtcaatttttaacccaaaatcaccc 6887264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 164 - 228
Target Start/End: Complemental strand, 34894067 - 34894002
Alignment:
Q  164 tagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 228  Q
    ||||||||||| ||||||| || |||||||||||||||| ||||||||||||| ||||||||||||    
T  34894067 tagtttcttctccttcatccatcaaagaggggtgatttacggtcaatttttgacccaaaatcaccc 34894002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 150 - 228
Target Start/End: Complemental strand, 33486735 - 33486656
Alignment:
Q  150 cgtcagcaaaactttagtttcttcttcttcatcaa-taaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 228  Q
    ||||| |||||| ||| |||||||  ||||||| | ||||||||||||||||| ||||||||||||| ||||||||||||    
T  33486735 cgtcaccaaaaccttaatttcttcaccttcatccactaaagaggggtgatttagggtcaatttttgacccaaaatcaccc 33486656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 164 - 228
Target Start/End: Original strand, 28618567 - 28618632
Alignment:
Q  164 tagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 228  Q
    ||||||||||| ||||||||   |||||||||||||||||||||||||||| | ||||||||||||    
T  28618567 tagtttcttctccttcatcagccaaagaggggtgatttaaggtcaatttttaacccaaaatcaccc 28618632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 187 - 228
Target Start/End: Complemental strand, 29310476 - 29310435
Alignment:
Q  187 aagaggggtgatttaaggtcaatttttgatccaaaatcaccc 228  Q
    ||||||||||||||| ||||||||||||||||||||||||||    
T  29310476 aagaggggtgatttagggtcaatttttgatccaaaatcaccc 29310435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 228
Target Start/End: Original strand, 41554472 - 41554514
Alignment:
Q  186 aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 228  Q
    |||||||||||||||| | ||||||||||||||||||||||||    
T  41554472 aaagaggggtgatttaggatcaatttttgatccaaaatcaccc 41554514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 156 - 224
Target Start/End: Original strand, 41988139 - 41988208
Alignment:
Q  156 caaaactttagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatc 224  Q
    ||||||| ||||||||||| ||||| | || |||||||||||||||| | |||||||||||| |||||||    
T  41988139 caaaactctagtttcttctccttcacctatcaaagaggggtgatttaggatcaatttttgattcaaaatc 41988208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 228
Target Start/End: Complemental strand, 19646169 - 19646127
Alignment:
Q  186 aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 228  Q
    ||||||||||| |||||||||||| ||||| ||||||||||||    
T  19646169 aaagaggggtggtttaaggtcaatgtttgacccaaaatcaccc 19646127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 230
Target Start/End: Original strand, 2415393 - 2415430
Alignment:
Q  193 ggtgatttaaggtcaatttttgatccaaaatcaccctt 230  Q
    ||||||||| ||||||||||||| ||||||||||||||    
T  2415393 ggtgatttagggtcaatttttgacccaaaatcaccctt 2415430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 228
Target Start/End: Original strand, 41357993 - 41358066
Alignment:
Q  156 caaaactttagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 228  Q
    ||||||| ||||||||| | ||||||  || |||||  ||||||||| ||||||||||||| ||||||||||||    
T  41357993 caaaactctagtttcttttccttcatagatcaaagataggtgatttagggtcaatttttgacccaaaatcaccc 41358066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 157 - 228
Target Start/End: Complemental strand, 8812310 - 8812238
Alignment:
Q  157 aaaactttagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 228  Q
    |||||| |||||||||| |||||||| |  ||| ||||||||| || ||||||||||| | ||||||||||||    
T  8812310 aaaactctagtttcttcatcttcatccaccaaaaaggggtgatatagggtcaatttttaacccaaaatcaccc 8812238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 156 - 228
Target Start/End: Original strand, 15710495 - 15710570
Alignment:
Q  156 caaaactttagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaa--tttttgatccaaaatcaccc 228  Q
    ||||||| ||||||||| | ||||||| || ||||| |||||||||| ||||||  ||||| ||||||||||||||    
T  15710495 caaaactctagtttcttttccttcatccatcaaagatgggtgatttatggtcaattttttttatccaaaatcaccc 15710570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 186 - 226
Target Start/End: Original strand, 37424979 - 37425019
Alignment:
Q  186 aaagaggggtgatttaaggtcaatttttgatccaaaatcac 226  Q
    |||||||||||||||| ||||||||| ||| ||||||||||    
T  37424979 aaagaggggtgatttatggtcaatttctgacccaaaatcac 37425019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 150 - 225
Target Start/End: Complemental strand, 27469897 - 27469821
Alignment:
Q  150 cgtcagcaaaactttagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatca 225  Q
    ||||| ||||| | ||||||||||||||||||| || ||||||||||||||||||||||||||| || |||||||||    
T  27469897 cgtcaccaaaattctagtttcttcttcttcatccattaaagaggggtgatttaaggtcaattttcgaaccaaaatca 27469821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 150 - 228
Target Start/End: Complemental strand, 22345077 - 22344998
Alignment:
Q  150 cgtcagcaaaactttagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 228  Q
    ||||| ||||||  ||||||||||| ||||||| || |||||||||||||||| | ||||||||||| ||||||||||||    
T  22345077 cgtcaccaaaaccctagtttcttctccttcatccatcaaagaggggtgatttaggttcaatttttgacccaaaatcaccc 22344998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 156 - 230
Target Start/End: Original strand, 52839378 - 52839453
Alignment:
Q  156 caaaactttagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcaccctt 230  Q
    ||||||| |||||| ||||  |||||| || |||||||||||||||| ||||||||||||| ||||||||||||||    
T  52839378 caaaactctagtttgttctctttcatccattaaagaggggtgatttagggtcaatttttgacccaaaatcaccctt 52839453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 164 - 226
Target Start/End: Complemental strand, 6213037 - 6212974
Alignment:
Q  164 tagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcac 226  Q
    ||||||||||| |||| || || |||||||||||||||| ||||||||||||| ||||||||||    
T  6213037 tagtttcttctccttcgtccatcaaagaggggtgatttatggtcaatttttgacccaaaatcac 6212974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 150 - 215
Target Start/End: Complemental strand, 14717407 - 14717341
Alignment:
Q  150 cgtcagcaaaactttagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttga 215  Q
    ||||| ||||||| ||||||||||| ||||||| |  |||||||||||||||| |||||||||||||    
T  14717407 cgtcaccaaaactctagtttcttctccttcatccaccaaagaggggtgatttagggtcaatttttga 14717341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 185 - 227
Target Start/End: Complemental strand, 44514119 - 44514077
Alignment:
Q  185 taaagaggggtgatttaaggtcaatttttgatccaaaatcacc 227  Q
    ||||||||||||||||| ||||||||||||| |||||||||||    
T  44514119 taaagaggggtgatttagggtcaatttttgacccaaaatcacc 44514077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 164 - 228
Target Start/End: Complemental strand, 30853934 - 30853869
Alignment:
Q  164 tagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 228  Q
    ||||||||||| ||||||| |  ||||||| |||||| ||||||||||||||| ||||||||||||    
T  30853934 tagtttcttctccttcatccaccaaagaggtgtgattcaaggtcaatttttgacccaaaatcaccc 30853869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 156 - 228
Target Start/End: Original strand, 38646539 - 38646612
Alignment:
Q  156 caaaactttagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 228  Q
    ||||||| || ||| |||| ||||||| || ||||||| |||||||| ||||||||||||| ||||||||||||    
T  38646539 caaaactctaattttttctccttcatctatcaaagaggagtgatttatggtcaatttttgacccaaaatcaccc 38646612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 158 - 228
Target Start/End: Complemental strand, 13691916 - 13691844
Alignment:
Q  158 aaactttagtttcttcttcttcatcaa-taaagagggg-tgatttaaggtcaatttttgatccaaaatcaccc 228  Q
    |||| ||| |||||||||||||||| | |||||||||| || |||| ||||||||||||| ||||||||||||    
T  13691916 aaaccttaatttcttcttcttcatccactaaagagggggtggtttagggtcaatttttgacccaaaatcaccc 13691844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 230
Target Start/End: Original strand, 52839507 - 52839551
Alignment:
Q  186 aaagaggggtgatttaaggtcaatttttgatccaaaatcaccctt 230  Q
    |||||||||||||||| | ||||||||||| ||||||||||||||    
T  52839507 aaagaggggtgatttatgatcaatttttgacccaaaatcaccctt 52839551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 228
Target Start/End: Original strand, 5832220 - 5832261
Alignment:
Q  187 aagaggggtgatttaaggtcaatttttgatccaaaatcaccc 228  Q
    ||||||||||||||| ||||||||||||| || |||||||||    
T  5832220 aagaggggtgatttagggtcaatttttgaccctaaatcaccc 5832261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 228
Target Start/End: Complemental strand, 33703660 - 33703595
Alignment:
Q  164 tagtttcttcttcttcatcaa-taaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 228  Q
    |||||| |||| ||||||| | ||||||||| ||||||| ||||||||||| | ||||||||||||    
T  33703660 tagttttttctccttcatccactaaagagggatgatttatggtcaattttttacccaaaatcaccc 33703595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 192 - 228
Target Start/End: Complemental strand, 44562871 - 44562835
Alignment:
Q  192 gggtgatttaaggtcaatttttgatccaaaatcaccc 228  Q
    |||||||||| ||||||||||||| ||||||||||||    
T  44562871 gggtgatttagggtcaatttttgacccaaaatcaccc 44562835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 5e-16; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 150 - 228
Target Start/End: Original strand, 40775216 - 40775295
Alignment:
Q  150 cgtcagcaaaactttagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 228  Q
    ||||| ||||||  || |||||||| ||||||| || |||||||||||||||| ||||||||||||||||||||||||||    
T  40775216 cgtcaccaaaaccctaatttcttctccttcatccatcaaagaggggtgatttagggtcaatttttgatccaaaatcaccc 40775295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 185 - 228
Target Start/End: Original strand, 28015341 - 28015384
Alignment:
Q  185 taaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 228  Q
    ||||||||||||||||| ||||||||||||||||||||||||||    
T  28015341 taaagaggggtgatttagggtcaatttttgatccaaaatcaccc 28015384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 159 - 226
Target Start/End: Complemental strand, 41748657 - 41748589
Alignment:
Q  159 aactttagtttcttcttcttcat-caataaagaggggtgatttaaggtcaatttttgatccaaaatcac 226  Q
    |||| |||||||||| ||||||| || |||||||  |||||||| ||||||||||||||||||||||||    
T  41748657 aactctagtttcttcatcttcattcactaaagagatgtgatttacggtcaatttttgatccaaaatcac 41748589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 228
Target Start/End: Complemental strand, 24045360 - 24045318
Alignment:
Q  186 aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 228  Q
    |||||| ||||||||||||||||||||||| ||||||||||||    
T  24045360 aaagagtggtgatttaaggtcaatttttgacccaaaatcaccc 24045318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 228
Target Start/End: Original strand, 47749720 - 47749762
Alignment:
Q  186 aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 228  Q
    |||||||||||||||| ||||||||||||| ||||||||||||    
T  47749720 aaagaggggtgatttatggtcaatttttgacccaaaatcaccc 47749762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 186 - 227
Target Start/End: Original strand, 16263373 - 16263414
Alignment:
Q  186 aaagaggggtgatttaaggtcaatttttgatccaaaatcacc 227  Q
    |||||||||||||||| | |||||||||||||||||||||||    
T  16263373 aaagaggggtgatttaggatcaatttttgatccaaaatcacc 16263414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 164 - 228
Target Start/End: Original strand, 24470358 - 24470423
Alignment:
Q  164 tagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 228  Q
    ||||||||||| ||||||| |  |||||||||||||||| || |||||||||| ||||||||||||    
T  24470358 tagtttcttctccttcatccaccaaagaggggtgatttaggggcaatttttgacccaaaatcaccc 24470423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 164 - 228
Target Start/End: Original strand, 24475306 - 24475371
Alignment:
Q  164 tagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 228  Q
    ||||||||||| ||||||| |  |||||||||||||||| || |||||||||| ||||||||||||    
T  24475306 tagtttcttctccttcatccaccaaagaggggtgatttaggggcaatttttgacccaaaatcaccc 24475371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 192 - 225
Target Start/End: Original strand, 47156388 - 47156421
Alignment:
Q  192 gggtgatttaaggtcaatttttgatccaaaatca 225  Q
    ||||||||||||||||||||||||||||||||||    
T  47156388 gggtgatttaaggtcaatttttgatccaaaatca 47156421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 226
Target Start/End: Complemental strand, 23732521 - 23732481
Alignment:
Q  186 aaagaggggtgatttaaggtcaatttttgatccaaaatcac 226  Q
    ||||||||||||||||||||||||||||||  |||||||||    
T  23732521 aaagaggggtgatttaaggtcaatttttgactcaaaatcac 23732481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 189 - 228
Target Start/End: Complemental strand, 30992948 - 30992909
Alignment:
Q  189 gaggggtgatttaaggtcaatttttgatccaaaatcaccc 228  Q
    ||||||||||||||||| ||||||||| ||||||||||||    
T  30992948 gaggggtgatttaaggttaatttttgacccaaaatcaccc 30992909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 167 - 228
Target Start/End: Complemental strand, 38649506 - 38649444
Alignment:
Q  167 tttcttcttcttcatcaa-taaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 228  Q
    |||||||  ||||||||| |||| ||||||||||||  |||||||||||| ||||||||||||    
T  38649506 tttcttcaccttcatcaactaaaaaggggtgatttagagtcaatttttgacccaaaatcaccc 38649444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 213
Target Start/End: Complemental strand, 23177740 - 23177683
Alignment:
Q  157 aaaactttagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaattttt 213  Q
    |||||| ||||||||||| ||||||| || ||||| | ||||||||||||||||||||    
T  23177740 aaaactctagtttcttctccttcatccattaaagatgagtgatttaaggtcaattttt 23177683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 225
Target Start/End: Complemental strand, 25855342 - 25855309
Alignment:
Q  192 gggtgatttaaggtcaatttttgatccaaaatca 225  Q
    |||||||||| |||||||||||||||||||||||    
T  25855342 gggtgatttagggtcaatttttgatccaaaatca 25855309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 225
Target Start/End: Original strand, 43483558 - 43483619
Alignment:
Q  164 tagtttcttcttcttcatcaataaagaggggtgatttaaggtcaatttttgatccaaaatca 225  Q
    |||||||| | |||||||| |  |||||| |||||||| ||||||||||||||| |||||||    
T  43483558 tagtttctgcatcttcatccactaagaggagtgatttagggtcaatttttgatctaaaatca 43483619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 228
Target Start/End: Original strand, 49166890 - 49166955
Alignment:
Q  164 tagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 228  Q
    ||||||||||| ||||||| |  ||||| |||||||||| ||||||||||||| | ||||||||||    
T  49166890 tagtttcttctccttcatccaccaaagatgggtgatttagggtcaatttttgacctaaaatcaccc 49166955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 186 - 230
Target Start/End: Complemental strand, 35141881 - 35141837
Alignment:
Q  186 aaagaggggtgatttaaggtcaatttttgatccaaaatcaccctt 230  Q
    ||||| |||||||||| ||||||||||||| | ||||||||||||    
T  35141881 aaagaagggtgatttagggtcaatttttgaccaaaaatcaccctt 35141837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 5e-16; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 150 - 228
Target Start/End: Complemental strand, 1165561 - 1165482
Alignment:
Q  150 cgtcagcaaaactttagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 228  Q
    ||||| ||||||  ||||||||||| ||||||| || |||||||||||||||| ||||||||||||| ||||||||||||    
T  1165561 cgtcaccaaaaccctagtttcttctccttcatccatcaaagaggggtgatttagggtcaatttttgacccaaaatcaccc 1165482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 164 - 228
Target Start/End: Complemental strand, 20201209 - 20201144
Alignment:
Q  164 tagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 228  Q
    ||||||||||| ||||||| |  |||||||||||||||| ||||||||||||| ||||||||||||    
T  20201209 tagtttcttctccttcatccaccaaagaggggtgatttagggtcaatttttgacccaaaatcaccc 20201144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 164 - 228
Target Start/End: Complemental strand, 20203391 - 20203326
Alignment:
Q  164 tagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 228  Q
    ||||||||||| ||||||| |  |||||||||||||||| ||||||||||||| ||||||||||||    
T  20203391 tagtttcttctccttcatccaccaaagaggggtgatttagggtcaatttttgacccaaaatcaccc 20203326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 150 - 228
Target Start/End: Original strand, 22844000 - 22844079
Alignment:
Q  150 cgtcagcaaaactttagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 228  Q
    ||||| ||||||  |||||| |||| ||||||  || |||||||| ||||||||||||||||||||| ||||||||||||    
T  22844000 cgtcaccaaaaccctagtttattctccttcattcatcaaagagggctgatttaaggtcaatttttgacccaaaatcaccc 22844079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 150 - 228
Target Start/End: Original strand, 42106060 - 42106139
Alignment:
Q  150 cgtcagcaaaactttagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 228  Q
    ||||| ||||||  |||||||||| |||||||| |  |||||||||||||||| ||||||||||||| | ||||||||||    
T  42106060 cgtcaccaaaaccctagtttcttcatcttcatccaccaaagaggggtgatttagggtcaatttttgacctaaaatcaccc 42106139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 150 - 228
Target Start/End: Original strand, 43029632 - 43029711
Alignment:
Q  150 cgtcagcaaaactttagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 228  Q
    ||||| ||||||  ||||||||||| ||||||| || |||||||||||||||| | ||| ||||||| ||||||||||||    
T  43029632 cgtcaccaaaaccctagtttcttctccttcatccatcaaagaggggtgatttaggatcattttttgacccaaaatcaccc 43029711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 167 - 228
Target Start/End: Original strand, 50460160 - 50460222
Alignment:
Q  167 tttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 228  Q
    |||||||||||||||| || |||||||| |||||||||||||||||||||   ||||||||||    
T  50460160 tttcttcttcttcatccatcaaagagggatgatttaaggtcaatttttgacataaaatcaccc 50460222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 156 - 228
Target Start/End: Complemental strand, 1220374 - 1220301
Alignment:
Q  156 caaaactttagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 228  Q
    ||||||| || |||||||| ||||| | || |||||||||||||||| | |||||||||||| |||||||||||    
T  1220374 caaaactctaatttcttctccttcacctatcaaagaggggtgatttaggatcaatttttgattcaaaatcaccc 1220301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 164 - 228
Target Start/End: Complemental strand, 41882559 - 41882494
Alignment:
Q  164 tagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 228  Q
    ||||||||||| ||||||| || ||||||| |||||||| ||||||||||||| ||||||| ||||    
T  41882559 tagtttcttctccttcatccatcaaagaggagtgatttagggtcaatttttgacccaaaattaccc 41882494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 164 - 228
Target Start/End: Original strand, 50519753 - 50519818
Alignment:
Q  164 tagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 228  Q
    ||||||||||| ||||||| |  ||||| |||||||||| ||||||||||||| ||||||||||||    
T  50519753 tagtttcttctccttcatccaccaaagatgggtgatttagggtcaatttttgacccaaaatcaccc 50519818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 150 - 228
Target Start/End: Complemental strand, 913483 - 913404
Alignment:
Q  150 cgtcagcaaaactttagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 228  Q
    ||||| |||||| ||||||||||| |||||||| |  |||||||||| ||| |  |||||||||||| ||||||||||||    
T  913483 cgtcaccaaaaccttagtttcttcatcttcatccaccaaagaggggtaattcatagtcaatttttgacccaaaatcaccc 913404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 170 - 228
Target Start/End: Complemental strand, 1806605 - 1806546
Alignment:
Q  170 cttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 228  Q
    ||||||||||||| |  ||||||||||| |||| |||||||||||||||| |||||||||    
T  1806605 cttcttcttcatccaccaaagaggggtggtttagggtcaatttttgatcccaaatcaccc 1806546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 229
Target Start/End: Complemental strand, 43839667 - 43839602
Alignment:
Q  164 tagtttcttcttcttcat-caataaagaggggtgatttaaggtcaatttttgatccaaaatcaccct 229  Q
    ||||||||||| |||||| || |||||| |||||||||| ||||||||||||| ||||| |||||||    
T  43839667 tagtttcttctccttcattcactaaagatgggtgatttagggtcaatttttga-ccaaagtcaccct 43839602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 228
Target Start/End: Complemental strand, 22286900 - 22286835
Alignment:
Q  164 tagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 228  Q
    ||||||||||| ||||||| |  |||||||||||||||| ||||||||||||| | ||||| ||||    
T  22286900 tagtttcttctccttcatccaccaaagaggggtgatttagggtcaatttttgacctaaaattaccc 22286835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 150 - 228
Target Start/End: Original strand, 3390381 - 3390460
Alignment:
Q  150 cgtcagcaaaactttagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 228  Q
    ||||| ||||||  ||||||||||| ||||||| || |||||||||||||||| ||||||||||||| ||||||||||||    
T  3390381 cgtcaccaaaaccctagtttcttctccttcatccatcaaagaggggtgatttagggtcaatttttgacccaaaatcaccc 3390460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 150 - 228
Target Start/End: Original strand, 25771394 - 25771473
Alignment:
Q  150 cgtcagcaaaactttagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 228  Q
    ||||| ||||||  ||||||||||| ||||||| || |||||||||||||||| ||||||||||||| ||||||||||||    
T  25771394 cgtcaccaaaaccctagtttcttctccttcatccatcaaagaggggtgatttagggtcaatttttgacccaaaatcaccc 25771473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 167 - 228
Target Start/End: Original strand, 6089859 - 6089921
Alignment:
Q  167 tttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 228  Q
    |||||||| ||||||| || |||||||||||||||||||||||||||||| ||||||||||||    
T  6089859 tttcttctccttcatccatcaaagaggggtgatttaaggtcaatttttgacccaaaatcaccc 6089921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 150 - 228
Target Start/End: Complemental strand, 27024304 - 27024225
Alignment:
Q  150 cgtcagcaaaactttagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 228  Q
    ||||| ||||||| ||||||||||| ||||||| || ||||| |||||||||| ||||| ||||||| ||||||||||||    
T  27024304 cgtcaccaaaactctagtttcttctccttcatccatcaaagatgggtgatttagggtcattttttgacccaaaatcaccc 27024225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 150 - 228
Target Start/End: Original strand, 40125338 - 40125417
Alignment:
Q  150 cgtcagcaaaactttagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 228  Q
    ||||| |||||| |||||||||||| ||||||| |  |||||||||||||||| ||| ||||||||| ||||||||||||    
T  40125338 cgtcatcaaaaccttagtttcttctccttcatccaccaaagaggggtgatttagggttaatttttgacccaaaatcaccc 40125417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 158 - 227
Target Start/End: Original strand, 3464916 - 3464986
Alignment:
Q  158 aaactttagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcacc 227  Q
    ||||| || |||||||| ||||||| |  |||||||||||||||| |||||||||||||||||||||||||    
T  3464916 aaactctaatttcttctccttcatccaccaaagaggggtgatttagggtcaatttttgatccaaaatcacc 3464986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 157 - 227
Target Start/End: Complemental strand, 25237484 - 25237413
Alignment:
Q  157 aaaactttagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcacc 227  Q
    |||||| |||||| |||| ||||||| || ||||||||||||||||  ||||| ||||||||||||||||||    
T  25237484 aaaactctagtttattctccttcatctattaaagaggggtgatttagagtcaacttttgatccaaaatcacc 25237413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 158 - 215
Target Start/End: Complemental strand, 31263111 - 31263053
Alignment:
Q  158 aaactttagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttga 215  Q
    |||||||||||| |||||||||||| || |||||||||||||||| ||||||| |||||    
T  31263111 aaactttagttttttcttcttcatccatcaaagaggggtgatttagggtcaatctttga 31263053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 228
Target Start/End: Original strand, 37883639 - 37883681
Alignment:
Q  186 aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 228  Q
    |||||||||||||||| ||||||||||| ||||||||||||||    
T  37883639 aaagaggggtgatttagggtcaatttttaatccaaaatcaccc 37883681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 164 - 228
Target Start/End: Original strand, 10589001 - 10589066
Alignment:
Q  164 tagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 228  Q
    |||||||||| |||||||| |  ||| |||||||||||| ||||||||||||| ||||||||||||    
T  10589001 tagtttcttcatcttcatccaccaaaaaggggtgatttagggtcaatttttgacccaaaatcaccc 10589066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 185 - 226
Target Start/End: Complemental strand, 15674103 - 15674062
Alignment:
Q  185 taaagaggggtgatttaaggtcaatttttgatccaaaatcac 226  Q
    ||||||||||||||||| ||||||||||||| ||||||||||    
T  15674103 taaagaggggtgatttagggtcaatttttgacccaaaatcac 15674062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 164 - 228
Target Start/End: Original strand, 25516457 - 25516522
Alignment:
Q  164 tagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 228  Q
    ||||||||||| ||||||| |  |||||||||||||||| ||||||| ||||| ||||||||||||    
T  25516457 tagtttcttctccttcatccaccaaagaggggtgatttagggtcaatatttgacccaaaatcaccc 25516522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 164 - 228
Target Start/End: Original strand, 41176825 - 41176890
Alignment:
Q  164 tagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 228  Q
    ||||||||||| ||||||| |  |||||||||||||||| ||||||||||||| |||||| |||||    
T  41176825 tagtttcttctccttcatccaccaaagaggggtgatttagggtcaatttttgacccaaaaccaccc 41176890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 164 - 228
Target Start/End: Complemental strand, 44167860 - 44167795
Alignment:
Q  164 tagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 228  Q
    ||||||||||| ||||||| |  ||||||||||||| || ||||||||||||| ||||||||||||    
T  44167860 tagtttcttctccttcatccaccaaagaggggtgatatatggtcaatttttgacccaaaatcaccc 44167795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 189 - 228
Target Start/End: Complemental strand, 7640481 - 7640442
Alignment:
Q  189 gaggggtgatttaaggtcaatttttgatccaaaatcaccc 228  Q
    ||||||||||||| ||||||||||||| ||||||||||||    
T  7640481 gaggggtgatttagggtcaatttttgacccaaaatcaccc 7640442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 185 - 228
Target Start/End: Complemental strand, 16880088 - 16880045
Alignment:
Q  185 taaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 228  Q
    ||||||||||||||||  ||||||||||||| ||||||||||||    
T  16880088 taaagaggggtgatttttggtcaatttttgacccaaaatcaccc 16880045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 228
Target Start/End: Original strand, 26491289 - 26491331
Alignment:
Q  186 aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 228  Q
    |||||||||| ||||||| ||||||||||| ||||||||||||    
T  26491289 aaagaggggtaatttaagttcaatttttgacccaaaatcaccc 26491331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 229
Target Start/End: Original strand, 43566840 - 43566905
Alignment:
Q  164 tagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcaccct 229  Q
    ||||||||||| ||||||| |  |||||||||||||| | ||||||||||||| |||||||||||||    
T  43566840 tagtttcttctccttcatccaccaaagaggggtgatt-agggtcaatttttgacccaaaatcaccct 43566905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 228
Target Start/End: Original strand, 3602948 - 3603013
Alignment:
Q  164 tagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 228  Q
    ||||||||||| ||||||| || ||||| |||||||||| |||||| ||||||  |||||||||||    
T  3602948 tagtttcttctccttcatccatcaaagatgggtgatttatggtcaacttttgactcaaaatcaccc 3603013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 225
Target Start/End: Complemental strand, 9715667 - 9715634
Alignment:
Q  192 gggtgatttaaggtcaatttttgatccaaaatca 225  Q
    |||||||||| |||||||||||||||||||||||    
T  9715667 gggtgatttagggtcaatttttgatccaaaatca 9715634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 226
Target Start/End: Complemental strand, 17037778 - 17037737
Alignment:
Q  185 taaagaggggtgatttaaggtcaatttttgatccaaaatcac 226  Q
    ||||||||||||||||  ||||||||||||| ||||||||||    
T  17037778 taaagaggggtgatttttggtcaatttttgacccaaaatcac 17037737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 228
Target Start/End: Complemental strand, 25623196 - 25623131
Alignment:
Q  164 tagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 228  Q
    ||||||||| ||||||||  || ||||||||||||||||   ||||||||||| ||||||||||||    
T  25623196 tagtttctttttcttcatacatcaaagaggggtgatttattatcaatttttgacccaaaatcaccc 25623131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 228
Target Start/End: Complemental strand, 27191486 - 27191421
Alignment:
Q  164 tagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 228  Q
    ||||||||||| ||||||| |  |||||||| ||||||| ||||||||||||| || |||||||||    
T  27191486 tagtttcttctccttcatccaccaaagagggatgatttagggtcaatttttgaccctaaatcaccc 27191421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 228
Target Start/End: Complemental strand, 27841300 - 27841235
Alignment:
Q  164 tagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 228  Q
    ||||||||||| ||||||| |  |||||||| ||||||| ||||||||||||| || |||||||||    
T  27841300 tagtttcttctccttcatccaccaaagagggatgatttagggtcaatttttgaccctaaatcaccc 27841235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 227
Target Start/End: Complemental strand, 42105880 - 42105839
Alignment:
Q  186 aaagaggggtgatttaaggtcaatttttgatccaaaatcacc 227  Q
    ||||||||||| |||| ||||||||||||| |||||||||||    
T  42105880 aaagaggggtgctttagggtcaatttttgacccaaaatcacc 42105839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 164 - 228
Target Start/End: Original strand, 31874047 - 31874112
Alignment:
Q  164 tagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 228  Q
    ||||||||||| ||||||| || |||||| ||||||||| ||||||||||||| ||||||||||||    
T  31874047 tagtttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcaccc 31874112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 157 - 228
Target Start/End: Original strand, 9269977 - 9270049
Alignment:
Q  157 aaaactttagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 228  Q
    |||||| ||||||||||| ||||||| |  |||||||||||||||| | ||||||||||| ||||||||||||    
T  9269977 aaaactctagtttcttctccttcatccaccaaagaggggtgatttatgatcaatttttgacccaaaatcaccc 9270049  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 164 - 227
Target Start/End: Original strand, 13864322 - 13864386
Alignment:
Q  164 tagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcacc 227  Q
    ||||||||||| ||||||  || ||||||||||||||||||||||| |||||| |||||||||||    
T  13864322 tagtttcttctccttcatttatcaaagaggggtgatttaaggtcaacttttgagccaaaatcacc 13864386  T

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Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 150 - 225
Target Start/End: Complemental strand, 16937504 - 16937428
Alignment:
Q  150 cgtcagcaaaactttagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatca 225  Q
    ||||| ||||||  ||||||||||  ||||||| |  |||||||||||||||| |||||||||||||||||||||||    
T  16937504 cgtcatcaaaaccctagtttcttcaccttcatccaccaaagaggggtgatttagggtcaatttttgatccaaaatca 16937428  T

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Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 157 - 228
Target Start/End: Original strand, 23766698 - 23766770
Alignment:
Q  157 aaaactttagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 228  Q
    |||||| ||||||||||| ||||||| |  ||||||  |||||||||||||||||||||| ||||||||||||    
T  23766698 aaaactctagtttcttctacttcatccaccaaagagatgtgatttaaggtcaatttttgacccaaaatcaccc 23766770  T

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Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 228
Target Start/End: Original strand, 10042747 - 10042789
Alignment:
Q  186 aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 228  Q
    |||||||||||||||| ||||||||||||| ||||||||||||    
T  10042747 aaagaggggtgatttatggtcaatttttgacccaaaatcaccc 10042789  T

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Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 169 - 225
Target Start/End: Original strand, 44295284 - 44295341
Alignment:
Q  169 tcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatca 225  Q
    |||||| ||||||| || |||||||||||||||| ||||||||||||| |||||||||    
T  44295284 tcttctccttcatccatcaaagaggggtgatttagggtcaatttttgacccaaaatca 44295341  T

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Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 150 - 228
Target Start/End: Original strand, 15665488 - 15665567
Alignment:
Q  150 cgtcagcaaaactttagtttcttcttcttcatc-aataaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 228  Q
    ||||| ||||||| |||||||||   ||||||| || |||||||||||||||| |||||| ||||||  |||||||||||    
T  15665488 cgtcaccaaaactctagtttctttcccttcatccaacaaagaggggtgatttagggtcaacttttgacacaaaatcaccc 15665567  T

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Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 167 - 228
Target Start/End: Original strand, 9992631 - 9992693
Alignment:
Q  167 tttcttcttcttcat-caataaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 228  Q
    |||||||| |||||| || || || ||||||||||| ||||||||||||| ||||||||||||    
T  9992631 tttcttctccttcattcattagaggggggtgatttagggtcaatttttgacccaaaatcaccc 9992693  T

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Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 224
Target Start/End: Complemental strand, 27534527 - 27534489
Alignment:
Q  186 aaagaggggtgatttaaggtcaatttttgatccaaaatc 224  Q
    |||||||||||||||| |||||||||||||||| |||||    
T  27534527 aaagaggggtgatttagggtcaatttttgatcccaaatc 27534489  T

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Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 228
Target Start/End: Original strand, 37658952 - 37658994
Alignment:
Q  186 aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 228  Q
    |||||||||||||||| |||||||||||||  |||||||||||    
T  37658952 aaagaggggtgatttagggtcaatttttgacacaaaatcaccc 37658994  T

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Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 228
Target Start/End: Complemental strand, 36545932 - 36545867
Alignment:
Q  164 tagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 228  Q
    ||||||||||| ||||||| |  |||||||| ||||||||||||||||| ||| |||| |||||||    
T  36545932 tagtttcttctccttcatccaccaaagagggatgatttaaggtcaatttgtgacccaatatcaccc 36545867  T

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Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 212
Target Start/End: Complemental strand, 39067860 - 39067816
Alignment:
Q  168 ttcttcttcttcatcaataaagaggggtgatttaaggtcaatttt 212  Q
    |||||||||||| ||  | ||||||||||||||||||||||||||    
T  39067860 ttcttcttcttcttcttttaagaggggtgatttaaggtcaatttt 39067816  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 156 - 228
Target Start/End: Original strand, 32457601 - 32457674
Alignment:
Q  156 caaaactttagtttcttcttcttcatcaa-taaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 228  Q
    |||||| ||||||| |||| ||||||| | |||||||||||||||||  |||||||||||| ||||||||||||    
T  32457601 caaaaccttagttttttctccttcatctactaaagaggggtgatttagcgtcaatttttgacccaaaatcaccc 32457674  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 150 - 228
Target Start/End: Original strand, 16913277 - 16913356
Alignment:
Q  150 cgtcagcaaaactttagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 228  Q
    ||||| ||||||  ||||||||||| ||||||| |  |||||||||||||||| ||||||||||||| || |||||||||    
T  16913277 cgtcaccaaaaccctagtttcttctccttcatccaccaaagaggggtgatttagggtcaatttttgacccgaaatcaccc 16913356  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 189 - 228
Target Start/End: Original strand, 19759777 - 19759816
Alignment:
Q  189 gaggggtgatttaaggtcaatttttgatccaaaatcaccc 228  Q
    ||||||||||||| ||||||||||||| ||||||||||||    
T  19759777 gaggggtgatttagggtcaatttttgacccaaaatcaccc 19759816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 164 - 226
Target Start/End: Original strand, 33194568 - 33194631
Alignment:
Q  164 tagtttcttcttcttcatcaata-aagaggggtgatttaaggtcaatttttgatccaaaatcac 226  Q
    ||||||||||||||||||| ||  || |  ||||||||| ||||||||||||||||||||||||    
T  33194568 tagtttcttcttcttcatccattcaatattggtgatttagggtcaatttttgatccaaaatcac 33194631  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 228
Target Start/End: Complemental strand, 12576606 - 12576564
Alignment:
Q  186 aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 228  Q
    |||||||||||||||| ||||||||||||| || |||||||||    
T  12576606 aaagaggggtgatttagggtcaatttttgaccctaaatcaccc 12576564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 228
Target Start/End: Original strand, 32804281 - 32804322
Alignment:
Q  187 aagaggggtgatttaaggtcaatttttgatccaaaatcaccc 228  Q
    |||| |||||||||| ||||||||||||| ||||||||||||    
T  32804281 aagatgggtgatttagggtcaatttttgacccaaaatcaccc 32804322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 225
Target Start/End: Original strand, 34020582 - 34020643
Alignment:
Q  165 agtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatca 225  Q
    |||||||||||||||||| |  ||||||||||| |||| ||||||||||||| |||| ||||    
T  34020582 agtttcttcttcttcatctaccaaagaggggtggtttagggtcaatttttgacccaacatca 34020643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 228
Target Start/End: Complemental strand, 548991 - 548951
Alignment:
Q  188 agaggggtgatttaaggtcaatttttgatccaaaatcaccc 228  Q
    ||||| ||||| |||||||||||||||| ||||||||||||    
T  548991 agaggagtgatataaggtcaatttttgacccaaaatcaccc 548951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 150 - 228
Target Start/End: Original strand, 20844956 - 20845036
Alignment:
Q  150 cgtcagcaaaactttagtttcttcttcttcatcaat-aaagagggg-tgatttaaggtcaatttttgatccaaaatcaccc 228  Q
    ||||| |||||| |||||||||||| ||| ||| |  ||||||||| | ||| ||||||||||||||| ||||||||||||    
T  20844956 cgtcaccaaaaccttagtttcttctcctttatctaccaaagagggggtaattcaaggtcaatttttgacccaaaatcaccc 20845036  T

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Target: scaffold0045 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 164 - 226
Target Start/End: Complemental strand, 9799 - 9736
Alignment:
Q  164 tagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcac 226  Q
    ||||||||||| ||||||| |  |||||||| ||||||| ||||||||||||| ||||||||||    
T  9799 tagtttcttctccttcatccaccaaagagggatgatttagggtcaatttttgacccaaaatcac 9736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1294 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold1294
Description:

Target: scaffold1294; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 150 - 225
Target Start/End: Original strand, 729 - 805
Alignment:
Q  150 cgtcagcaaaactttagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatca 225  Q
    ||||| ||||||| ||||||||||| ||||||| |  ||| ||  |||||||||||||||||||||| | |||||||    
T  729 cgtcatcaaaactctagtttcttctccttcatccaccaaaaagatgtgatttaaggtcaatttttgaccaaaaatca 805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 150 - 213
Target Start/End: Original strand, 244583 - 244647
Alignment:
Q  150 cgtcagcaaaactttagtttcttcttcttcat-caataaagaggggtgatttaaggtcaattttt 213  Q
    ||||| |||||| | ||||||||||||||||| ||  |||||||| ||||||| |||||||||||    
T  244583 cgtcaccaaaacctaagtttcttcttcttcatccacaaaagagggttgatttagggtcaattttt 244647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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