View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1946_low_71 (Length: 355)
Name: NF1946_low_71
Description: NF1946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1946_low_71 |
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Alignment Details
Target: chr7 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 20 - 343
Target Start/End: Original strand, 28947017 - 28947342
Alignment:
| Q |
20 |
tctataagtttgacaaaatcacggtgacactgtgatttcacttgatatcacactgagtttgttagaatcacatgtagccggtcaccatgattttacaaaa |
119 |
Q |
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| T |
28947017 |
tctataagtttgacaaaatcacagtgacactgtgatttcacttgatatcacactgagtttgttagaatcacatgtagccggtcaccatgattttacaaaa |
28947116 |
T |
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| Q |
120 |
ctacagcttttgctaactattttataaaaacatgcactcaaaaacaaccctaaaatgcacttagcaagtcaaatacaagcaaaaaagaaagac--atata |
217 |
Q |
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| T |
28947117 |
ctacagctttagctaactattttaaaaaaacatgcactcacaaacaaccctaaaatgcacttagcaagtcaaatagaagcaaaaaagaaagacatatata |
28947216 |
T |
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| Q |
218 |
aaggatgaaatgaaacctgtgatcttgggaagagaacgccagcttccatgaccaccattcttcttaatatagttagcaagaatttcatcctcttcagcag |
317 |
Q |
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| T |
28947217 |
aaggatgaaatgaaacctgtgatcttgggaagagaacgccagcttccatgaccaccattcttcttaatatagttagcaagaatttcatcctcttcagcag |
28947316 |
T |
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| Q |
318 |
tccaaggtcctttcttcaaacccttc |
343 |
Q |
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| T |
28947317 |
tccaaggtcctttcttcaaacccttc |
28947342 |
T |
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Back To:
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Target: chr8 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 245 - 336
Target Start/End: Complemental strand, 11745509 - 11745418
Alignment:
| Q |
245 |
ggaagagaacgccagcttccatgaccaccattcttcttaatatagttagcaagaatttcatcctcttcagcagtccaaggtcctttcttcaa |
336 |
Q |
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| T |
11745509 |
ggaagagaacgccagcttccatgaccaccatttttcttgataaaattaacaagaacttcatcttcttcactagtccaaggacctttcttcaa |
11745418 |
T |
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