View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1946_low_73 (Length: 346)
Name: NF1946_low_73
Description: NF1946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1946_low_73 |
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Alignment Details
Target: chr4 (Bit Score: 146; Significance: 7e-77; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 175 - 328
Target Start/End: Complemental strand, 8736020 - 8735867
Alignment:
| Q |
175 |
ataagtgactcgtttatcattttcaaatgattttgatttattgatagaaattttacatatgtataatgaaagaaaggaccatcttttattatttttcaaa |
274 |
Q |
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| T |
8736020 |
ataagtgactcgtttatcattttcaaatgattttgatttattgatagaaaatttacatatgtataatgaaagaaaggaccatcttttatgatttttcaaa |
8735921 |
T |
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| Q |
275 |
agaaataaaaatgtccattagttgtgaaattagttagacatttatgtgtacact |
328 |
Q |
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| T |
8735920 |
agaaataaaaatgtccattagttgtgaaattagttagacatttatgtgtacact |
8735867 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 8736262 - 8736117
Alignment:
| Q |
1 |
tggatggattggaggaaaaagggtatgttcaagcaaaccaagttttggatagaaacttgacaagtttgctaggccaaacacttgttttgtattcaaataa |
100 |
Q |
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| T |
8736262 |
tggatggattggaggaaaaagggtatgttcaagcaaaccaagttttggatagaaacttgacaagtttgctaggccaaacacttgttttgtattcaaataa |
8736163 |
T |
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| Q |
101 |
caaaatcaaagtcaaaggtaattaataagttattgtaacttatagt |
146 |
Q |
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| T |
8736162 |
caaaattaaagtcaaaggtaattaataagttattataacttatagt |
8736117 |
T |
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