View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1946_low_74 (Length: 345)
Name: NF1946_low_74
Description: NF1946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1946_low_74 |
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Alignment Details
Target: chr3 (Bit Score: 311; Significance: 1e-175; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 17 - 339
Target Start/End: Complemental strand, 42224423 - 42224101
Alignment:
| Q |
17 |
tcctcaatgtcattcaattagctatgaacgatctcaatggtacacttccaccacaattgggtcaactccataatctacagactttagacttttctgtcaa |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
42224423 |
tcctcaatgtcattcaattagctatgaacgatctcaatggcacacttccaccacaattgggtcaactccataatctacagagtttagacttttctgtcaa |
42224324 |
T |
|
| Q |
117 |
taatctcacaggtcaaattccttcaacctttggcaatctcttatctctcaagaatctttccatggcaaggaacatgcttgagggtgaaattccaagtgaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42224323 |
taatctcacaggtcaaattccttcaacctttggcaatctcttatctctcaagaatctttccatggcaaggaacatgcttgagggtgaaattccaagtgaa |
42224224 |
T |
|
| Q |
217 |
ttgggcaatctccacaatctttcaagacttcaactctcagagaataacttcaccggcaagcttcctacttctatcttcaacttatcttccttagttttct |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42224223 |
ttgggcaatctccacaatctttcaagacttcaactctcagagaataacttcaccggcaagcttcctacttctatcttcaacttatcttccttagttttct |
42224124 |
T |
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| Q |
317 |
tatccctcacacagaataatcta |
339 |
Q |
| |
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|||||||||||||||| |||||| |
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| T |
42224123 |
tatccctcacacagaacaatcta |
42224101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 17 - 339
Target Start/End: Complemental strand, 42212207 - 42211885
Alignment:
| Q |
17 |
tcctcaatgtcattcaattagctatgaacgatctcaatggtacacttccaccacaattgggtcaactccataatctacagactttagacttttctgtcaa |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |
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| T |
42212207 |
tcctcaatgtcattcaattagctatgaacgatctcaatggcacacttccaccacaattgggtcaactccataatctacaaagtttagacttttctgtcaa |
42212108 |
T |
|
| Q |
117 |
taatctcacaggtcaaattccttcaacctttggcaatctcttatctctcaagaatctttccatggcaaggaacatgcttgagggtgaaattccaagtgaa |
216 |
Q |
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||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42212107 |
taatctcactggtaaaattccttcaacctttggcaatctcttatctctcaagaatctttccatggcaaggaacatgcttgagggtgaaattccaagtgaa |
42212008 |
T |
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| Q |
217 |
ttgggcaatctccacaatctttcaagacttcaactctcagagaataacttcaccggcaagcttcctacttctatcttcaacttatcttccttagttttct |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42212007 |
ttgggcaatctccacaatctttcaagacttcaactctcagagaataacttcaccggcaagcttcctacttctatcttcaacttatcttccttagttttct |
42211908 |
T |
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| Q |
317 |
tatccctcacacagaataatcta |
339 |
Q |
| |
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|||||||||||||||| |||||| |
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| T |
42211907 |
tatccctcacacagaacaatcta |
42211885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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