View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1946_low_77 (Length: 340)
Name: NF1946_low_77
Description: NF1946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1946_low_77 |
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Alignment Details
Target: chr4 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 1 - 327
Target Start/End: Complemental strand, 2434433 - 2434107
Alignment:
| Q |
1 |
atgaatctaaagttacactttttattgcttttatttaaaatggaaggagtatactctttattcaagtaaagtcctccacaaacatgtgcaaaatgtgcaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2434433 |
atgaatctaaagttacactttttattgcttttatttaaaatggaaggagtatactctttattcaagtaaagtcctccacaaacatgtgcaaaatgtgcaa |
2434334 |
T |
|
| Q |
101 |
atgtgtaatgttaacccaacctgtaataaattcattgcacatagcatggtagcttttaggaaccatacacgttacattagagaggttgttctatacccct |
200 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2434333 |
atgtgtaatgttaacccaacctgtaataaattcgttgcacatagcatggtagcttttaggaaccatacacgttacattagagaggttgttctatacccct |
2434234 |
T |
|
| Q |
201 |
ctagctaaaataacgataccacaaggcagtgtaatactaatttgtactttggtgagtccatagttacgtcaaatgagctgttagattttctattaccatg |
300 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2434233 |
ctagctaaaataacgataccacaaggcaatgtaatactaatttgtactttggtgagtccatagttacgtcaaatgagctgttagattttctattaccatg |
2434134 |
T |
|
| Q |
301 |
aaaaacaatcacacaatgctttcaact |
327 |
Q |
| |
|
||||||||||||||||||||||||||| |
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| T |
2434133 |
aaaaacaatcacacaatgctttcaact |
2434107 |
T |
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