View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1946_low_78 (Length: 338)
Name: NF1946_low_78
Description: NF1946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1946_low_78 |
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Alignment Details
Target: chr3 (Bit Score: 170; Significance: 3e-91; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 110 - 299
Target Start/End: Complemental strand, 6073475 - 6073286
Alignment:
| Q |
110 |
cggttggtcgtagaaaatgtttcagagatgatgattgtgcaaaaaatatgtgtccatcttatttggtcgtgaaatgtgtcagcggtatttgtaaatgtgt |
209 |
Q |
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| T |
6073475 |
cggttggtcgtagaaaatgtttcagagatgatgattgtgcaaaaaatatgtgtccgtcttatttggtcgtgaagtgtgtcaacggtatttataaatgtgt |
6073376 |
T |
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| Q |
210 |
tagaccgtagttcaaataaaaacctaatcccaattgattttgtatgttgtgcaagaaccaagagagtacacaaaagtcctttaagaatat |
299 |
Q |
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| T |
6073375 |
tagaccgtagttcaaataaaaacctaatcccaagtgattttgtatgttgtgcaagaaccaagagagtacacaaaagtcctttaagaatat |
6073286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 107 - 284
Target Start/End: Complemental strand, 6080531 - 6080354
Alignment:
| Q |
107 |
aagcggttggtcgtagaaaatgtttcagagatgatgattgtgcaaaaaatatgtgtccatcttatttggtcgtgaaatgtgtcagcggtatttgtaaatg |
206 |
Q |
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| T |
6080531 |
aagcgggtggtaatagaagatgttttagagattctgattgtccaaaaaatatgtgtccatcctatttggtcgtgaagtgtctcagaagtaattgtaagtg |
6080432 |
T |
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| Q |
207 |
tgttagaccgtagttcaaataaaaacctaatcccaattgattttgtatgttgtgcaagaaccaagagagtacacaaaa |
284 |
Q |
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| T |
6080431 |
tgttagaccagggttgcaagtaagacttaatcccaattgattttgtatttagtgaaagagtcaagagagtgcacaaaa |
6080354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 106 - 286
Target Start/End: Original strand, 6068806 - 6068986
Alignment:
| Q |
106 |
gaagcggttggtcgtagaaaatgtttcagagatgatgattgtgcaaaaaatatgtgtccatcttatttggtcgtgaaatgtgtcagcggtatttgtaaat |
205 |
Q |
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| T |
6068806 |
gaagcgggtggtaatagaaaatgttttagagattctgattgtccaaaatttatgtgcccatcttatttggccgtgaagtgtatcggaagactttgtaggt |
6068905 |
T |
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| Q |
206 |
gtgttagaccgtagttcaaataaaaacctaatcccaattgattttgtatgttgtgcaagaaccaagagagtacacaaaagt |
286 |
Q |
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| T |
6068906 |
gtggtagaccggagttgcaagtagaacttaatcccaaatgattttgtatttagtgaaagaaccaagagagtaaacaaaagt |
6068986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 234 - 302
Target Start/End: Original strand, 6113281 - 6113348
Alignment:
| Q |
234 |
taatcccaattgattttgtatgttgtgcaagaaccaagagagtacacaaaagtcctttaagaatattac |
302 |
Q |
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| T |
6113281 |
taatcccaagtgattttgtatttagtgaaagaaccaagagaatacacaaaagt-cttttagaatattac |
6113348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 234 - 304
Target Start/End: Original strand, 6120173 - 6120242
Alignment:
| Q |
234 |
taatcccaattgattttgtatgttgtgcaagaaccaagagagtacacaaaagtcctttaagaatattacat |
304 |
Q |
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| T |
6120173 |
taatcccaagtgattttgtatttactgaaagaaccaggagagtacacaaaagt-cttttagaatattacat |
6120242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 304
Target Start/End: Complemental strand, 6091475 - 6091406
Alignment:
| Q |
234 |
taatcccaattgattttgtatgttgtgcaagaaccaagagagtacacaaaagtcctttaagaatattacat |
304 |
Q |
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| T |
6091475 |
taatccctagtgattttgtatttagtgaaagaaccaagacaggacacaaaagt-cttttagaatattacat |
6091406 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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