View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1946_low_79 (Length: 336)
Name: NF1946_low_79
Description: NF1946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1946_low_79 |
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Alignment Details
Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 87 - 326
Target Start/End: Complemental strand, 37827337 - 37827098
Alignment:
| Q |
87 |
gtcgatgaggaataaacacaaatcagcataaacaggtaatttnnnnnnntttaacaaaagtggtatttaaaaatcaattggacggaaatacagtattgaa |
186 |
Q |
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| T |
37827337 |
gtcgatgaggaataaacacaaatcagcataaacaggtgctttaaaaaagattaacaaaagtggtatttaaaaatcaattggacggaaatacagtattgaa |
37827238 |
T |
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| Q |
187 |
cccaccaatgtagggttcgaaaccaaataccaaaagaaattggtgtgtaaaatttcgcaagcatcttatcgaactagagacgagttggattataaacaaa |
286 |
Q |
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| T |
37827237 |
cccaccaatgtagggttcgaaaccaaataacaaaagaaattggtgtgtaaaaatccgcaagcatcttatcgaactagagacgagttggattataaacaaa |
37827138 |
T |
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| Q |
287 |
ttcatcttttgaggaatggcgaatgaatcagctgcctatg |
326 |
Q |
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| T |
37827137 |
ttcatcttttgaggaatggcgaatgaatcagctgcctatg |
37827098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 315
Target Start/End: Complemental strand, 14517836 - 14517721
Alignment:
| Q |
199 |
gggttcgaaaccaaataccaaaagaaattggtgtgtaaaatttcgcaagcatcttatcgaactagagacgagttggattataaacaaattcatcttttga |
298 |
Q |
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| T |
14517836 |
gggttcaaaaccaaatagcaaaagaaattgatgtgaaaaatct-gcaagcatcatatctaactagagaggagcctgaataaaagcaaattcaaattttga |
14517738 |
T |
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| Q |
299 |
ggaatggcgaatgaatc |
315 |
Q |
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| T |
14517737 |
gaaacggtgaatgaatc |
14517721 |
T |
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