View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1946_low_8 (Length: 653)
Name: NF1946_low_8
Description: NF1946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1946_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 216; Significance: 1e-118; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 294 - 533
Target Start/End: Complemental strand, 8431362 - 8431123
Alignment:
| Q |
294 |
aagttgcatgcatatttaccttaatcgatgtatgatgtcaatctctgctcacgatgcgttttgaagaaaaaagtccaatgctccctctggcattgatgaa |
393 |
Q |
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| T |
8431362 |
aagttgcatgcatatttaccttaatcgatgtatgatgtcaatctctgctcacgatgcattttgtagaaaaaagtccaatgctccctctggcattgatgaa |
8431263 |
T |
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| Q |
394 |
ggtttgtgtgttttaattctccgtgacatcaagttacgcaaggaagggaagtcaatattccataaatcaggaactaagtagagagagtctaagcaataag |
493 |
Q |
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| T |
8431262 |
ggtttgtgtgttttaattctccgtgacgtcaagttacgcaaggaagggaaatcaatattccataaatcaggaactaggtagagagagtctaagcaataag |
8431163 |
T |
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| Q |
494 |
aatggattagaatcaatttatcgcaagtcattacttttga |
533 |
Q |
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| T |
8431162 |
aatggattagaatcaatttatcgcaagtcataacttttga |
8431123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 157; E-Value: 4e-83
Query Start/End: Original strand, 16 - 205
Target Start/End: Complemental strand, 8432163 - 8431974
Alignment:
| Q |
16 |
atgcagcaaatatgatctatgatgtaggaaaatcaatactatatcattggcagnnnnnnncttcttcaattacttaaataaggaaaaatactcgaatgta |
115 |
Q |
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| T |
8432163 |
atgcagcaaatatgatctatgatgtaggaaaatcaatactatatcattggtagtttttttcttcttcaattacttaaataaggaaaaatactcgaatgta |
8432064 |
T |
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| Q |
116 |
aattaaattaagcttgcctagctaaatattacatgacttgatctatgttgcattaacttgtaaacacagctactttctaacatggaaatt |
205 |
Q |
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| T |
8432063 |
aattaaattaagcttgcctagctaaatattacatgaattgatatatgttgcattaacttgtaaacacagctactttctaacatggaaatt |
8431974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 77 - 146
Target Start/End: Complemental strand, 8437663 - 8437594
Alignment:
| Q |
77 |
ttcttcaattacttaaataaggaaaaatactcgaatgtaaattaaattaagcttgcctagctaaatatta |
146 |
Q |
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| T |
8437663 |
ttcttcaattacttaaacaaggaaaaatacttgaatgttaattaaactaagcttgcctagccaaatatta |
8437594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 77 - 146
Target Start/End: Complemental strand, 8440888 - 8440819
Alignment:
| Q |
77 |
ttcttcaattacttaaataaggaaaaatactcgaatgtaaattaaattaagcttgcctagctaaatatta |
146 |
Q |
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| T |
8440888 |
ttcttcaattacttaaacaaggaaaaatacttgaatgttaattaaactaagcttgcctagccaaatatta |
8440819 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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