View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1946_low_80 (Length: 329)
Name: NF1946_low_80
Description: NF1946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1946_low_80 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 1 - 329
Target Start/End: Complemental strand, 38025513 - 38025185
Alignment:
| Q |
1 |
ttttcaatgccatggagaataattaagatctagttttggggatttagggttttgtttgagtcaataactttgatttagggttttgagaaagcaatgcagt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38025513 |
ttttcaatgccatggagaataattaagatctagttttggggatttagggttttgtttgagtcaataactttgatttagggttttgagaaagcaatgcagt |
38025414 |
T |
|
| Q |
101 |
actctaattttgattgataaagttaatatcnnnnnnnaactttcaagatctttgtttagtagtactaatacattgtttaattcaatttgagaggacaaag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
38025413 |
actctaattttgattgataaagttaatatctttttttaactttcaagatctttgtttagtagtactaatgcattgtttaattcaatttgagaggacaaag |
38025314 |
T |
|
| Q |
201 |
acaaatcatgtcagcaccaaaaacccattttaataacaataaacactatgcttagtgctgtaatatactacaatatagatatggtttccaatgcaaacct |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38025313 |
acaaatcatgtcagcaccaaaaacccattttaataacaataaacactatgcttagtgctgtaatatactacaatatagatatggtttccaatgcaaacct |
38025214 |
T |
|
| Q |
301 |
agcacaaacactttaatcacttctgtgct |
329 |
Q |
| |
|
|||||||||||||||||||||| |||||| |
|
|
| T |
38025213 |
agcacaaacactttaatcacttttgtgct |
38025185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University