View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1946_low_86 (Length: 319)
Name: NF1946_low_86
Description: NF1946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1946_low_86 |
 | |
|
| [»] chr7 (4 HSPs) |
| |
|
| [»] chr3 (4 HSPs) |
| |
|
| [»] chr4 (2 HSPs) |
| |
|
| [»] chr2 (3 HSPs) |
| |
|
| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 122; Significance: 1e-62; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 177 - 318
Target Start/End: Original strand, 38833053 - 38833194
Alignment:
| Q |
177 |
ttacatcttaatcaagcgcggaaaagtaaccctcgcttgatcagcagctaacaaatggttaatttgaatcagacacgactcataaaacatcatctcattc |
276 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |
|
|
| T |
38833053 |
ttacatcttaatcaagcgcggaaaagtaacccccgcttgatcagcagctaacaaatggttaatttgagtcggacacgactcataaaacatcatctcattc |
38833152 |
T |
|
| Q |
277 |
cccatgatacatccaatattagctaacgcatcaactcaccta |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | |||||| |
|
|
| T |
38833153 |
cccatgatacatccaatattagctaacgcatcagcgcaccta |
38833194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 181 - 319
Target Start/End: Original strand, 29752248 - 29752385
Alignment:
| Q |
181 |
atcttaatcaagcgcggaaaagtaaccctcgcttgatcagcagctaacaaatggttaatttgaatcagacacgactcataaaacatcatctcattcccca |
280 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |
|
|
| T |
29752248 |
atcttaatcaagcgcggaaaagtaacccccgcttgatcagcagctaacaaatggttaatttgagtcggacacgactcataaaacatcatctcattcccca |
29752347 |
T |
|
| Q |
281 |
tgatacatccaatattagctaacgcatcaactcacctat |
319 |
Q |
| |
|
||||||| ||||||||||||||||||||| | ||||||| |
|
|
| T |
29752348 |
tgataca-ccaatattagctaacgcatcagcgcacctat |
29752385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 177 - 319
Target Start/End: Complemental strand, 18185740 - 18185604
Alignment:
| Q |
177 |
ttacatcttaatcaagcgcggaaaagtaaccctcgcttgatcagcagctaacaaatggttaatttgaatcagacacgactcataaaacatcatctcattc |
276 |
Q |
| |
|
|||||||||||| |||| ||||||| |||||| || |||||| ||||||||||||||||||||||| || ||||||||||| |||||||||||| |
|
|
| T |
18185740 |
ttacatcttaataaagcacggaaaaataacccccgtctgatcaacagctaacaaatggttaatttgagtc------gactcataaaatatcatctcattc |
18185647 |
T |
|
| Q |
277 |
cccatgatacatccaatattagctaacgcatcaactcacctat |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | ||||||| |
|
|
| T |
18185646 |
cccatgatacatccaatattagctaacgcatcagcgcacctat |
18185604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 119; Significance: 9e-61; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 177 - 319
Target Start/End: Original strand, 28574763 - 28574905
Alignment:
| Q |
177 |
ttacatcttaatcaagcgcggaaaagtaaccctcgcttgatcagcagctaacaaatggttaatttgaatcagacacgactcataaaacatcatctcattc |
276 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |
|
|
| T |
28574763 |
ttacatcttaatcaagcgcggaaaagtaacccccgcttgatcagcagctaacaaatggttaatttgagtcggacacgactcataaaacatcatctcattc |
28574862 |
T |
|
| Q |
277 |
cccatgatacatccaatattagctaacgcatcaactcacctat |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | ||||||| |
|
|
| T |
28574863 |
tccatgatacatccaatattagctaacgcatcagcgcacctat |
28574905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 177 - 319
Target Start/End: Complemental strand, 32971843 - 32971701
Alignment:
| Q |
177 |
ttacatcttaatcaagcgcggaaaagtaaccctcgcttgatcagcagctaacaaatggttaatttgaatcagacacgactcataaaacatcatctcattc |
276 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |||||||||| || |||||||||||||||||||||||||||| |
|
|
| T |
32971843 |
ttacatcttaatcaagcgcggaaaagtaacccccgcttgatcagcagttaacaaatagttaatttgagtcggacacgactcataaaacatcatctcattt |
32971744 |
T |
|
| Q |
277 |
cccatgatacatccaatattagctaacgcatcaactcacctat |
319 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| | ||||||| |
|
|
| T |
32971743 |
cccatgatacatccaatattagctaacgtatcagcgcacctat |
32971701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 177 - 287
Target Start/End: Complemental strand, 5472225 - 5472114
Alignment:
| Q |
177 |
ttacatcttaatcaagcgcggaaaagtaaccctc-gcttgatcagcagctaacaaatggttaatttgaatcagacacgactcataaaacatcatctcatt |
275 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| ||||||||| || |||||||||||||||||||| | | |||||||||||| ||||||||||||| |
|
|
| T |
5472225 |
ttacatcttaatcaagcgcggaaaagtaaatctccgcttgatcaacaactaacaaatggttaatttgagttgggcacgactcataatacatcatctcatt |
5472126 |
T |
|
| Q |
276 |
ccccatgataca |
287 |
Q |
| |
|
|||||||||||| |
|
|
| T |
5472125 |
ccccatgataca |
5472114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 265
Target Start/End: Original strand, 38658057 - 38658145
Alignment:
| Q |
177 |
ttacatcttaatcaagcgcggaaaagtaaccctcgcttgatcagcagctaacaaatggttaatttgaatcagacacgactcataaaaca |
265 |
Q |
| |
|
||||||||||||||| |||||||||| || || | |||||||||| ||||||||| |||||||| || |||| |||| ||||||| |
|
|
| T |
38658057 |
ttacatcttaatcaaacgcggaaaagaaatccatgtttgatcagcaattaacaaatgactaatttgagtcggacaaaactcgtaaaaca |
38658145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 119; Significance: 9e-61; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 177 - 319
Target Start/End: Original strand, 11691913 - 11692055
Alignment:
| Q |
177 |
ttacatcttaatcaagcgcggaaaagtaaccctcgcttgatcagcagctaacaaatggttaatttgaatcagacacgactcataaaacatcatctcattc |
276 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |
|
|
| T |
11691913 |
ttacgtcttaatcaagcgcggaaaagtaacccccgcttgatcagcagctaacaaatggttaatttgagtcggacacgactcataaaacatcatctcattc |
11692012 |
T |
|
| Q |
277 |
cccatgatacatccaatattagctaacgcatcaactcacctat |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | ||||||| |
|
|
| T |
11692013 |
cccatgatacatccaatattagctaacgcatcagcgcacctat |
11692055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 177 - 319
Target Start/End: Original strand, 20632955 - 20633097
Alignment:
| Q |
177 |
ttacatcttaatcaagcgcggaaaagtaaccctcgcttgatcagcagctaacaaatggttaatttgaatcagacacgactcataaaacatcatctcattc |
276 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || | ||||||||||||||||||||||||||| |
|
|
| T |
20632955 |
ttacatcttaatcaagcgcggaaaagtaacccccgcttgatcagcagctaacaaatggttaatttgagtcggtcacgactcataaaacatcatctcattc |
20633054 |
T |
|
| Q |
277 |
cccatgatacatccaatattagctaacgcatcaactcacctat |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | ||||||| |
|
|
| T |
20633055 |
cccatgatacatccaatattagctaacgcatcagcgcacctat |
20633097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 177 - 319
Target Start/End: Original strand, 48822986 - 48823128
Alignment:
| Q |
177 |
ttacatcttaatcaagcgcggaaaagtaaccctcgcttgatcagcagctaacaaatggttaatttgaatcagacacgactcataaaacatcatctcattc |
276 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |
|
|
| T |
48822986 |
ttacatcttaatcaagtgcggaaaagtaacccccgcttgatcagcagctaacaaatggttaatttgagtcggacacgactcataaaacatcatctcattc |
48823085 |
T |
|
| Q |
277 |
cccatgatacatccaatattagctaacgcatcaactcacctat |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | ||||||| |
|
|
| T |
48823086 |
cccatgatacatccaatattagctaacgcatcagcgcacctat |
48823128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 190 - 319
Target Start/End: Original strand, 10448894 - 10449023
Alignment:
| Q |
190 |
aagcgcggaaaagtaaccctcgcttgatcagcagctaacaaatggttaatttgaatcagacacgactcataaaacatcatctcattccccatgatacatc |
289 |
Q |
| |
|
|||| |||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10448894 |
aagcccggaaaagtaacccccgcttgatcagcagctaacaaatggttaatttgagtcagacacgactcataaaacatcatctcattccccatgatacatc |
10448993 |
T |
|
| Q |
290 |
caatattagctaacgcatcaactcacctat |
319 |
Q |
| |
|
|||||||||||||||||||| | ||||||| |
|
|
| T |
10448994 |
caatattagctaacgcatcagcgcacctat |
10449023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 181 - 319
Target Start/End: Original strand, 24323414 - 24323552
Alignment:
| Q |
181 |
atcttaatcaagcgcggaaaagtaaccctcgcttgatcagcagctaacaaatggttaatttgaatcagacacgactcataaaacatcatctcattcccca |
280 |
Q |
| |
|
||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |
|
|
| T |
24323414 |
atcttaatcaagcgccgaaaagtaacccccgcttgatcagcagctaacaaatggttaatttgagtcggacacgactcataaaacatcatctcattcccca |
24323513 |
T |
|
| Q |
281 |
tgatacatccaatattagctaacgcatcaactcacctat |
319 |
Q |
| |
|
||||||||||||||||||||||||||||| | ||||||| |
|
|
| T |
24323514 |
tgatacatccaatattagctaacgcatcagcacacctat |
24323552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 181 - 319
Target Start/End: Original strand, 36123725 - 36123865
Alignment:
| Q |
181 |
atcttaatcaagcgcggaaaagtaaccctcgcttgatcagcagctaacaaatggttaatttgaatcagacacgactcataaaacatcatctcattcccc- |
279 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| || |||||||||||||||||||||||||||||||| |
|
|
| T |
36123725 |
atcttaatcaaatgcggaaaagtaaccctcgcttgatcagcagctaacacatggttaatttgagtcggacacgactcataaaacatcatctcattcccca |
36123824 |
T |
|
| Q |
280 |
-atgatacatccaatattagctaacgcatcaactcacctat |
319 |
Q |
| |
|
|||||||||||||||||||||| ||||||| | ||||||| |
|
|
| T |
36123825 |
tatgatacatccaatattagctagcgcatcagcgcacctat |
36123865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 115; Significance: 2e-58; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 177 - 319
Target Start/End: Complemental strand, 16237681 - 16237539
Alignment:
| Q |
177 |
ttacatcttaatcaagcgcggaaaagtaaccctcgcttgatcagcagctaacaaatggttaatttgaatcagacacgactcataaaacatcatctcattc |
276 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||||| |
|
|
| T |
16237681 |
ttacatcttaatcaagcgcggaaaagtaacccccgcttgatcagcagctaacaaatggttaatttgagtcggacacgactcataaaacatcatcccattc |
16237582 |
T |
|
| Q |
277 |
cccatgatacatccaatattagctaacgcatcaactcacctat |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | ||||||| |
|
|
| T |
16237581 |
tccatgatacatccaatattagctaacgcatcagcgcacctat |
16237539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 177 - 309
Target Start/End: Complemental strand, 32407841 - 32407709
Alignment:
| Q |
177 |
ttacatcttaatcaagcgcggaaaagtaaccctcgcttgatcagcagctaacaaatggttaatttgaatcagacacgactcataaaacatcatctcattc |
276 |
Q |
| |
|
||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| || ||||| ||| ||||||||||||||||||| |
|
|
| T |
32407841 |
ttacatcttaatcaaacgcggaaaagtaacccccgcttgatcagcagctaacaaatggttaatttgagtcggacacaacttataaaacatcatctcattc |
32407742 |
T |
|
| Q |
277 |
cccatgatacatccaatattagctaacgcatca |
309 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
32407741 |
cccatgatacatccaatattagctaacgcatca |
32407709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 274
Target Start/End: Complemental strand, 11169024 - 11168963
Alignment:
| Q |
213 |
ttgatcagcagctaacaaatggttaatttgaatcagacacgactcataaaacatcatctcat |
274 |
Q |
| |
|
|||||||||||| |||||||| ||||||| || |||| || ||||||||||||||||||| |
|
|
| T |
11169024 |
ttgatcagcagcaaacaaatgactaatttgtgtcggacaagattcataaaacatcatctcat |
11168963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 177 - 319
Target Start/End: Complemental strand, 39181012 - 39180870
Alignment:
| Q |
177 |
ttacatcttaatcaagcgcggaaaagtaaccctcgcttgatcagcagctaacaaatggttaatttgaatcagacacgactcataaaacatcatctcattc |
276 |
Q |
| |
|
|||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| || |||| |||||||||||||||||||||||| |
|
|
| T |
39181012 |
ttacatcttaatcaagtgcggaaaagtaactctcgcttgatcagcagctaacaaatggttaatttgagtcggacatgactcataaaacatcatctcattc |
39180913 |
T |
|
| Q |
277 |
cccatgatacatccaatattagctaacgcatcaactcacctat |
319 |
Q |
| |
|
| ||||||||||| ||||||||||||||||||| | ||||||| |
|
|
| T |
39180912 |
ctcatgatacatctaatattagctaacgcatcagcgcacctat |
39180870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 66; Significance: 4e-29; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 185 - 309
Target Start/End: Complemental strand, 18569109 - 18568984
Alignment:
| Q |
185 |
taatcaagcgcggaaaagtaaccctcgcttgatcagcagctaacaaatggttaatttgaatcagacacgactcataaaacatcatctca-ttccccatga |
283 |
Q |
| |
|
|||||||||| |||||||||||| | ||||||| | || ||||||||||| |||||| | ||||||||||||||||| |||| |||||| |||||||||| |
|
|
| T |
18569109 |
taatcaagcgtggaaaagtaacctttgcttgataaacatctaacaaatggctaatttaagtcagacacgactcataatacataatctcatttccccatga |
18569010 |
T |
|
| Q |
284 |
tacatccaatattagctaacgcatca |
309 |
Q |
| |
|
|||||||||||||||||| |||||| |
|
|
| T |
18569009 |
aacatccaatattagctaatgcatca |
18568984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 224 - 311
Target Start/End: Original strand, 2091048 - 2091135
Alignment:
| Q |
224 |
ctaacaaatggttaatttgaatcagacacgactcataaaacatcatctcattccccatgatacatccaatattagctaacgcatcaac |
311 |
Q |
| |
|
|||||||||| ||||||||| || |||| |||||||||||||||||||||| |||||| |||| |||||||||||||| |||||||| |
|
|
| T |
2091048 |
ctaacaaatgattaatttgagtcggacaagactcataaaacatcatctcataccccattctacacccaatattagctaaagcatcaac |
2091135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 8e-18; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 177 - 311
Target Start/End: Complemental strand, 5699777 - 5699643
Alignment:
| Q |
177 |
ttacatcttaatcaagcgcggaaaagtaaccctcgcttgatcagcagctaacaaatggttaatttgaatcagacacgactcataaaacatcatctcattc |
276 |
Q |
| |
|
||||||||||||||| | | ||||| ||||| ||||||||||||||||||||||| |||||||| || |||| ||||||||||| | ||| |||| |
|
|
| T |
5699777 |
ttacatcttaatcaaacacataaaagaaacccctgcttgatcagcagctaacaaatgactaatttgagtcggacaagactcataaaataccatttcatga |
5699678 |
T |
|
| Q |
277 |
cccatgatacatccaatattagctaacgcatcaac |
311 |
Q |
| |
|
||||| |||| || ||||||||||| |||||||| |
|
|
| T |
5699677 |
cccattctacaccccatattagctaaagcatcaac |
5699643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 298
Target Start/End: Complemental strand, 14138002 - 14137902
Alignment:
| Q |
197 |
gaaaagtaaccctcgcttgatcagcagctaacaaatggttaatttgaatcagacacgactcataaaacatcatctcattccccatgatacatccaatatt |
296 |
Q |
| |
|
|||||||||||| ||||| |||| || |||||||||| | |||| | || ||| |||||||||||| ||||||||||| ||||||| | |||||||| |
|
|
| T |
14138002 |
gaaaagtaacccccgcttaatcatcaactaacaaatgacttatttaagtcgaacatgactcataaaacgtcatctcattcttcatgata-acccaatatt |
14137904 |
T |
|
| Q |
297 |
ag |
298 |
Q |
| |
|
|| |
|
|
| T |
14137903 |
ag |
14137902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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