View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1946_low_9 (Length: 584)
Name: NF1946_low_9
Description: NF1946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1946_low_9 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 502; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 502; E-Value: 0
Query Start/End: Original strand, 17 - 567
Target Start/End: Original strand, 52600326 - 52600894
Alignment:
| Q |
17 |
actaatcaacagtcaggtagttgaagtatatttgacattatacatataccatagcattgtaaat------------------ttctatatgtataacagg |
98 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
52600326 |
actaatcaacagtcaggtagttgaagtatatttgacattatacatataccatagcattgtaaatatcaatctgtgttgaagtttctatatgtataacagg |
52600425 |
T |
|
| Q |
99 |
attcatggagttcattagtgggaatcttaggacaattagctactttgatttccagacattgagaaaagccaccaagaatttccaccgcagatatcttctt |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52600426 |
attcatggagttcattagtgggaatcttaggacaattagctactttgatttccagacattgagaaaagccaccaagaatttccaccgcagatatcttctt |
52600525 |
T |
|
| Q |
199 |
ggaagtggtggatttggccctgtctatcaggtataatataggtactaaatctaatgatacttactttgatacacaattttgacctgacaatgataacctg |
298 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
52600526 |
ggaagtggtggatttggccctgtctatcaggtataatataggtactaaatctaatgatacttactttgatacacaattttgacctgacaatgagaacctg |
52600625 |
T |
|
| Q |
299 |
aattcttaaagtcttaatcatgatgcaccaatgttactattatattacataatatcaaattgagttttctacctttggtaattgtggctcatataaattc |
398 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52600626 |
aattcttaaagtcttaatcatgatgcaccaatgttactattatattacataatatcaaattgagttttctacctttggtaattgtggctcatataaattc |
52600725 |
T |
|
| Q |
399 |
acttacttattgaggactacttgtgttttgacagggaaagttggcagatggaaggctagttgcttgtaagaaattgtctcttgacaaatctcaccaagga |
498 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52600726 |
acttacttattgaggactacttgtgttttgacagggaaagttggcagatggaaggctagttgcttgtaagaaattgtctcttgacaaatctcaccaagga |
52600825 |
T |
|
| Q |
499 |
gaaagagaatttctagcagaagtgagaatgatcacaagtatccagcataaaaatcttgttcgccttctc |
567 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
52600826 |
gaaagagaatttctagcagaagtgagaatgatcacaagcatccagcataaaaatcttgttcgccttctc |
52600894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 4e-21; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 422 - 566
Target Start/End: Complemental strand, 16912478 - 16912334
Alignment:
| Q |
422 |
tgttttgacagggaaagttggcagatggaaggctagttgcttgtaagaaattgtctcttgacaaatctcaccaaggagaaagagaatttctagcagaagt |
521 |
Q |
| |
|
|||||||| |||||||||||| |||||||||| | ||||| |||| ||| |||||| |||||||||| |||||||||||||||||| | || || || |
|
|
| T |
16912478 |
tgttttgatagggaaagttggaagatggaaggatcattgctgttaaggcattatctcttaacaaatctcaacaaggagaaagagaatttttggctgaggt |
16912379 |
T |
|
| Q |
522 |
gagaatgatcacaagtatccagcataaaaatcttgttcgccttct |
566 |
Q |
| |
|
| | |||||||||||||||| || |||||| | ||||||||||| |
|
|
| T |
16912378 |
taaattgatcacaagtatccaacacaaaaatttggttcgccttct |
16912334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 103 - 232
Target Start/End: Complemental strand, 16912717 - 16912588
Alignment:
| Q |
103 |
atggagttcattagtgggaatcttaggacaattagctactttgatttccagacattgagaaaagccaccaagaatttccaccgcagatatcttcttggaa |
202 |
Q |
| |
|
||||||||| ||||||||| ||| || | |||||||||||||||| |||||| ||||| || || ||||| || ||| | || |||||||||||| |
|
|
| T |
16912717 |
atggagttctttagtgggagccttcggtctattagctactttgattaccagacgttgaggaaggcaaccaataacttctttcatggaaatcttcttggaa |
16912618 |
T |
|
| Q |
203 |
gtggtggatttggccctgtctatcaggtat |
232 |
Q |
| |
|
||||||||||||| ||||| ||| |||||| |
|
|
| T |
16912617 |
gtggtggatttggacctgtatataaggtat |
16912588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University