View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1946_low_91 (Length: 310)
Name: NF1946_low_91
Description: NF1946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1946_low_91 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 17 - 292
Target Start/End: Complemental strand, 43864775 - 43864500
Alignment:
| Q |
17 |
ttaggcatgtgggtcaagttagtaaatgnnnnnnngcatatggatagggtaaggtcaaggtcacactccatagaccacttaacatgtaagatactcagaa |
116 |
Q |
| |
|
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
43864775 |
ttaggcatgtaggtcaagttagtaaatgaaaaaaagcatatggatagggtaaggtcaaggtcacactccatagaccacttaacatgtaacatactcagaa |
43864676 |
T |
|
| Q |
117 |
aaggactagactagacatacaaactggttattatagatatggtgccgcgcacatagttgatagataattgagtttcttaacgatatcgtgaagagttcaa |
216 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
43864675 |
aaggactagactagacatacaaactcgttattatagatatggtgccgcgcacatagttgatagataattgagtttcttaacgatgtcgtgaagagttcaa |
43864576 |
T |
|
| Q |
217 |
tttcatgtttttgcatatgaaagagcaattgttgaaagagatccctcaaagaattttcccacctcctgatccatga |
292 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43864575 |
tttcatgtttttgcatatgaaagagcaattgttgaaagagatccctcaaagaattttcccacctcctgatccatga |
43864500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University