View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1946_low_94 (Length: 308)

Name: NF1946_low_94
Description: NF1946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1946_low_94
NF1946_low_94
[»] chr1 (2 HSPs)
chr1 (117-176)||(33905758-33905817)
chr1 (242-301)||(33905882-33905941)
[»] scaffold0199 (1 HSPs)
scaffold0199 (1-45)||(8575-8619)
[»] chr5 (1 HSPs)
chr5 (1-38)||(15641273-15641310)
[»] chr6 (1 HSPs)
chr6 (1-41)||(22576056-22576096)
[»] chr4 (1 HSPs)
chr4 (1-37)||(33696447-33696483)


Alignment Details
Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 117 - 176
Target Start/End: Original strand, 33905758 - 33905817
Alignment:
Q  117 aatatctatattatttaaattcatttaaattttagcttcaatatctatgttgtgggtttt 176  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  33905758 aatatctatattatttaaattcatttaaattttagctttaatatctatgttgtgggtttt 33905817  T

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Target: chr1; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 242 - 301
Target Start/End: Original strand, 33905882 - 33905941
Alignment:
Q  242 tattcaactgaaagtactttatggtatagattattacaacaatcaatgatggtgatgatg 301  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33905882 tattcaactaaaagtactttatggtatagattattacaacaatcaatgatggtgatgatg 33905941  T

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Target: scaffold0199 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 8575 - 8619
Alignment:
Q  1 tcccaagccaactactaggctaaccctaaatgggttatttgtgtt 45  Q
    |||||||||||| ||||||| ||||| ||||||||||||||||||    
T  8575 tcccaagccaaccactaggccaaccccaaatgggttatttgtgtt 8619  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 15641273 - 15641310
Alignment:
Q  1 tcccaagccaactactaggctaaccctaaatgggttat 38  Q
    |||||||||||| ||||||||||||| |||||||||||    
T  15641273 tcccaagccaaccactaggctaaccccaaatgggttat 15641310  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 22576096 - 22576056
Alignment:
Q  1 tcccaagccaactactaggctaaccctaaatgggttatttg 41  Q
    |||||||||||| ||||||| ||||| ||||||||||||||    
T  22576096 tcccaagccaaccactaggccaaccccaaatgggttatttg 22576056  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 33696447 - 33696483
Alignment:
Q  1 tcccaagccaactactaggctaaccctaaatgggtta 37  Q
    |||||||||||| ||||||| ||||||||||||||||    
T  33696447 tcccaagccaaccactaggccaaccctaaatgggtta 33696483  T

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