View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1946_low_99 (Length: 304)
Name: NF1946_low_99
Description: NF1946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1946_low_99 |
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Alignment Details
Target: chr1 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 11 - 289
Target Start/End: Original strand, 7805165 - 7805444
Alignment:
| Q |
11 |
cacagaaagagaatagtattagtaacaaagaatcttactaataaataatttgtataagcttcatgacagccaatcagattggtgagtaagtttccttaga |
110 |
Q |
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| T |
7805165 |
cacaaaaagagaatagtattagtaacaaagaatcttactaataaataatttgtataagcttcatgacagccaatcagattggtgagtaagcttccttaga |
7805264 |
T |
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| Q |
111 |
ttcccattgacaa-tcaatattcaaaaaactgaaaaattaattacttagggttcaattaatagtttttaacaacctaaggtacttttaagtgtaactaac |
209 |
Q |
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| T |
7805265 |
ttcccattgacaaatcaatattcaaaaaactgaaaaattaattacttagggttcaattaatagtttttaacaacctaaggtacttttaagtgtaactaac |
7805364 |
T |
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| Q |
210 |
taatcaataactgtattaagtatacatattttatatttatgtacgtctctcccactcctaaagggtaaagggtaacaaga |
289 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7805365 |
taattaataactgtattaagtatacatattttatatttatgtacgtctctcccactcctaaagggtaaagggtaacaaga |
7805444 |
T |
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