View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19470_high_13 (Length: 340)
Name: NF19470_high_13
Description: NF19470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19470_high_13 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 88 - 324
Target Start/End: Complemental strand, 13030088 - 13029852
Alignment:
| Q |
88 |
ttgatgagaacaagttgcaagtaaagtcttaaaactcaaactcaaaaaacccatatcaaatttttacctaaagataaagaaaagaggacacttttgaatt |
187 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
13030088 |
ttgatgagaacaagttgtaagtaaagtcttaaaactcaaactcaaaaaacccatatcaaatttttacctaaagataaagaaaagaggacccttttgaatt |
13029989 |
T |
|
| Q |
188 |
tttggtaacaaagttaagaaatttgtgtgtgggaagaataattggtggttattgtgagtgcagtggcagtgccactacccatttggcatttgatacnnnn |
287 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13029988 |
tttggtaacaaagttaagaaatttgtgtgtgggaagaataattgatggttattgtgagtgcagtggcagtgccactacccatttggcatttgatactttt |
13029889 |
T |
|
| Q |
288 |
nnnnnnnacttttgtggattaataataagttgaaaaa |
324 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
13029888 |
tttttttacttttgtggattaataataagttgaaaaa |
13029852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University