View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19470_high_14 (Length: 326)
Name: NF19470_high_14
Description: NF19470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19470_high_14 |
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Alignment Details
Target: chr2 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 19 - 312
Target Start/End: Original strand, 7242010 - 7242303
Alignment:
| Q |
19 |
cataaaagatgtcgagagcagattcgcggttcctcttatcggtatctcccttggcaatcactccataattatgcctgatgagctttgtcgaagacagaac |
118 |
Q |
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| T |
7242010 |
cataaaagatgtcgagagcagattcgcggttcctcttatcggtatctcccttggcaatcactccataattatgcctgatgagctttgtcgaagacagaac |
7242109 |
T |
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| Q |
119 |
cacgcaagctgttgcagaaagaagctgaagccaatacagaaccttgctgatatgccctgaaatgaaaaaccatttagcatatggtaaaagtggaacgtct |
218 |
Q |
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| T |
7242110 |
cacgcaagctgttgcagaaagaagctgaagccaatacagaaccttgctgatatgccctgaaatgaaaaaccatttagcatatggtaaaagtggaacgtct |
7242209 |
T |
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| Q |
219 |
gaactaatccacgtcctagtcgttgtccttgtgattctgttatccaaaaacctcggtacaatgacattagcctccacggtgtcttttctgtgct |
312 |
Q |
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| T |
7242210 |
gaactaatccacgtcctagtcgttgtccttgtgattctgttatccaaaaacctcggtacaatgacattagcctccacggtgtcttttctgtgct |
7242303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 114 - 249
Target Start/End: Complemental strand, 48730960 - 48730825
Alignment:
| Q |
114 |
agaaccacgcaagctgttgcagaaagaagctgaagccaatacagaaccttgctgatatgccctgaaatgaaaaaccatttagcatatggtaaaagtggaa |
213 |
Q |
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|||||||| | |||||||||||||| ||| ||||||||||| |||| | || | ||||| | ||| ||||||||||||||||| ||||| | ||||| |
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| T |
48730960 |
agaaccacactagctgttgcagaaataagttgaagccaatagagaattctacttacatgccttaaaagaaaaaaccatttagcataaggtaataatggaa |
48730861 |
T |
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| Q |
214 |
cgtctgaactaatccacgtcctagtcgttgtccttg |
249 |
Q |
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| T |
48730860 |
cttctgagctaacccacatcctagttggtgtccttg |
48730825 |
T |
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