View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19470_high_15 (Length: 301)
Name: NF19470_high_15
Description: NF19470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19470_high_15 |
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Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 18 - 271
Target Start/End: Original strand, 34642253 - 34642506
Alignment:
| Q |
18 |
gttagccaagaatactcaattttgatacatttttcagatgatattcatgtttggttggttgtaaatatttattgtttgctaaatgtgagtctcgtaacat |
117 |
Q |
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| T |
34642253 |
gttagccaagaatactcaatttagatacatttttcagatgatattcatgtttgggcggttgtaaatatttattgtttgctaaatgtgagtctcgtaacat |
34642352 |
T |
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| Q |
118 |
ttaagggaaatatgattacacagctagctattctacttagataagtttgtcaagaattagtttatgaatgatataagtattagaaccaatgttttaaaaa |
217 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
34642353 |
ttaagggaaatatgattacacagctagctattatacttagataagtttgtcaagaattagtttatgaatgatataagtattagaagcaatgttttaaaaa |
34642452 |
T |
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| Q |
218 |
atagagcggatattatacggcgaaccaaacaaatctgttaaatcgtaatccaaa |
271 |
Q |
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|||||||||||| |||||||||||||||||||| |||||||| |||||| |||| |
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| T |
34642453 |
atagagcggatactatacggcgaaccaaacaaacctgttaaaccgtaattcaaa |
34642506 |
T |
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