View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19470_high_20 (Length: 206)

Name: NF19470_high_20
Description: NF19470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19470_high_20
NF19470_high_20
[»] chr8 (2 HSPs)
chr8 (1-70)||(10911526-10911595)
chr8 (134-192)||(10911659-10911717)
[»] chr4 (3 HSPs)
chr4 (134-192)||(13733060-13733118)
chr4 (134-185)||(13724475-13724526)
chr4 (1-70)||(13724590-13724661)


Alignment Details
Target: chr8 (Bit Score: 62; Significance: 6e-27; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 10911526 - 10911595
Alignment:
Q  1 acccttcaacgttcaacatctcttctccgtaacatgagcaatctcccagaaaacacagtatacacaggtc 70  Q
    |||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10911526 acccttcatcgttcatcatctcttctccgtaacatgagcaatctcccagaaaacacagtatacacaggtc 10911595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 134 - 192
Target Start/End: Original strand, 10911659 - 10911717
Alignment:
Q  134 caatcacaatggtcactgcttatgattacccttctgctgttcacctcgatatcgccgcc 192  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  10911659 caatcacaatggtcactgcttatgattacccttctgctgttcacctcgatatggccgcc 10911717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 2e-20; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 134 - 192
Target Start/End: Complemental strand, 13733118 - 13733060
Alignment:
Q  134 caatcacaatggtcactgcttatgattacccttctgctgttcacctcgatatcgccgcc 192  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||    
T  13733118 caatcacaatggtcactgtttatgattacccttctgctgttcacctcgatatggccgcc 13733060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 134 - 185
Target Start/End: Complemental strand, 13724526 - 13724475
Alignment:
Q  134 caatcacaatggtcactgcttatgattacccttctgctgttcacctcgatat 185  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  13724526 caatcacaatggtcactgcttatgattacccttctgctgttcaccacgatat 13724475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 13724661 - 13724590
Alignment:
Q  1 acccttcaacgttcaacatctcttctccgtaacatgagcaatctc--ccagaaaacacagtatacacaggtc 70  Q
    |||||||| |||||| ||||| ||||| |||||||||||||||||  |||||||||||||||||||||||||    
T  13724661 acccttcatcgttcatcatcttttctctgtaacatgagcaatctctcccagaaaacacagtatacacaggtc 13724590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University