View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19470_high_8 (Length: 431)
Name: NF19470_high_8
Description: NF19470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19470_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 385; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 1 - 412
Target Start/End: Original strand, 41943940 - 41944351
Alignment:
| Q |
1 |
taatataataattgatgtcaaagactcttgttctacatttttagctgaagataaccaaaactcctgcgatccagtgagcatgatttgagagaatgttgtg |
100 |
Q |
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| T |
41943940 |
taatataataattgatgtcaaagactcttgttctacatttttagctgaagataaccaaaactcctgcgatccagtgagcatgatttgagagaatgttgtg |
41944039 |
T |
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| Q |
101 |
tcaactaactaccgaaaaataccacaaaataagaactatacccatcaagcaacaacagtnnnnnnnnntgcaatactcaagaggtcaatgagggcataga |
200 |
Q |
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| T |
41944040 |
tcaactaactaccgaaaaataccacaaaataagaactatacccatcaagcaacaacagtaaaaaaaaatgcaatactcaagaggtcaatgagggcataga |
41944139 |
T |
|
| Q |
201 |
tttgacgggcgtcttcatgcccaataaaattatgtgctttgtcactttgtctatcaaaactacttgtaaattttgtcttagactattattttgctctcaa |
300 |
Q |
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| T |
41944140 |
tttgacgggcgtcttcatgcccaataaaattatgtgctttgtcactttgtctatcaaaactacttgtaaattttgtcttagactattattttgctctcaa |
41944239 |
T |
|
| Q |
301 |
tatacctttgtctatctgctcttcactttacttatgtttttcttaggttagtagttctcaaaaaccccaaaactccgtatttaacattatttgaaagagc |
400 |
Q |
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| T |
41944240 |
tatacctttgtctatctgctcttcactttacttatgtttttcttaggttagtagttctcaaaaaccccaaaactccgtatttaacattatttgaaagagc |
41944339 |
T |
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| Q |
401 |
cgaggaatccac |
412 |
Q |
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| T |
41944340 |
cgaggaatccac |
41944351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 286 - 412
Target Start/End: Original strand, 41952405 - 41952531
Alignment:
| Q |
286 |
ttattttgctctcaatatacctttgtctatctgctcttcactttacttatgtttttcttaggttagtagttctcaaaaaccccaaaactccgtatttaac |
385 |
Q |
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| T |
41952405 |
ttattttgctagcaatataccttagtttaactgttgttcactttacttgtgtttttcgaagagtagtggttctcataaaacccaaaaatccatatttaac |
41952504 |
T |
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| Q |
386 |
attatttgaaagagccgaggaatccac |
412 |
Q |
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| T |
41952505 |
attatttgaaagagccgaggaatccac |
41952531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 32 - 142
Target Start/End: Original strand, 41952163 - 41952273
Alignment:
| Q |
32 |
tctacatttttagctgaagataaccaaaactcctgcgatccagtgagcatgatttgagagaatgttgtgtcaactaactaccgaaaaataccacaaaata |
131 |
Q |
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| T |
41952163 |
tctacgttttcagctcaagataacgaaaacacatatgatccaatgagcgtagtttgggagaatgttgtgttggctaactaccaaaaaacaccacaaaata |
41952262 |
T |
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| Q |
132 |
agaactatacc |
142 |
Q |
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| T |
41952263 |
agaacaatacc |
41952273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 286 - 412
Target Start/End: Original strand, 1212600 - 1212726
Alignment:
| Q |
286 |
ttattttgctctcaatatacctttgtctatctgctcttcactttacttatgtttttcttaggttagtagttctcaaaaaccccaaaactccgtatttaac |
385 |
Q |
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||||||||||| ||||||||||| || ||||| | |||||||||||| |||||||| || |||| ||||||| ||||||||||| ||| |||||||| |
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| T |
1212600 |
ttattttgctcgcaatataccttagtttatcttttgttcactttacttgtgtttttcgaagagtagtggttctcataaaccccaaaaatccatatttaac |
1212699 |
T |
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| Q |
386 |
attatttgaaagagccgaggaatccac |
412 |
Q |
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| T |
1212700 |
attatttgaaagagccgaggaatccac |
1212726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 84 - 142
Target Start/End: Original strand, 1212414 - 1212472
Alignment:
| Q |
84 |
tttgagagaatgttgtgtcaactaactaccgaaaaataccacaaaataagaactatacc |
142 |
Q |
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|||| ||||||||||||| ||||||||| ||||| |||||||||||||||| ||||| |
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| T |
1212414 |
tttgggagaatgttgtgttggctaactaccaaaaaacaccacaaaataagaacaatacc |
1212472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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